Wall clock time and date at job start Mon Mar 30 2020 06:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00425 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00108 * 8 6 4 12 12 O 1.45206 * 109.47147 * 119.99956 * 2 1 3 13 13 C 1.34224 * 117.00063 * 269.99753 * 12 2 1 14 14 O 1.20827 * 119.99784 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00259 * 179.97438 * 13 12 2 16 16 H 1.09004 * 109.46984 * 300.00023 * 15 13 12 17 17 C 1.52995 * 109.46884 * 59.99858 * 15 13 12 18 18 C 1.53000 * 109.47249 * 180.02562 * 15 13 12 19 19 C 1.53004 * 109.46836 * 174.99865 * 18 15 13 20 20 C 1.54264 * 110.03364 * 292.16579 * 19 18 15 21 21 C 1.54887 * 104.19641 * 217.10762 * 20 19 18 22 22 C 1.54896 * 102.74801 * 37.94052 * 21 20 19 23 23 C 1.53880 * 110.02856 * 174.99811 * 19 18 15 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.47435 * 60.00723 * 17 15 13 29 29 H 1.09009 * 109.47135 * 179.97438 * 17 15 13 30 30 H 1.08997 * 109.47549 * 300.00170 * 17 15 13 31 31 H 1.08996 * 109.47061 * 294.99861 * 18 15 13 32 32 H 1.08996 * 109.47161 * 55.00179 * 18 15 13 33 33 H 1.09000 * 110.01522 * 53.60811 * 19 18 15 34 34 H 1.09002 * 110.48524 * 335.78179 * 20 19 18 35 35 H 1.09002 * 110.48641 * 98.42878 * 20 19 18 36 36 H 1.09000 * 110.75869 * 279.63073 * 21 20 19 37 37 H 1.09001 * 110.91706 * 156.33206 * 21 20 19 38 38 H 1.09000 * 110.48380 * 203.37542 * 22 21 20 39 39 H 1.09003 * 110.59443 * 80.79115 * 22 21 20 40 40 H 1.08994 * 110.02903 * 238.56749 * 23 19 18 41 41 H 1.08994 * 110.03230 * 359.95358 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 8 2.0140 -0.6845 1.1856 13 6 2.2172 0.0640 2.2811 14 8 1.9974 1.2517 2.2505 15 6 2.7183 -0.5772 3.5495 16 1 2.0087 -1.3369 3.8775 17 6 4.0782 -1.2281 3.2891 18 6 2.8624 0.4889 4.6374 19 6 3.2509 -0.1793 5.9579 20 6 2.0813 -1.0398 6.4788 21 6 2.1259 -0.8512 8.0155 22 6 2.5066 0.6427 8.1656 23 6 3.5213 0.8905 7.0304 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7089 1.1613 -3.4844 28 1 4.7878 -0.4684 2.9612 29 1 4.4409 -1.6915 4.2067 30 1 3.9751 -1.9876 2.5142 31 1 3.6362 1.2002 4.3488 32 1 1.9147 1.0129 4.7605 33 1 4.1368 -0.7984 5.8163 34 1 1.1341 -0.6792 6.0776 35 1 2.2329 -2.0874 6.2185 36 1 2.8880 -1.4906 8.4613 37 1 1.1504 -1.0479 8.4602 38 1 2.9684 0.8230 9.1363 39 1 1.6291 1.2766 8.0380 40 1 4.5380 0.7900 7.4099 41 1 3.3766 1.8856 6.6099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114623893.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:17 Heat of formation + Delta-G solvation = -129.432788 kcal Electronic energy + Delta-G solvation = -19266.294713 eV Core-core repulsion = 16337.630458 eV Total energy + Delta-G solvation = -2928.664255 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.79145 -38.47199 -35.80413 -34.25234 -33.19415 -29.87119 -29.18002 -28.71935 -25.67422 -25.30024 -23.57763 -21.17958 -20.68520 -19.53341 -19.00493 -16.86402 -16.54071 -16.01082 -15.54235 -15.10568 -14.87354 -14.40947 -14.06112 -13.45917 -13.18212 -12.94858 -12.80772 -12.12263 -11.98214 -11.74693 -11.41856 -11.32932 -11.21242 -11.16650 -11.05181 -11.01577 -10.82879 -10.75890 -10.56230 -10.48727 -10.35960 -10.27861 -10.26006 -9.51597 -9.39478 -8.87919 -8.46871 -6.16374 -4.23298 3.08583 3.27232 3.30541 3.33084 3.72112 4.34404 4.47573 4.53930 4.68097 5.01099 5.12053 5.16511 5.25801 5.34502 5.42291 5.48683 5.50341 5.55738 5.62818 5.74867 5.78860 5.89959 5.94865 5.97337 6.06024 6.09709 6.18190 6.21487 6.32684 6.41244 6.51750 6.67557 6.91180 6.94985 7.22517 7.62450 7.75987 7.97850 8.17575 8.68991 8.93227 9.42153 10.91068 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.047090 B = 0.004022 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.468011 B = 6960.252895 C = 7136.363297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.045 0.955 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.275 1.275 12 O -0.356 6.356 13 C 0.454 3.546 14 O -0.524 6.524 15 C -0.086 4.086 16 H 0.100 0.900 17 C -0.143 4.143 18 C -0.096 4.096 19 C -0.093 4.093 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.121 4.121 24 H 0.099 0.901 25 H 0.015 0.985 26 H 0.036 0.964 27 H 0.266 0.734 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.890 -3.448 17.956 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.063 0.937 4 C -0.559 4.559 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.272 6.272 13 C 0.296 3.704 14 O -0.414 6.414 15 C -0.105 4.105 16 H 0.118 0.882 17 C -0.200 4.200 18 C -0.133 4.133 19 C -0.112 4.112 20 C -0.161 4.161 21 C -0.163 4.163 22 C -0.163 4.163 23 C -0.159 4.159 24 H 0.117 0.883 25 H 0.034 0.966 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.725 -2.973 17.731 18.361 hybrid contribution 0.141 -0.236 -0.944 0.983 sum 3.866 -3.208 16.787 17.523 Atomic orbital electron populations 1.22154 0.97676 1.00030 1.01333 1.20597 0.91322 0.93895 0.77998 0.93693 1.20998 1.32469 1.13432 0.88970 0.91401 1.24892 0.94956 0.95100 0.99058 1.69896 1.36098 1.22552 1.24227 0.86333 0.79212 0.79537 0.81046 1.19938 1.21044 1.19992 1.86476 1.75671 1.43686 1.21392 1.23428 0.74668 0.85978 0.86282 1.90581 1.48929 1.17097 1.84809 1.21011 0.99435 0.99057 0.91016 0.88169 1.21775 0.94709 1.01218 1.02311 1.21596 1.02927 0.96658 0.92157 1.21861 0.98545 0.96506 0.94259 1.22505 0.98751 0.99774 0.95085 1.22490 1.01014 0.96366 0.96407 1.22358 0.99115 0.96592 0.98211 1.22208 0.98936 0.99258 0.95505 0.88296 0.96608 0.94482 0.92377 0.92284 0.91636 0.91040 0.91215 0.90995 0.90579 0.91295 0.91608 0.91748 0.91859 0.92094 0.91711 0.92028 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.33 37.16 0.35 -3.66 16 2 C 0.21 5.89 2.56 -27.88 -0.07 5.82 16 3 H 0.05 1.37 7.16 -51.93 -0.37 0.99 16 4 C -0.52 -14.85 8.90 -34.44 -0.31 -15.16 16 5 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.64 11.32 55.43 0.63 -25.01 16 8 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 12 O -0.36 -8.65 9.77 -39.24 -0.38 -9.04 16 13 C 0.45 9.66 7.23 36.01 0.26 9.92 16 14 O -0.52 -12.63 15.14 -18.75 -0.28 -12.92 16 15 C -0.09 -1.30 2.75 -91.77 -0.25 -1.55 16 16 H 0.10 1.37 7.37 -51.93 -0.38 0.98 16 17 C -0.14 -1.90 8.89 37.15 0.33 -1.57 16 18 C -0.10 -1.28 3.16 -26.73 -0.08 -1.37 16 19 C -0.09 -0.96 2.80 -89.50 -0.25 -1.21 16 20 C -0.12 -1.20 5.45 -25.07 -0.14 -1.33 16 21 C -0.13 -1.06 6.91 -24.74 -0.17 -1.23 16 22 C -0.13 -1.08 6.83 -25.07 -0.17 -1.25 16 23 C -0.12 -1.15 6.46 -25.61 -0.17 -1.32 16 24 H 0.10 2.73 6.07 -51.93 -0.32 2.42 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.68 6.45 -51.92 -0.33 0.34 16 30 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.05 7.82 -51.93 -0.41 0.64 16 33 H 0.08 0.74 6.33 -51.93 -0.33 0.41 16 34 H 0.07 0.73 7.76 -51.93 -0.40 0.32 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.67 7.67 -51.93 -0.40 0.27 16 LS Contribution 325.92 15.07 4.91 4.91 Total: -1.00 -30.58 325.92 -8.05 -38.63 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -7.13 Total: -0.55 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -0.77 Total: -12.28 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.63 Total: -25.01 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.67 Total: -21.95 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.58 -8.05 -38.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114623893.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.804 kcal (2) G-P(sol) polarization free energy of solvation -30.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds