Wall clock time and date at job start Mon Mar 30 2020 06:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99966 * 2 1 4 4 H 1.09002 * 109.47213 * 29.99597 * 3 2 1 5 5 C 1.53000 * 109.46912 * 270.00095 * 3 2 1 6 6 C 1.53001 * 109.46922 * 299.99982 * 5 3 2 7 7 C 1.53002 * 109.47377 * 300.00042 * 6 5 3 8 8 C 1.53000 * 109.46619 * 59.99932 * 7 6 5 9 9 H 1.08997 * 109.47272 * 60.00715 * 8 7 6 10 10 O 1.42909 * 109.46787 * 180.02562 * 8 7 6 11 11 C 1.42893 * 113.99920 * 265.47345 * 10 8 7 12 12 C 1.53003 * 109.46821 * 184.95821 * 11 10 8 13 13 C 1.50697 * 115.55154 * 39.71519 * 12 11 10 14 14 H 1.08005 * 119.99503 * 264.67837 * 13 12 11 15 15 C 1.37879 * 120.00202 * 84.66947 * 13 12 11 16 16 N 1.31515 * 119.99467 * 184.80602 * 15 13 12 17 17 Si 1.86795 * 120.00106 * 4.80676 * 15 13 12 18 18 H 1.48498 * 109.46998 * 94.69399 * 17 15 13 19 19 H 1.48492 * 109.47245 * 214.69626 * 17 15 13 20 20 H 1.48503 * 109.47078 * 334.69982 * 17 15 13 21 21 C 1.52997 * 117.49980 * 253.99946 * 12 11 10 22 22 C 1.53001 * 60.00380 * 252.51378 * 21 12 11 23 23 C 1.52990 * 109.47121 * 150.00013 * 3 2 1 24 24 H 1.08999 * 109.47040 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47164 * 300.00373 * 1 2 3 26 26 H 1.08995 * 109.47106 * 59.99923 * 1 2 3 27 27 H 1.09000 * 109.47076 * 180.02562 * 5 3 2 28 28 H 1.08996 * 109.47380 * 59.99944 * 5 3 2 29 29 H 1.09007 * 109.47160 * 180.02562 * 6 5 3 30 30 H 1.09004 * 109.47293 * 60.00184 * 6 5 3 31 31 H 1.08997 * 109.46714 * 300.00306 * 7 6 5 32 32 H 1.08993 * 109.47083 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.47642 * 304.95937 * 11 10 8 34 34 H 1.09000 * 109.47297 * 64.96213 * 11 10 8 35 35 H 0.97001 * 119.98973 * 180.02562 * 16 15 13 36 36 H 1.08998 * 117.49897 * 0.02562 * 21 12 11 37 37 H 1.09000 * 117.49652 * 145.02388 * 21 12 11 38 38 H 1.08999 * 117.49671 * 252.51253 * 22 21 12 39 39 H 1.08994 * 117.49673 * 107.48981 * 22 21 12 40 40 H 1.09007 * 109.47319 * 300.00185 * 23 3 2 41 41 H 1.09000 * 109.47412 * 179.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.1514 0.7973 -2.1637 7 6 4.5002 0.7551 -1.4425 8 6 4.2926 0.2892 0.0000 9 1 3.8494 -0.7065 0.0000 10 8 5.5523 0.2504 0.6738 11 6 6.1804 -1.0330 0.6582 12 6 7.4521 -0.9887 1.5078 13 6 7.3528 -0.1962 2.7857 14 1 7.6760 0.8341 2.8086 15 6 6.8492 -0.7863 3.9256 16 7 6.6741 -0.0699 5.0144 17 14 6.4156 -2.6033 3.9232 18 1 7.5643 -3.3869 4.4444 19 1 5.2291 -2.8302 4.7867 20 1 6.1090 -3.0372 2.5364 21 6 8.7934 -0.9782 0.7718 22 6 8.3395 -2.2352 1.5167 23 6 3.3588 1.2633 0.7212 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 2.6614 2.7669 -1.4425 28 1 1.2569 1.8014 -1.9563 29 1 3.2996 1.1294 -3.1913 30 1 2.7081 -0.1985 -2.1637 31 1 4.9434 1.7508 -1.4426 32 1 5.1652 0.0608 -1.9560 33 1 5.4966 -1.7773 1.0663 34 1 6.4375 -1.2993 -0.3670 35 1 6.3202 -0.4852 5.8164 36 1 8.7699 -1.0023 -0.3176 37 1 9.6043 -0.3977 1.2118 38 1 8.8517 -2.4816 2.4467 39 1 8.0173 -3.0866 0.9173 40 1 3.2111 0.9313 1.7489 41 1 3.8024 2.2590 0.7208 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088272197.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:52 Heat of formation + Delta-G solvation = -77.925146 kcal Electronic energy + Delta-G solvation = -19930.082958 eV Core-core repulsion = 17003.652241 eV Total energy + Delta-G solvation = -2926.430716 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.42189 -37.60590 -36.28753 -34.58598 -31.93594 -30.32637 -29.32047 -26.57593 -26.22601 -24.88267 -22.39315 -21.90702 -21.52433 -19.62527 -18.86708 -16.66935 -16.36737 -15.79675 -15.40974 -15.03466 -14.70153 -14.65658 -14.22519 -13.90978 -13.36043 -12.82648 -12.60048 -12.50691 -12.34990 -12.19930 -11.87587 -11.79175 -11.29720 -11.03226 -10.87679 -10.76853 -10.57146 -10.42362 -10.30626 -9.97598 -9.92830 -9.48820 -9.37651 -9.08099 -8.64952 -8.37796 -8.27194 -5.95925 -3.94607 3.36421 3.45726 3.49977 3.81760 4.29206 4.54283 4.82284 4.84747 4.99059 5.14968 5.21351 5.28563 5.32768 5.36450 5.46775 5.56817 5.59054 5.60014 5.72592 5.81776 5.92858 5.97428 6.04887 6.09288 6.12002 6.20182 6.29789 6.34595 6.44986 6.48972 6.54145 6.62204 6.66702 6.77720 7.10627 7.19073 7.24944 7.85515 8.22939 8.68511 9.09489 9.67953 11.16838 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.022894 B = 0.006586 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.739839 B = 4250.695075 C = 4815.822582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.092 3.908 4 H 0.062 0.938 5 C -0.140 4.140 6 C -0.110 4.110 7 C -0.138 4.138 8 C 0.090 3.910 9 H 0.059 0.941 10 O -0.348 6.348 11 C 0.103 3.897 12 C 0.002 3.998 13 C -0.462 4.462 14 H 0.077 0.923 15 C 0.075 3.925 16 N -0.902 5.902 17 Si 0.874 3.126 18 H -0.282 1.282 19 H -0.295 1.295 20 H -0.258 1.258 21 C -0.180 4.180 22 C -0.198 4.198 23 C -0.113 4.113 24 H 0.082 0.918 25 H 0.039 0.961 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.038 0.962 34 H 0.022 0.978 35 H 0.261 0.739 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.530 0.709 -12.995 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.034 3.966 4 H 0.080 0.920 5 C -0.178 4.178 6 C -0.147 4.147 7 C -0.176 4.176 8 C 0.032 3.968 9 H 0.077 0.923 10 O -0.266 6.266 11 C 0.026 3.974 12 C 0.001 3.999 13 C -0.500 4.500 14 H 0.095 0.905 15 C -0.125 4.125 16 N -0.540 5.540 17 Si 0.703 3.297 18 H -0.208 1.208 19 H -0.222 1.222 20 H -0.182 1.182 21 C -0.217 4.217 22 C -0.236 4.236 23 C -0.150 4.150 24 H 0.100 0.900 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.395 0.702 -12.706 16.431 hybrid contribution -0.616 -1.035 -0.026 1.205 sum -11.011 -0.333 -12.731 16.836 Atomic orbital electron populations 1.22749 0.81854 1.02432 0.99570 1.87974 1.18925 1.27950 1.94968 1.22161 0.94807 0.84454 0.95188 0.91988 1.22037 0.99764 0.99774 0.96238 1.21372 0.95308 0.99966 0.98098 1.22027 0.96772 1.02245 0.96532 1.21850 0.85892 0.98601 0.90489 0.92255 1.88105 1.32093 1.30878 1.75571 1.22220 0.94879 0.84546 0.95792 1.19363 0.86753 0.96633 0.97126 1.20126 1.41295 0.98628 0.89923 0.90451 1.24918 0.94617 0.97598 0.95417 1.69911 1.45963 1.35834 1.02294 0.86938 0.77694 0.86614 0.78480 1.20796 1.22189 1.18215 1.22871 1.01037 1.01294 0.96481 1.22969 1.07048 0.91690 1.01849 1.21681 0.92262 1.01028 1.00067 0.89960 0.94191 0.94449 0.90909 0.92222 0.92358 0.91489 0.91414 0.92145 0.94363 0.96036 0.92890 0.91057 0.89528 0.89339 0.91087 0.90309 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 101.05 1.09 1.41 16 2 O -0.38 -5.32 9.00 -35.23 -0.32 -5.64 16 3 C 0.09 1.20 2.92 -26.74 -0.08 1.12 16 4 H 0.06 0.71 7.79 -51.93 -0.40 0.31 16 5 C -0.14 -1.58 5.63 -26.73 -0.15 -1.73 16 6 C -0.11 -1.34 5.78 -26.73 -0.15 -1.50 16 7 C -0.14 -2.05 5.57 -26.73 -0.15 -2.20 16 8 C 0.09 1.63 2.49 -26.73 -0.07 1.56 16 9 H 0.06 1.11 7.20 -51.93 -0.37 0.73 16 10 O -0.35 -7.87 9.36 -35.23 -0.33 -8.20 16 11 C 0.10 2.30 5.69 37.16 0.21 2.51 16 12 C 0.00 0.05 1.20 -155.66 -0.19 -0.13 16 13 C -0.46 -13.40 8.82 -34.44 -0.30 -13.70 16 14 H 0.08 2.47 8.06 -52.48 -0.42 2.05 16 15 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 16 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 17 Si 0.87 22.33 25.20 -169.99 -4.28 18.05 16 18 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 20 H -0.26 -6.22 5.23 56.52 0.30 -5.92 16 21 C -0.18 -3.82 9.88 -26.73 -0.26 -4.08 16 22 C -0.20 -4.35 7.34 -26.73 -0.20 -4.54 16 23 C -0.11 -1.85 5.31 -26.74 -0.14 -2.00 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 26 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.86 7.68 -51.93 -0.40 0.46 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.04 0.88 6.48 -51.93 -0.34 0.54 16 34 H 0.02 0.43 7.95 -51.93 -0.41 0.02 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 37 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 38 H 0.09 2.01 7.14 -51.93 -0.37 1.64 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 319.67 15.07 4.82 4.82 Total: -1.00 -31.75 319.67 -7.25 -39.00 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.42 Total: 0.54 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -0.48 Total: -21.16 kcal Atomic # 7 Polarization: -28.17 SS G_CDS: 0.77 Total: -27.40 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.65 Total: -13.84 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.28 Total: 18.05 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.75 -7.25 -39.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088272197.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.929 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds