Wall clock time and date at job start Mon Mar 30 2020 06:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 110.05240 * 2 1 4 4 C 1.54266 * 110.03236 * 238.58831 * 2 1 3 5 5 C 1.54889 * 104.19262 * 217.10351 * 4 2 1 6 6 C 1.54889 * 102.75184 * 37.93843 * 5 4 2 7 7 C 1.53868 * 110.03347 * 121.41487 * 2 1 3 8 8 H 1.08997 * 110.07691 * 238.59074 * 7 2 1 9 9 O 1.45202 * 110.03302 * 0.02562 * 7 2 1 10 10 C 1.34230 * 116.99836 * 208.62280 * 9 7 2 11 11 O 1.20833 * 119.99930 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00262 * 180.27336 * 10 9 7 13 13 C 1.52996 * 109.47491 * 179.72204 * 12 10 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 10 15 15 C 1.50693 * 109.47293 * 179.97438 * 14 13 12 16 16 H 1.08007 * 120.00180 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00333 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00026 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00350 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47530 * 60.00029 * 19 17 15 21 21 H 1.48499 * 109.47370 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47156 * 299.99594 * 19 17 15 23 23 H 1.09000 * 109.47297 * 298.57998 * 1 2 3 24 24 H 1.09001 * 109.47109 * 58.58579 * 1 2 3 25 25 H 1.09007 * 109.46704 * 178.58244 * 1 2 3 26 26 H 1.08998 * 109.46867 * 181.41648 * 3 2 1 27 27 H 1.09000 * 109.47253 * 301.41946 * 3 2 1 28 28 H 1.08999 * 109.47342 * 61.41391 * 3 2 1 29 29 H 1.08990 * 110.49080 * 98.42734 * 4 2 1 30 30 H 1.09004 * 110.48710 * 335.77836 * 4 2 1 31 31 H 1.08994 * 110.75866 * 279.62554 * 5 4 2 32 32 H 1.09004 * 110.91523 * 156.32923 * 5 4 2 33 33 H 1.08995 * 110.48855 * 203.37758 * 6 5 4 34 34 H 1.08999 * 110.48431 * 80.73651 * 6 5 4 35 35 H 1.09004 * 109.46801 * 299.72165 * 12 10 9 36 36 H 1.09000 * 109.47461 * 59.71633 * 12 10 9 37 37 H 1.09004 * 109.47066 * 299.99799 * 13 12 10 38 38 H 1.08994 * 109.47405 * 59.99969 * 13 12 10 39 39 H 1.08996 * 109.47187 * 300.00268 * 14 13 12 40 40 H 1.09008 * 109.46785 * 59.99617 * 14 13 12 41 41 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0585 -0.7554 -1.2369 5 6 3.3137 -1.5006 -0.7192 6 6 2.8876 -1.9405 0.7035 7 6 2.0571 -0.7535 1.2337 8 1 2.6865 -0.0958 1.8331 9 8 0.9459 -1.2412 2.0310 10 6 1.1551 -1.3756 3.3501 11 8 2.2313 -1.0954 3.8227 12 6 0.0499 -1.8822 4.2405 13 6 0.5484 -1.9470 5.6855 14 6 -0.5739 -2.4608 6.5897 15 6 -0.0827 -2.5252 8.0129 16 1 0.9287 -2.2289 8.2491 17 6 -0.9247 -2.9614 9.0137 18 7 -2.1564 -3.3218 8.7263 19 14 -0.3161 -3.0406 10.7780 20 1 0.0953 -1.6843 11.2211 21 1 -1.4053 -3.5394 11.6555 22 1 0.8458 -3.9618 10.8599 23 1 -0.3634 0.4916 0.9024 24 1 -0.3633 0.5356 -0.8770 25 1 -0.3633 -1.0274 -0.0254 26 1 3.1443 1.4263 -0.0254 27 1 1.6760 1.9623 -0.8770 28 1 1.7173 1.9472 0.9024 29 1 2.3297 -0.0536 -2.0254 30 1 1.3143 -1.4660 -1.5967 31 1 4.1710 -0.8290 -0.6752 32 1 3.5357 -2.3676 -1.3414 33 1 3.7638 -2.1036 1.3309 34 1 2.2773 -2.8425 0.6571 35 1 -0.8035 -1.2067 4.1805 36 1 -0.2513 -2.8779 3.9151 37 1 1.4018 -2.6225 5.7455 38 1 0.8496 -0.9514 6.0110 39 1 -1.4270 -1.7851 6.5296 40 1 -0.8755 -3.4565 6.2643 41 1 -2.7490 -3.6283 9.4304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847702599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:23 Heat of formation + Delta-G solvation = -129.640027 kcal Electronic energy + Delta-G solvation = -19007.775299 eV Core-core repulsion = 16079.102057 eV Total energy + Delta-G solvation = -2928.673242 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.61745 -38.70168 -35.80046 -34.27608 -32.45355 -32.09262 -28.83120 -27.72433 -27.45196 -24.85582 -23.88341 -21.51424 -20.73319 -19.75465 -19.02945 -17.43237 -16.41955 -16.05752 -15.86083 -15.41629 -14.80069 -14.41009 -14.01308 -13.74463 -13.45680 -13.25166 -12.91423 -12.39255 -12.34112 -12.14863 -11.88402 -11.78046 -11.44201 -11.33575 -11.21107 -10.81890 -10.80257 -10.75911 -10.69160 -10.60774 -10.57642 -10.28418 -10.07658 -9.71647 -9.37649 -9.09121 -8.33125 -5.98715 -4.00682 2.56135 2.92220 3.36041 3.39665 3.43244 4.18162 4.29725 4.48123 4.56910 4.88177 5.01239 5.05640 5.11712 5.20745 5.27353 5.37235 5.39280 5.48327 5.59853 5.64430 5.65196 5.66801 5.68571 5.78343 5.80128 5.88205 5.94697 6.06397 6.10877 6.17549 6.27822 6.64137 6.73624 6.84387 7.09619 7.67738 7.79887 8.01020 8.11381 8.43993 9.05852 9.63315 11.12724 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.047226 B = 0.003464 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.750789 B = 8080.618158 C = 8239.289647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.067 4.067 3 C -0.140 4.140 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.141 4.141 7 C 0.089 3.911 8 H 0.087 0.913 9 O -0.350 6.350 10 C 0.457 3.543 11 O -0.510 6.510 12 C -0.112 4.112 13 C -0.099 4.099 14 C 0.021 3.979 15 C -0.520 4.520 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.818 5.845 -21.499 23.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.068 4.068 3 C -0.198 4.198 4 C -0.151 4.151 5 C -0.160 4.160 6 C -0.179 4.179 7 C 0.034 3.966 8 H 0.105 0.895 9 O -0.268 6.268 10 C 0.301 3.699 11 O -0.397 6.397 12 C -0.150 4.150 13 C -0.137 4.137 14 C -0.016 4.016 15 C -0.559 4.559 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.993 5.878 -21.295 23.172 hybrid contribution 0.404 -0.054 1.066 1.142 sum 7.398 5.824 -20.229 22.313 Atomic orbital electron populations 1.21669 0.93066 1.02525 1.01421 1.21283 0.97177 0.95023 0.93267 1.21927 1.00963 0.94647 1.02223 1.22485 0.97331 0.98907 0.96398 1.22417 0.97773 1.00158 0.95618 1.22791 0.99956 0.98369 0.96758 1.23437 0.86614 0.95702 0.90886 0.89539 1.86651 1.42308 1.77343 1.20489 1.24415 0.90024 0.74189 0.81288 1.90622 1.27228 1.46513 1.75355 1.21676 0.95303 1.02933 0.95057 1.21566 1.00575 1.01800 0.89760 1.19121 0.92722 0.96340 0.93397 1.21206 0.98503 1.43658 0.92497 0.92609 1.25015 0.94908 0.95402 0.99125 1.69950 1.05922 1.44677 1.33073 0.86638 0.78307 0.78467 0.84483 1.20215 1.21302 1.20220 0.92237 0.92999 0.91818 0.92437 0.92023 0.92355 0.91212 0.90988 0.91311 0.91061 0.90852 0.90347 0.88243 0.88218 0.92500 0.92507 0.96377 0.96384 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 7.41 37.16 0.28 -1.00 16 2 C -0.07 -0.65 0.94 -153.39 -0.14 -0.80 16 3 C -0.14 -1.21 8.15 37.16 0.30 -0.91 16 4 C -0.11 -0.91 5.90 -25.07 -0.15 -1.06 16 5 C -0.12 -1.01 6.91 -24.74 -0.17 -1.18 16 6 C -0.14 -1.55 6.56 -25.07 -0.16 -1.71 16 7 C 0.09 1.10 2.85 -25.62 -0.07 1.02 16 8 H 0.09 1.19 6.72 -51.93 -0.35 0.84 16 9 O -0.35 -5.05 8.00 -39.26 -0.31 -5.37 16 10 C 0.46 7.72 7.95 36.00 0.29 8.00 16 11 O -0.51 -9.98 15.22 -18.76 -0.29 -10.26 16 12 C -0.11 -1.91 5.81 -27.89 -0.16 -2.07 16 13 C -0.10 -2.13 4.44 -26.73 -0.12 -2.25 16 14 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 15 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 19 Si 0.89 21.97 29.54 -169.99 -5.02 16.94 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H 0.06 0.65 7.86 -51.93 -0.41 0.24 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.66 7.84 -51.92 -0.41 0.25 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.47 7.84 -51.93 -0.41 0.07 16 30 H 0.07 0.57 7.84 -51.93 -0.41 0.16 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 38 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 331.82 15.07 5.00 5.00 Total: -1.00 -31.31 331.82 -7.98 -39.30 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -7.43 Total: -4.00 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -0.67 Total: -15.32 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.60 Total: -15.63 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.31 -7.98 -39.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847702599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.344 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds