Wall clock time and date at job start Mon Mar 30 2020 06:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99966 * 2 1 4 4 H 1.09002 * 109.47213 * 29.99597 * 3 2 1 5 5 C 1.53000 * 109.46912 * 270.00095 * 3 2 1 6 6 C 1.53001 * 109.46922 * 299.99982 * 5 3 2 7 7 C 1.53002 * 109.47377 * 300.00042 * 6 5 3 8 8 C 1.53000 * 109.46619 * 59.99932 * 7 6 5 9 9 H 1.08997 * 109.47272 * 60.00715 * 8 7 6 10 10 O 1.42909 * 109.46787 * 180.02562 * 8 7 6 11 11 C 1.42893 * 113.99920 * 265.47345 * 10 8 7 12 12 C 1.53003 * 109.46821 * 184.95821 * 11 10 8 13 13 C 1.50697 * 115.55154 * 39.71519 * 12 11 10 14 14 H 1.08005 * 119.99503 * 264.67837 * 13 12 11 15 15 C 1.37879 * 120.00202 * 84.66947 * 13 12 11 16 16 N 1.31515 * 119.99467 * 184.80602 * 15 13 12 17 17 Si 1.86795 * 120.00106 * 4.80676 * 15 13 12 18 18 H 1.48498 * 109.46998 * 94.69399 * 17 15 13 19 19 H 1.48492 * 109.47245 * 214.69626 * 17 15 13 20 20 H 1.48503 * 109.47078 * 334.69982 * 17 15 13 21 21 C 1.52997 * 117.49980 * 253.99946 * 12 11 10 22 22 C 1.53001 * 60.00380 * 252.51378 * 21 12 11 23 23 C 1.52990 * 109.47121 * 150.00013 * 3 2 1 24 24 H 1.08999 * 109.47040 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47164 * 300.00373 * 1 2 3 26 26 H 1.08995 * 109.47106 * 59.99923 * 1 2 3 27 27 H 1.09000 * 109.47076 * 180.02562 * 5 3 2 28 28 H 1.08996 * 109.47380 * 59.99944 * 5 3 2 29 29 H 1.09007 * 109.47160 * 180.02562 * 6 5 3 30 30 H 1.09004 * 109.47293 * 60.00184 * 6 5 3 31 31 H 1.08997 * 109.46714 * 300.00306 * 7 6 5 32 32 H 1.08993 * 109.47083 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.47642 * 304.95937 * 11 10 8 34 34 H 1.09000 * 109.47297 * 64.96213 * 11 10 8 35 35 H 0.97001 * 119.98973 * 180.02562 * 16 15 13 36 36 H 1.08998 * 117.49897 * 0.02562 * 21 12 11 37 37 H 1.09000 * 117.49652 * 145.02388 * 21 12 11 38 38 H 1.08999 * 117.49671 * 252.51253 * 22 21 12 39 39 H 1.08994 * 117.49673 * 107.48981 * 22 21 12 40 40 H 1.09007 * 109.47319 * 300.00185 * 23 3 2 41 41 H 1.09000 * 109.47412 * 179.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.1514 0.7973 -2.1637 7 6 4.5002 0.7551 -1.4425 8 6 4.2926 0.2892 0.0000 9 1 3.8494 -0.7065 0.0000 10 8 5.5523 0.2504 0.6738 11 6 6.1804 -1.0330 0.6582 12 6 7.4521 -0.9887 1.5078 13 6 7.3528 -0.1962 2.7857 14 1 7.6760 0.8341 2.8086 15 6 6.8492 -0.7863 3.9256 16 7 6.6741 -0.0699 5.0144 17 14 6.4156 -2.6033 3.9232 18 1 7.5643 -3.3869 4.4444 19 1 5.2291 -2.8302 4.7867 20 1 6.1090 -3.0372 2.5364 21 6 8.7934 -0.9782 0.7718 22 6 8.3395 -2.2352 1.5167 23 6 3.3588 1.2633 0.7212 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 2.6614 2.7669 -1.4425 28 1 1.2569 1.8014 -1.9563 29 1 3.2996 1.1294 -3.1913 30 1 2.7081 -0.1985 -2.1637 31 1 4.9434 1.7508 -1.4426 32 1 5.1652 0.0608 -1.9560 33 1 5.4966 -1.7773 1.0663 34 1 6.4375 -1.2993 -0.3670 35 1 6.3202 -0.4852 5.8164 36 1 8.7699 -1.0023 -0.3176 37 1 9.6043 -0.3977 1.2118 38 1 8.8517 -2.4816 2.4467 39 1 8.0173 -3.0866 0.9173 40 1 3.2111 0.9313 1.7489 41 1 3.8024 2.2590 0.7208 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088272197.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:51 Heat of formation + Delta-G solvation = -98.423662 kcal Electronic energy + Delta-G solvation = -19930.971840 eV Core-core repulsion = 17003.652241 eV Total energy + Delta-G solvation = -2927.319598 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.59395 -39.18261 -37.77364 -35.86911 -34.18574 -31.47558 -30.50326 -28.19553 -27.36869 -26.84588 -23.50393 -23.37959 -22.98902 -21.05257 -20.53183 -18.48652 -17.74302 -17.11757 -16.84504 -16.44629 -16.03867 -15.95797 -15.76094 -15.43048 -14.78520 -14.58724 -14.18033 -13.81715 -13.53203 -13.44997 -13.39244 -13.02551 -12.88010 -12.66834 -12.23229 -12.18259 -12.01524 -11.88265 -11.76421 -11.59422 -11.30904 -11.15392 -11.00081 -10.60885 -10.46194 -10.30706 -9.99107 -8.24206 -6.27221 1.33136 1.35922 1.48268 2.39312 2.77251 2.88387 3.11536 3.31191 3.76246 3.83103 4.00176 4.19027 4.20812 4.28744 4.32115 4.34461 4.42682 4.50001 4.51621 4.53927 4.61426 4.67267 4.71884 4.76779 4.84011 4.84348 4.95929 5.04099 5.06618 5.09314 5.21443 5.25842 5.31333 5.36623 5.48075 5.48961 5.74481 6.32751 6.34101 6.63679 6.82161 7.38850 8.92701 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.022894 B = 0.006586 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.739839 B = 4250.695075 C = 4815.822582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.096 3.904 4 H 0.078 0.922 5 C -0.136 4.136 6 C -0.104 4.104 7 C -0.131 4.131 8 C 0.085 3.915 9 H 0.050 0.950 10 O -0.385 6.385 11 C 0.109 3.891 12 C -0.037 4.037 13 C -0.461 4.461 14 H 0.024 0.976 15 C 0.016 3.984 16 N -0.954 5.954 17 Si 0.935 3.065 18 H -0.268 1.268 19 H -0.300 1.300 20 H -0.231 1.231 21 C -0.162 4.162 22 C -0.185 4.185 23 C -0.115 4.115 24 H 0.091 0.909 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.028 0.972 34 H 0.053 0.947 35 H 0.262 0.738 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.044 0.956 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.532 -0.729 -15.932 19.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.038 3.962 4 H 0.096 0.904 5 C -0.173 4.173 6 C -0.142 4.142 7 C -0.169 4.169 8 C 0.027 3.973 9 H 0.068 0.932 10 O -0.304 6.304 11 C 0.033 3.967 12 C -0.038 4.038 13 C -0.499 4.499 14 H 0.042 0.958 15 C -0.180 4.180 16 N -0.595 5.595 17 Si 0.760 3.240 18 H -0.194 1.194 19 H -0.228 1.228 20 H -0.154 1.154 21 C -0.199 4.199 22 C -0.222 4.222 23 C -0.153 4.153 24 H 0.109 0.891 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.062 0.938 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.392 -0.737 -15.675 19.391 hybrid contribution -0.290 -0.467 0.906 1.060 sum -11.682 -1.204 -14.768 18.868 Atomic orbital electron populations 1.22949 0.79889 1.03511 1.00793 1.87927 1.21130 1.28384 1.95202 1.22117 0.92891 0.84777 0.96395 0.90409 1.22031 1.00908 0.99776 0.94622 1.21353 0.93603 1.00152 0.99060 1.21959 0.98685 1.01889 0.94344 1.22094 0.84220 0.98627 0.92355 0.93195 1.88060 1.34145 1.31262 1.76939 1.22104 0.93489 0.84321 0.96830 1.19367 0.89357 0.98791 0.96304 1.20244 1.40217 0.96898 0.92541 0.95793 1.25785 0.94747 1.02561 0.94874 1.70071 1.48012 1.38119 1.03261 0.85953 0.77512 0.80771 0.79759 1.19359 1.22758 1.15422 1.22926 0.98377 1.00349 0.98256 1.23017 1.05072 0.92125 1.02029 1.21706 0.94534 1.00374 0.98692 0.89077 0.93764 0.92370 0.89986 0.89749 0.89904 0.92011 0.91611 0.91991 0.95416 0.92904 0.92907 0.87589 0.90440 0.90403 0.87725 0.93752 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.82 113.37 1.23 1.67 16 2 O -0.41 -10.87 9.00 -148.98 -1.34 -12.21 16 3 C 0.10 2.38 2.92 30.59 0.09 2.47 16 4 H 0.08 1.66 7.79 -2.39 -0.02 1.64 16 5 C -0.14 -2.66 5.63 30.59 0.17 -2.48 16 6 C -0.10 -2.24 5.78 30.60 0.18 -2.06 16 7 C -0.13 -3.68 5.57 30.60 0.17 -3.50 16 8 C 0.08 3.05 2.49 30.59 0.08 3.13 16 9 H 0.05 1.86 7.20 -2.39 -0.02 1.84 16 10 O -0.38 -17.66 9.36 -148.98 -1.39 -19.06 16 11 C 0.11 4.77 5.69 71.98 0.41 5.17 16 12 C -0.04 -1.79 1.20 -52.93 -0.06 -1.86 16 13 C -0.46 -27.73 8.82 25.60 0.23 -27.51 16 14 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 15 C 0.02 0.99 5.47 84.66 0.46 1.46 16 16 N -0.95 -62.40 13.96 21.45 0.30 -62.10 16 17 Si 0.94 46.33 25.20 68.60 1.73 48.05 16 18 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 20 H -0.23 -10.38 5.23 99.48 0.52 -9.86 16 21 C -0.16 -6.53 9.88 30.59 0.30 -6.22 16 22 C -0.19 -7.59 7.34 30.60 0.22 -7.36 16 23 C -0.12 -3.88 5.31 30.59 0.16 -3.72 16 24 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.04 0.76 8.09 -2.39 -0.02 0.74 16 26 H 0.06 0.81 7.87 -2.39 -0.02 0.80 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.29 7.87 -2.39 -0.02 1.27 16 29 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.06 1.42 7.68 -2.38 -0.02 1.40 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.03 1.24 6.48 -2.39 -0.02 1.22 16 34 H 0.05 1.95 7.95 -2.39 -0.02 1.93 16 35 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 36 H 0.11 3.54 8.08 -2.39 -0.02 3.52 16 37 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.08 3.35 7.14 -2.39 -0.02 3.34 16 39 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 40 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -72.30 319.67 3.71 -68.59 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.78 Total: 17.53 kcal Atomic # 6 Polarization: -44.45 SS G_CDS: 3.64 Total: -40.81 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: 0.30 Total: -62.10 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -2.74 Total: -31.26 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.73 Total: 48.05 kcal Total: -72.30 3.71 -68.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088272197.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.833 kcal (2) G-P(sol) polarization free energy of solvation -72.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds