Wall clock time and date at job start Mon Mar 30 2020 06:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47234 * 2 1 4 4 C 1.53000 * 109.46945 * 119.99710 * 2 1 3 5 5 C 1.52995 * 109.47235 * 175.00078 * 4 2 1 6 6 C 1.53000 * 109.47235 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47086 * 179.97438 * 6 5 4 8 8 O 1.20829 * 120.00077 * 359.97438 * 7 6 5 9 9 O 1.34224 * 119.99958 * 180.02562 * 7 6 5 10 10 C 1.45207 * 117.00145 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47305 * 179.97438 * 10 9 7 12 12 C 1.50701 * 115.54913 * 294.89081 * 11 10 9 13 13 H 1.07995 * 120.00397 * 95.16717 * 12 11 10 14 14 C 1.37878 * 119.99626 * 274.88524 * 12 11 10 15 15 N 1.31520 * 120.00038 * 6.39360 * 14 12 11 16 16 Si 1.86796 * 120.00205 * 186.39563 * 14 12 11 17 17 H 1.48504 * 109.47020 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47190 * 119.99838 * 16 14 12 19 19 H 1.48496 * 109.47249 * 239.99932 * 16 14 12 20 20 C 1.53006 * 117.49693 * 80.55213 * 11 10 9 21 21 C 1.52997 * 117.49830 * 149.21413 * 11 10 9 22 22 H 1.08993 * 109.47394 * 300.00355 * 1 2 3 23 23 H 1.09005 * 109.46708 * 60.00018 * 1 2 3 24 24 H 1.08995 * 109.47054 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46954 * 239.99826 * 2 1 3 26 26 H 1.08994 * 109.47315 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47119 * 300.00151 * 3 2 1 28 28 H 1.09001 * 109.46885 * 59.99392 * 3 2 1 29 29 H 1.09002 * 109.46780 * 55.00192 * 4 2 1 30 30 H 1.09002 * 109.47157 * 295.00441 * 4 2 1 31 31 H 1.08999 * 109.46861 * 59.99895 * 5 4 2 32 32 H 1.09002 * 109.47344 * 300.00247 * 5 4 2 33 33 H 1.09002 * 109.46780 * 60.00113 * 6 5 4 34 34 H 1.08995 * 109.47098 * 299.99951 * 6 5 4 35 35 H 1.09000 * 109.47008 * 60.00041 * 10 9 7 36 36 H 1.08998 * 109.46903 * 299.99954 * 10 9 7 37 37 H 0.96995 * 120.00267 * 180.02562 * 15 14 12 38 38 H 1.08998 * 117.49874 * 215.00127 * 20 11 10 39 39 H 1.08995 * 117.49819 * 0.02968 * 20 11 10 40 40 H 1.08998 * 117.50062 * 359.97438 * 21 11 10 41 41 H 1.09000 * 117.49878 * 144.97626 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 6 4.0748 -1.5516 2.4377 7 6 5.5766 -1.6603 2.3771 8 8 6.1774 -1.2083 1.4312 9 8 6.2468 -2.2603 3.3733 10 6 7.6919 -2.3283 3.2484 11 6 8.2764 -3.0408 4.4697 12 6 8.0993 -2.3271 5.7851 13 1 7.2663 -2.5749 6.4262 14 6 9.0041 -1.3616 6.1728 15 7 9.9480 -0.9739 5.3431 16 14 8.8894 -0.6043 7.8765 17 1 7.7480 -1.2075 8.6105 18 1 10.1488 -0.8637 8.6194 19 1 8.6797 0.8607 7.7539 20 6 8.2312 -4.5701 4.4842 21 6 9.5624 -3.8453 4.2699 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6054 -1.7198 1.2952 30 1 1.7516 -0.1582 2.1370 31 1 3.9994 0.1675 1.1421 32 1 3.8532 -1.3940 0.3004 33 1 3.6402 -2.5502 2.4840 34 1 3.7864 -0.9883 3.3251 35 1 8.0992 -1.3191 3.1876 36 1 7.9529 -2.8806 2.3457 37 1 10.5848 -0.2950 5.6159 38 1 8.0736 -5.0599 5.4451 39 1 7.7855 -5.0686 3.6234 40 1 9.9918 -3.8673 3.2684 41 1 10.2806 -3.8579 5.0898 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835187001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:27 Heat of formation + Delta-G solvation = -113.674958 kcal Electronic energy + Delta-G solvation = -18712.969905 eV Core-core repulsion = 15784.988961 eV Total energy + Delta-G solvation = -2927.980944 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.37402 -38.73302 -37.90218 -36.89928 -34.04076 -33.85671 -29.37355 -28.03552 -27.91973 -27.10971 -23.61882 -22.96120 -21.31285 -21.18884 -20.81527 -18.54777 -18.26301 -17.58463 -17.00628 -16.58734 -16.25337 -15.70393 -15.26225 -14.89856 -14.84659 -14.28175 -13.90996 -13.76715 -13.55508 -13.09537 -13.01952 -12.93574 -12.82377 -12.62256 -12.47870 -12.36548 -12.10363 -11.90668 -11.71048 -11.65353 -11.56802 -11.43766 -11.30945 -11.22584 -10.78327 -10.50752 -10.09347 -8.15080 -6.26541 1.29199 1.40174 1.42671 1.54247 1.88960 2.41775 3.13963 3.41310 3.77329 3.80881 3.97721 4.12001 4.13726 4.22656 4.34329 4.39203 4.46365 4.59282 4.64989 4.67000 4.74688 4.83699 4.86913 4.91703 4.95323 5.00329 5.05878 5.11966 5.16831 5.23423 5.29712 5.41915 5.45580 5.54489 5.56920 5.57864 5.73413 5.76462 6.34638 6.79264 6.87461 7.42444 8.94112 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.025701 B = 0.004105 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.191588 B = 6818.768920 C = 7348.554148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.153 4.153 4 C -0.108 4.108 5 C -0.105 4.105 6 C -0.105 4.105 7 C 0.444 3.556 8 O -0.556 6.556 9 O -0.350 6.350 10 C 0.128 3.872 11 C 0.003 3.997 12 C -0.504 4.504 13 H 0.057 0.943 14 C 0.021 3.979 15 N -0.911 5.911 16 Si 0.954 3.046 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.284 1.284 20 C -0.176 4.176 21 C -0.149 4.149 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.129 0.871 34 H 0.119 0.881 35 H 0.037 0.963 36 H 0.046 0.954 37 H 0.261 0.739 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.651 -0.194 -7.476 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.210 4.210 4 C -0.145 4.145 5 C -0.142 4.142 6 C -0.142 4.142 7 C 0.290 3.710 8 O -0.448 6.448 9 O -0.266 6.266 10 C 0.054 3.946 11 C 0.003 3.997 12 C -0.542 4.542 13 H 0.075 0.925 14 C -0.179 4.179 15 N -0.549 5.549 16 Si 0.780 3.220 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.210 1.210 20 C -0.213 4.213 21 C -0.186 4.186 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.147 0.853 34 H 0.137 0.863 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.285 0.042 -7.740 18.030 hybrid contribution 0.874 0.725 0.601 1.285 sum -15.411 0.767 -7.139 17.001 Atomic orbital electron populations 1.21813 0.94148 1.02153 1.02015 1.21123 0.96439 0.96055 0.98117 1.21923 1.00669 0.96421 1.01978 1.21628 0.92671 1.01703 0.98539 1.21456 0.96829 1.00248 0.95711 1.21572 0.84041 1.05960 1.02649 1.24874 0.93617 0.73361 0.79190 1.90588 1.71938 1.46863 1.35412 1.86530 1.23268 1.70570 1.46223 1.22461 0.75178 0.99672 0.97242 1.18891 0.97987 0.89598 0.93239 1.20684 1.10566 1.20574 1.02362 0.92526 1.25759 0.94948 0.96605 1.00604 1.70120 1.17724 1.30630 1.36388 0.85558 0.78288 0.77920 0.80248 1.18772 1.20388 1.20968 1.23017 1.00842 0.95682 1.01804 1.22485 0.90996 1.05037 1.00100 0.92404 0.92472 0.92113 0.91614 0.93644 0.92355 0.92417 0.90299 0.90948 0.92474 0.92135 0.85343 0.86303 0.94468 0.93625 0.93019 0.89449 0.89082 0.90537 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.19 71.98 0.66 -1.16 16 2 C -0.10 -1.55 2.92 -10.79 -0.03 -1.58 16 3 C -0.15 -2.59 8.95 71.98 0.64 -1.95 16 4 C -0.11 -1.75 4.68 30.59 0.14 -1.61 16 5 C -0.10 -2.37 4.26 30.59 0.13 -2.24 16 6 C -0.11 -2.62 5.81 29.85 0.17 -2.44 16 7 C 0.44 16.91 7.96 71.24 0.57 17.48 16 8 O -0.56 -24.45 15.73 21.95 0.35 -24.10 16 9 O -0.35 -15.52 10.16 -51.36 -0.52 -16.04 16 10 C 0.13 6.30 5.29 71.98 0.38 6.68 16 11 C 0.00 0.17 1.61 -52.93 -0.08 0.08 16 12 C -0.50 -27.80 8.77 25.60 0.22 -27.58 16 13 H 0.06 3.11 7.82 -2.91 -0.02 3.09 16 14 C 0.02 1.16 5.39 84.65 0.46 1.61 16 15 N -0.91 -52.62 12.93 21.45 0.28 -52.34 16 16 Si 0.95 43.41 29.54 68.60 2.03 45.43 16 17 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 C -0.18 -7.47 9.96 30.62 0.30 -7.16 16 21 C -0.15 -6.93 9.43 30.62 0.29 -6.64 16 22 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.04 0.90 6.56 -2.39 -0.02 0.89 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.48 6.52 -2.39 -0.02 1.47 16 32 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 33 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.04 2.07 8.13 -2.39 -0.02 2.05 16 36 H 0.05 2.11 8.08 -2.39 -0.02 2.09 16 37 H 0.26 14.36 8.31 -92.71 -0.77 13.58 16 38 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 39 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 40 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.07 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -64.69 341.41 6.95 -57.74 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.97 Total: 15.83 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 3.86 Total: -26.52 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.28 Total: -52.34 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -0.18 Total: -40.14 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -64.69 6.95 -57.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835187001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.935 kcal (2) G-P(sol) polarization free energy of solvation -64.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds