Wall clock time and date at job start Mon Mar 30 2020 06:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47234 * 2 1 4 4 C 1.53000 * 109.46945 * 119.99710 * 2 1 3 5 5 C 1.52995 * 109.47235 * 175.00078 * 4 2 1 6 6 C 1.53000 * 109.47235 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47086 * 179.97438 * 6 5 4 8 8 O 1.20829 * 120.00077 * 359.97438 * 7 6 5 9 9 O 1.34224 * 119.99958 * 180.02562 * 7 6 5 10 10 C 1.45207 * 117.00145 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47305 * 179.97438 * 10 9 7 12 12 C 1.50701 * 115.54913 * 294.89081 * 11 10 9 13 13 H 1.07995 * 120.00397 * 95.16717 * 12 11 10 14 14 C 1.37878 * 119.99626 * 274.88524 * 12 11 10 15 15 N 1.31520 * 120.00038 * 6.39360 * 14 12 11 16 16 Si 1.86796 * 120.00205 * 186.39563 * 14 12 11 17 17 H 1.48504 * 109.47020 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47190 * 119.99838 * 16 14 12 19 19 H 1.48496 * 109.47249 * 239.99932 * 16 14 12 20 20 C 1.53006 * 117.49693 * 80.55213 * 11 10 9 21 21 C 1.52997 * 117.49830 * 149.21413 * 11 10 9 22 22 H 1.08993 * 109.47394 * 300.00355 * 1 2 3 23 23 H 1.09005 * 109.46708 * 60.00018 * 1 2 3 24 24 H 1.08995 * 109.47054 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46954 * 239.99826 * 2 1 3 26 26 H 1.08994 * 109.47315 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47119 * 300.00151 * 3 2 1 28 28 H 1.09001 * 109.46885 * 59.99392 * 3 2 1 29 29 H 1.09002 * 109.46780 * 55.00192 * 4 2 1 30 30 H 1.09002 * 109.47157 * 295.00441 * 4 2 1 31 31 H 1.08999 * 109.46861 * 59.99895 * 5 4 2 32 32 H 1.09002 * 109.47344 * 300.00247 * 5 4 2 33 33 H 1.09002 * 109.46780 * 60.00113 * 6 5 4 34 34 H 1.08995 * 109.47098 * 299.99951 * 6 5 4 35 35 H 1.09000 * 109.47008 * 60.00041 * 10 9 7 36 36 H 1.08998 * 109.46903 * 299.99954 * 10 9 7 37 37 H 0.96995 * 120.00267 * 180.02562 * 15 14 12 38 38 H 1.08998 * 117.49874 * 215.00127 * 20 11 10 39 39 H 1.08995 * 117.49819 * 0.02968 * 20 11 10 40 40 H 1.08998 * 117.50062 * 359.97438 * 21 11 10 41 41 H 1.09000 * 117.49878 * 144.97626 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 6 4.0748 -1.5516 2.4377 7 6 5.5766 -1.6603 2.3771 8 8 6.1774 -1.2083 1.4312 9 8 6.2468 -2.2603 3.3733 10 6 7.6919 -2.3283 3.2484 11 6 8.2764 -3.0408 4.4697 12 6 8.0993 -2.3271 5.7851 13 1 7.2663 -2.5749 6.4262 14 6 9.0041 -1.3616 6.1728 15 7 9.9480 -0.9739 5.3431 16 14 8.8894 -0.6043 7.8765 17 1 7.7480 -1.2075 8.6105 18 1 10.1488 -0.8637 8.6194 19 1 8.6797 0.8607 7.7539 20 6 8.2312 -4.5701 4.4842 21 6 9.5624 -3.8453 4.2699 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6054 -1.7198 1.2952 30 1 1.7516 -0.1582 2.1370 31 1 3.9994 0.1675 1.1421 32 1 3.8532 -1.3940 0.3004 33 1 3.6402 -2.5502 2.4840 34 1 3.7864 -0.9883 3.3251 35 1 8.0992 -1.3191 3.1876 36 1 7.9529 -2.8806 2.3457 37 1 10.5848 -0.2950 5.6159 38 1 8.0736 -5.0599 5.4451 39 1 7.7855 -5.0686 3.6234 40 1 9.9918 -3.8673 3.2684 41 1 10.2806 -3.8579 5.0898 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835187001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:27 Heat of formation + Delta-G solvation = -99.529572 kcal Electronic energy + Delta-G solvation = -18712.356515 eV Core-core repulsion = 15784.988961 eV Total energy + Delta-G solvation = -2927.367554 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.75809 -37.33596 -36.65544 -35.18692 -32.85594 -31.96035 -28.03764 -27.31710 -26.38530 -25.18055 -22.51265 -21.16918 -20.13470 -19.85458 -19.24172 -16.90837 -16.44085 -16.15667 -15.35583 -15.22036 -14.64799 -14.34242 -14.18151 -13.67834 -13.57659 -12.99319 -12.45664 -12.40947 -12.14576 -11.95649 -11.73831 -11.67038 -11.50090 -11.05772 -11.00587 -10.84199 -10.78023 -10.71191 -10.52103 -10.49118 -10.28841 -9.95169 -9.81078 -9.51659 -8.81431 -8.47476 -8.20464 -6.07110 -4.12265 2.83215 3.27281 3.35804 3.39845 3.41355 4.39048 4.62667 4.73207 4.77046 5.05683 5.12557 5.21965 5.23843 5.39286 5.44397 5.51444 5.53285 5.63434 5.70745 5.74941 5.79019 5.83834 6.00110 6.02414 6.05482 6.12017 6.25851 6.30578 6.34440 6.37467 6.54705 6.67674 6.74045 7.02970 7.30489 7.37113 7.49059 7.86428 8.37132 8.50469 8.89715 9.53565 11.02391 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.025701 B = 0.004105 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.191588 B = 6818.768920 C = 7348.554148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.152 4.152 4 C -0.115 4.115 5 C -0.110 4.110 6 C -0.115 4.115 7 C 0.451 3.549 8 O -0.526 6.526 9 O -0.340 6.340 10 C 0.116 3.884 11 C 0.037 3.963 12 C -0.489 4.489 13 H 0.064 0.936 14 C 0.068 3.932 15 N -0.881 5.881 16 Si 0.892 3.108 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.284 1.284 20 C -0.205 4.205 21 C -0.146 4.146 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.261 0.739 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.651 0.430 -7.890 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.209 4.209 4 C -0.152 4.152 5 C -0.147 4.147 6 C -0.152 4.152 7 C 0.294 3.706 8 O -0.417 6.417 9 O -0.255 6.255 10 C 0.043 3.957 11 C 0.037 3.963 12 C -0.527 4.527 13 H 0.082 0.918 14 C -0.135 4.135 15 N -0.518 5.518 16 Si 0.720 3.280 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.243 4.243 21 C -0.184 4.184 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.265 0.676 -8.153 16.444 hybrid contribution 0.277 0.523 0.792 0.989 sum -13.988 1.199 -7.361 15.853 Atomic orbital electron populations 1.21846 0.95435 1.01564 1.01599 1.21113 0.95407 0.96567 0.98525 1.21915 1.01700 0.95823 1.01447 1.21664 0.95048 1.00583 0.97949 1.21479 0.94868 1.01586 0.96790 1.21368 0.88764 1.03807 1.01303 1.23650 0.91580 0.74845 0.80485 1.90603 1.70870 1.45782 1.34432 1.86519 1.24463 1.69732 1.44762 1.22864 0.73748 1.01938 0.97190 1.18787 0.96211 0.87613 0.93696 1.20433 1.10744 1.20115 1.01377 0.91812 1.25025 0.95200 0.96120 0.97179 1.70011 1.17004 1.30035 1.34763 0.86527 0.78051 0.78961 0.84466 1.19570 1.20915 1.21024 1.23004 1.02813 0.97932 1.00508 1.22545 0.91029 1.04702 1.00101 0.92730 0.92920 0.92788 0.91220 0.92046 0.93044 0.92734 0.91807 0.91696 0.90810 0.91239 0.88263 0.87996 0.90661 0.94452 0.92967 0.90067 0.91566 0.91659 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.19 37.16 0.34 -0.76 16 2 C -0.10 -0.85 2.92 -90.62 -0.26 -1.12 16 3 C -0.15 -1.36 8.95 37.16 0.33 -1.03 16 4 C -0.11 -1.07 4.68 -26.73 -0.13 -1.20 16 5 C -0.11 -1.31 4.26 -26.73 -0.11 -1.43 16 6 C -0.11 -1.54 5.81 -27.88 -0.16 -1.70 16 7 C 0.45 8.67 7.96 36.00 0.29 8.96 16 8 O -0.53 -11.40 15.73 -18.75 -0.29 -11.69 16 9 O -0.34 -7.56 10.16 -39.24 -0.40 -7.95 16 10 C 0.12 2.81 5.29 37.16 0.20 3.00 16 11 C 0.04 0.94 1.61 -155.66 -0.25 0.69 16 12 C -0.49 -13.43 8.77 -34.44 -0.30 -13.73 16 13 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 14 C 0.07 1.86 5.39 -17.82 -0.10 1.77 16 15 N -0.88 -25.03 12.93 55.43 0.72 -24.32 16 16 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.21 -4.51 9.96 -26.69 -0.27 -4.78 16 21 C -0.15 -3.43 9.43 -26.69 -0.25 -3.68 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.96 6.52 -51.93 -0.34 0.62 16 32 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.08 2.02 8.13 -51.93 -0.42 1.60 16 36 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 341.41 15.07 5.15 5.15 Total: -1.00 -29.94 341.41 -7.93 -37.87 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.41 Total: -0.12 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -0.67 Total: -15.02 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.72 Total: -24.32 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.69 Total: -19.65 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.94 -7.93 -37.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835187001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.659 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds