Wall clock time and date at job start Mon Mar 30 2020 06:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 110.05240 * 2 1 4 4 C 1.54266 * 110.03236 * 238.58831 * 2 1 3 5 5 C 1.54889 * 104.19262 * 217.10351 * 4 2 1 6 6 C 1.54889 * 102.75184 * 37.93843 * 5 4 2 7 7 C 1.53868 * 110.03347 * 121.41487 * 2 1 3 8 8 H 1.08997 * 110.07691 * 238.59074 * 7 2 1 9 9 O 1.45202 * 110.03302 * 0.02562 * 7 2 1 10 10 C 1.34230 * 116.99836 * 208.62280 * 9 7 2 11 11 O 1.20833 * 119.99930 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00262 * 180.27336 * 10 9 7 13 13 C 1.52996 * 109.47491 * 179.72204 * 12 10 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 10 15 15 C 1.50693 * 109.47293 * 179.97438 * 14 13 12 16 16 H 1.08007 * 120.00180 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00333 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00026 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00350 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47530 * 60.00029 * 19 17 15 21 21 H 1.48499 * 109.47370 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47156 * 299.99594 * 19 17 15 23 23 H 1.09000 * 109.47297 * 298.57998 * 1 2 3 24 24 H 1.09001 * 109.47109 * 58.58579 * 1 2 3 25 25 H 1.09007 * 109.46704 * 178.58244 * 1 2 3 26 26 H 1.08998 * 109.46867 * 181.41648 * 3 2 1 27 27 H 1.09000 * 109.47253 * 301.41946 * 3 2 1 28 28 H 1.08999 * 109.47342 * 61.41391 * 3 2 1 29 29 H 1.08990 * 110.49080 * 98.42734 * 4 2 1 30 30 H 1.09004 * 110.48710 * 335.77836 * 4 2 1 31 31 H 1.08994 * 110.75866 * 279.62554 * 5 4 2 32 32 H 1.09004 * 110.91523 * 156.32923 * 5 4 2 33 33 H 1.08995 * 110.48855 * 203.37758 * 6 5 4 34 34 H 1.08999 * 110.48431 * 80.73651 * 6 5 4 35 35 H 1.09004 * 109.46801 * 299.72165 * 12 10 9 36 36 H 1.09000 * 109.47461 * 59.71633 * 12 10 9 37 37 H 1.09004 * 109.47066 * 299.99799 * 13 12 10 38 38 H 1.08994 * 109.47405 * 59.99969 * 13 12 10 39 39 H 1.08996 * 109.47187 * 300.00268 * 14 13 12 40 40 H 1.09008 * 109.46785 * 59.99617 * 14 13 12 41 41 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0585 -0.7554 -1.2369 5 6 3.3137 -1.5006 -0.7192 6 6 2.8876 -1.9405 0.7035 7 6 2.0571 -0.7535 1.2337 8 1 2.6865 -0.0958 1.8331 9 8 0.9459 -1.2412 2.0310 10 6 1.1551 -1.3756 3.3501 11 8 2.2313 -1.0954 3.8227 12 6 0.0499 -1.8822 4.2405 13 6 0.5484 -1.9470 5.6855 14 6 -0.5739 -2.4608 6.5897 15 6 -0.0827 -2.5252 8.0129 16 1 0.9287 -2.2289 8.2491 17 6 -0.9247 -2.9614 9.0137 18 7 -2.1564 -3.3218 8.7263 19 14 -0.3161 -3.0406 10.7780 20 1 0.0953 -1.6843 11.2211 21 1 -1.4053 -3.5394 11.6555 22 1 0.8458 -3.9618 10.8599 23 1 -0.3634 0.4916 0.9024 24 1 -0.3633 0.5356 -0.8770 25 1 -0.3633 -1.0274 -0.0254 26 1 3.1443 1.4263 -0.0254 27 1 1.6760 1.9623 -0.8770 28 1 1.7173 1.9472 0.9024 29 1 2.3297 -0.0536 -2.0254 30 1 1.3143 -1.4660 -1.5967 31 1 4.1710 -0.8290 -0.6752 32 1 3.5357 -2.3676 -1.3414 33 1 3.7638 -2.1036 1.3309 34 1 2.2773 -2.8425 0.6571 35 1 -0.8035 -1.2067 4.1805 36 1 -0.2513 -2.8779 3.9151 37 1 1.4018 -2.6225 5.7455 38 1 0.8496 -0.9514 6.0110 39 1 -1.4270 -1.7851 6.5296 40 1 -0.8755 -3.4565 6.2643 41 1 -2.7490 -3.6283 9.4304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847702599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:23 Heat of formation + Delta-G solvation = -145.284760 kcal Electronic energy + Delta-G solvation = -19008.453705 eV Core-core repulsion = 16079.102057 eV Total energy + Delta-G solvation = -2929.351648 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.80508 -39.72781 -37.03902 -36.16873 -34.10834 -33.20321 -30.31576 -28.95557 -28.22574 -26.23603 -25.25168 -22.94176 -21.84535 -21.26864 -19.91622 -18.83743 -18.37302 -17.36770 -17.11737 -16.50410 -16.20086 -15.87145 -15.42162 -14.75889 -14.42298 -14.33315 -14.00796 -13.93242 -13.64247 -13.45060 -13.13222 -13.06299 -12.66652 -12.57456 -12.53377 -12.47481 -12.17734 -11.98586 -11.68355 -11.61807 -11.57644 -11.46649 -11.40629 -11.39774 -11.24145 -11.11215 -10.54749 -8.20705 -6.31085 1.19725 1.39958 1.42777 1.50780 1.70816 2.41537 3.12497 3.38851 3.50928 3.69813 3.83995 4.09957 4.16279 4.26489 4.26883 4.31500 4.37866 4.40474 4.63904 4.66140 4.79940 4.86123 4.88096 4.90527 4.95371 5.01745 5.05073 5.09055 5.13346 5.14296 5.23849 5.31249 5.40767 5.49101 5.50980 5.56608 5.71235 5.84766 6.25159 6.78381 6.84223 7.37625 8.90753 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.047226 B = 0.003464 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.750789 B = 8080.618158 C = 8239.289647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.067 4.067 3 C -0.139 4.139 4 C -0.108 4.108 5 C -0.115 4.115 6 C -0.144 4.144 7 C 0.078 3.922 8 H 0.069 0.931 9 O -0.344 6.344 10 C 0.465 3.535 11 O -0.542 6.542 12 C -0.106 4.106 13 C -0.085 4.085 14 C 0.026 3.974 15 C -0.549 4.549 16 H 0.053 0.947 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.963 3.037 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.269 1.269 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.003 0.997 40 H 0.003 0.997 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.286 6.165 -22.835 24.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.067 4.067 3 C -0.196 4.196 4 C -0.145 4.145 5 C -0.153 4.153 6 C -0.181 4.181 7 C 0.023 3.977 8 H 0.087 0.913 9 O -0.260 6.260 10 C 0.310 3.690 11 O -0.432 6.432 12 C -0.143 4.143 13 C -0.123 4.123 14 C -0.011 4.011 15 C -0.587 4.587 16 H 0.072 0.928 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.787 3.213 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.194 1.194 23 H 0.062 0.938 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.459 6.202 -22.659 24.648 hybrid contribution 0.249 -0.146 1.434 1.463 sum 7.708 6.056 -21.224 23.379 Atomic orbital electron populations 1.21667 0.93141 1.02207 1.01618 1.21360 0.97128 0.95561 0.92617 1.21932 1.01350 0.93878 1.02472 1.22487 0.97059 0.99137 0.95857 1.22422 0.98181 1.00957 0.93695 1.22812 0.99174 0.97659 0.98491 1.23806 0.86183 0.96410 0.91316 0.91318 1.86631 1.43249 1.76919 1.19241 1.24202 0.89195 0.73489 0.82099 1.90614 1.28376 1.48083 1.76096 1.21497 0.95710 1.04591 0.92486 1.21262 0.98628 1.00531 0.91893 1.19006 0.93503 0.95266 0.93357 1.21642 0.98686 1.44075 0.94301 0.92831 1.25911 0.95019 0.94763 1.03781 1.70060 1.07039 1.45173 1.34649 0.85542 0.78056 0.78857 0.78849 1.19382 1.20436 1.19390 0.93805 0.90958 0.92471 0.91913 0.90046 0.93743 0.89117 0.90586 0.90553 0.89510 0.92079 0.90748 0.86496 0.86455 0.93467 0.93487 0.97843 0.97847 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 7.41 71.98 0.53 -1.80 16 2 C -0.07 -1.18 0.94 -51.46 -0.05 -1.23 16 3 C -0.14 -2.15 8.15 71.98 0.59 -1.56 16 4 C -0.11 -1.42 5.90 31.67 0.19 -1.24 16 5 C -0.12 -1.64 6.91 31.88 0.22 -1.42 16 6 C -0.14 -3.04 6.56 31.67 0.21 -2.83 16 7 C 0.08 1.88 2.85 31.32 0.09 1.97 16 8 H 0.07 1.92 6.72 -2.39 -0.02 1.90 16 9 O -0.34 -9.80 8.00 -51.41 -0.41 -10.21 16 10 C 0.47 15.73 7.95 71.23 0.57 16.30 16 11 O -0.54 -21.59 15.22 21.94 0.33 -21.25 16 12 C -0.11 -3.57 5.81 29.85 0.17 -3.40 16 13 C -0.09 -3.72 4.44 30.59 0.14 -3.58 16 14 C 0.03 1.36 4.97 29.85 0.15 1.51 16 15 C -0.55 -32.11 9.11 25.60 0.23 -31.87 16 16 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 17 C 0.00 0.20 5.46 84.65 0.46 0.66 16 18 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 19 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H 0.04 0.92 7.86 -2.39 -0.02 0.90 16 24 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 1.10 7.84 -2.38 -0.02 1.08 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 0.87 7.84 -2.39 -0.02 0.85 16 30 H 0.08 0.97 7.84 -2.38 -0.02 0.95 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 35 H 0.12 3.57 8.14 -2.38 -0.02 3.55 16 36 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 37 H 0.05 2.12 8.10 -2.38 -0.02 2.10 16 38 H 0.05 2.11 8.10 -2.39 -0.02 2.09 16 39 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 41 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -67.38 331.82 6.69 -60.69 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 0.97 Total: 8.38 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 3.50 Total: -28.49 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.28 Total: -56.14 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.08 Total: -31.46 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -67.38 6.69 -60.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847702599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.595 kcal (2) G-P(sol) polarization free energy of solvation -67.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds