Wall clock time and date at job start Mon Mar 30 2020 06:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47394 * 2 1 4 4 C 1.50698 * 109.46815 * 120.00166 * 2 1 3 5 5 H 1.08010 * 120.00028 * 119.99858 * 4 2 1 6 6 C 1.37878 * 120.00110 * 299.99749 * 4 2 1 7 7 N 1.31515 * 119.99892 * 180.02562 * 6 4 2 8 8 Si 1.86793 * 120.00117 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47480 * 89.99458 * 8 6 4 10 10 H 1.48493 * 109.47295 * 210.00035 * 8 6 4 11 11 H 1.48505 * 109.47130 * 329.99806 * 8 6 4 12 12 O 1.45203 * 109.47099 * 239.99897 * 2 1 3 13 13 C 1.34226 * 116.99798 * 90.00574 * 12 2 1 14 14 O 1.20824 * 119.99959 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99900 * 180.02562 * 13 12 2 16 16 C 1.53000 * 109.46912 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47060 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47242 * 295.00551 * 17 16 15 19 19 C 1.52997 * 109.47242 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.47380 * 59.99720 * 19 18 17 21 21 C 1.53002 * 109.46654 * 300.00174 * 20 19 18 22 22 C 1.52994 * 109.47404 * 175.00005 * 17 16 15 23 23 H 1.08991 * 109.47291 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47198 * 300.00153 * 1 2 3 25 25 H 1.09003 * 109.46308 * 59.99827 * 1 2 3 26 26 H 0.97001 * 119.99523 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46980 * 59.99650 * 15 13 12 28 28 H 1.08992 * 109.47158 * 299.99756 * 15 13 12 29 29 H 1.09002 * 109.47398 * 300.00078 * 16 15 13 30 30 H 1.09001 * 109.47194 * 60.00258 * 16 15 13 31 31 H 1.09008 * 109.47017 * 55.00082 * 17 16 15 32 32 H 1.09008 * 109.46731 * 299.99706 * 18 17 16 33 33 H 1.08998 * 109.47430 * 59.99652 * 18 17 16 34 34 H 1.08998 * 109.46934 * 299.99660 * 19 18 17 35 35 H 1.09000 * 109.47325 * 179.97438 * 19 18 17 36 36 H 1.08992 * 109.47003 * 180.02562 * 20 19 18 37 37 H 1.08998 * 109.46692 * 59.99766 * 20 19 18 38 38 H 1.08995 * 109.46734 * 299.99283 * 21 20 19 39 39 H 1.09002 * 109.46264 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.47476 * 300.00087 * 22 17 16 41 41 H 1.09008 * 109.46970 * 60.00049 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5887 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6248 1.2790 2.6542 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9950 3.9068 11 1 0.8472 2.1765 1.4921 12 8 2.0141 -0.6845 -1.1856 13 6 2.2173 0.0640 -2.2811 14 8 1.9976 1.2517 -2.2505 15 6 2.7184 -0.5772 -3.5495 16 6 2.8626 0.4889 -4.6373 17 6 3.3720 -0.1620 -5.9249 18 6 4.7851 -0.7031 -5.6984 19 6 5.2941 -1.3545 -6.9858 20 6 5.3199 -0.3147 -8.1079 21 6 3.9068 0.2263 -8.3343 22 6 3.3978 0.8782 -7.0466 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 1.9033 -0.5279 4.4375 27 1 2.0088 -1.3369 -3.8774 28 1 3.6872 -1.0409 -3.3640 29 1 1.8936 0.9523 -4.8227 30 1 3.5720 1.2488 -4.3096 31 1 2.7096 -0.9814 -6.2044 32 1 5.4474 0.1163 -5.4189 33 1 4.7667 -1.4441 -4.8993 34 1 4.6318 -2.1739 -7.2648 35 1 6.3010 -1.7396 -6.8246 36 1 5.6822 -0.7790 -9.0251 37 1 5.9823 0.5047 -7.8288 38 1 3.2445 -0.5932 -8.6135 39 1 3.9251 0.9667 -9.1341 40 1 2.3911 1.2636 -7.2080 41 1 4.0601 1.6976 -6.7670 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113692650.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:43 Heat of formation + Delta-G solvation = -127.793307 kcal Electronic energy + Delta-G solvation = -18980.858171 eV Core-core repulsion = 16052.265010 eV Total energy + Delta-G solvation = -2928.593162 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.82874 -38.82334 -36.03431 -33.90144 -33.17093 -30.96797 -30.71586 -29.43455 -25.32717 -24.82501 -22.81449 -21.88866 -20.69843 -19.88317 -19.52241 -17.25982 -16.54019 -15.95941 -15.68303 -15.33214 -14.70742 -14.43848 -14.18910 -14.13675 -13.51698 -13.02048 -12.92626 -12.52492 -12.32695 -12.22567 -12.09745 -11.83393 -11.56185 -11.47960 -11.28407 -11.19001 -10.89254 -10.84322 -10.56561 -10.22227 -10.20496 -10.07235 -9.94227 -9.74162 -9.53330 -9.11227 -8.68459 -6.22499 -4.24667 2.89357 3.18710 3.30949 3.33482 3.54288 4.26907 4.50457 4.52899 4.59656 4.92061 4.98524 5.08589 5.16188 5.21674 5.28639 5.32866 5.35732 5.43063 5.49597 5.58415 5.73903 5.78727 5.84036 5.88854 5.98272 5.99275 6.05847 6.12611 6.17599 6.18340 6.29113 6.30371 6.40692 6.42252 6.62297 7.04944 7.39350 7.54985 8.25339 8.63785 8.84939 9.34914 10.89708 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.048471 B = 0.003770 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.531914 B = 7424.672780 C = 7733.518403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.190 3.810 3 H 0.045 0.955 4 C -0.525 4.525 5 H 0.087 0.913 6 C 0.079 3.921 7 N -0.889 5.889 8 Si 0.880 3.120 9 H -0.273 1.273 10 H -0.290 1.290 11 H -0.263 1.263 12 O -0.344 6.344 13 C 0.450 3.550 14 O -0.526 6.526 15 C -0.116 4.116 16 C -0.103 4.103 17 C -0.086 4.086 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.115 4.115 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.036 0.964 26 H 0.269 0.731 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.254 0.624 -21.907 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.136 3.864 3 H 0.063 0.937 4 C -0.563 4.563 5 H 0.105 0.895 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.709 3.291 9 H -0.200 1.200 10 H -0.217 1.217 11 H -0.187 1.187 12 O -0.259 6.259 13 C 0.293 3.707 14 O -0.416 6.416 15 C -0.154 4.154 16 C -0.141 4.141 17 C -0.105 4.105 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.152 4.152 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.184 0.958 -21.630 21.884 hybrid contribution -0.689 0.840 0.381 1.151 sum 2.495 1.798 -21.248 21.470 Atomic orbital electron populations 1.22514 0.98558 1.01802 0.99771 1.20897 0.90428 0.94431 0.80658 0.93704 1.20806 1.33345 1.14792 0.87329 0.89524 1.24740 0.95677 0.96749 0.95256 1.69843 1.44779 1.39995 0.97989 0.86956 0.80744 0.83636 0.77743 1.20003 1.21679 1.18735 1.86513 1.75702 1.42894 1.20837 1.23609 0.74673 0.86065 0.86320 1.90585 1.49035 1.17109 1.84872 1.21420 1.03645 0.99817 0.90516 1.21459 1.02570 0.97243 0.92798 1.21177 0.96811 0.98001 0.94467 1.21692 0.96148 1.00521 0.97415 1.21536 1.00959 0.98017 0.95202 1.21545 0.97058 0.98818 0.98358 1.21539 0.96624 1.00085 0.97412 1.21581 1.01219 0.97998 0.94403 0.91810 0.92588 0.94469 0.92080 0.88314 0.87984 0.91121 0.91033 0.91037 0.91817 0.91440 0.92062 0.92152 0.92402 0.92092 0.92102 0.92294 0.91970 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 9.03 37.16 0.34 -3.59 16 2 C 0.19 4.88 2.15 -27.88 -0.06 4.82 16 3 H 0.05 1.22 6.21 -51.93 -0.32 0.90 16 4 C -0.53 -15.27 9.48 -34.44 -0.33 -15.60 16 5 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 6 C 0.08 2.29 5.45 -17.82 -0.10 2.19 16 7 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 8 Si 0.88 21.92 24.37 -169.99 -4.14 17.78 16 9 H -0.27 -6.52 6.87 56.52 0.39 -6.13 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.26 -6.47 6.53 56.52 0.37 -6.10 16 12 O -0.34 -7.95 9.86 -39.25 -0.39 -8.34 16 13 C 0.45 8.89 7.93 36.01 0.29 9.18 16 14 O -0.53 -11.70 15.20 -18.75 -0.28 -11.99 16 15 C -0.12 -1.58 5.57 -27.88 -0.16 -1.74 16 16 C -0.10 -1.24 3.97 -26.73 -0.11 -1.35 16 17 C -0.09 -0.81 2.19 -90.62 -0.20 -1.01 16 18 C -0.12 -1.09 4.96 -26.73 -0.13 -1.22 16 19 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 20 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 21 C -0.12 -0.91 5.92 -26.70 -0.16 -1.07 16 22 C -0.11 -1.00 5.21 -26.71 -0.14 -1.14 16 23 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 24 H 0.06 1.32 3.27 -51.93 -0.17 1.15 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.10 1.25 6.56 -51.93 -0.34 0.91 16 29 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 30 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 31 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 32 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.07 0.62 6.56 -51.93 -0.34 0.28 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -31.53 318.62 -7.42 -38.96 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -7.12 Total: -2.32 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -1.07 Total: -12.70 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.77 Total: -26.19 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.67 Total: -20.33 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.14 Total: 17.78 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.53 -7.42 -38.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692650.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.838 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds