Wall clock time and date at job start Mon Mar 30 2020 06:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 O 1.45200 * 109.47076 * 240.00601 * 2 1 3 13 13 C 1.34225 * 117.00537 * 89.99893 * 12 2 1 14 14 O 1.20829 * 119.99778 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00501 * 180.02562 * 13 12 2 16 16 C 1.53003 * 109.47014 * 300.00044 * 15 13 12 17 17 C 1.53006 * 109.47066 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47038 * 60.00226 * 17 16 15 19 19 C 1.53000 * 109.47299 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47041 * 59.99716 * 18 17 16 21 21 C 1.53003 * 109.47007 * 299.99810 * 18 17 16 22 22 C 1.53001 * 109.47295 * 180.02562 * 15 13 12 23 23 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 24 24 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.47317 * 60.00268 * 15 13 12 28 28 H 1.09002 * 109.47183 * 299.99729 * 16 15 13 29 29 H 1.09001 * 109.47174 * 60.00106 * 16 15 13 30 30 H 1.08993 * 109.47311 * 300.00044 * 17 16 15 31 31 H 1.08997 * 109.47220 * 179.97438 * 17 16 15 32 32 H 1.08997 * 109.47489 * 180.02562 * 19 18 17 33 33 H 1.09007 * 109.46655 * 299.99994 * 19 18 17 34 34 H 1.08993 * 109.47307 * 59.99661 * 19 18 17 35 35 H 1.08994 * 109.47274 * 299.99641 * 20 18 17 36 36 H 1.08997 * 109.47207 * 60.00405 * 20 18 17 37 37 H 1.09009 * 109.46812 * 180.02562 * 20 18 17 38 38 H 1.08993 * 109.47091 * 300.00028 * 21 18 17 39 39 H 1.09001 * 109.47174 * 179.97438 * 21 18 17 40 40 H 1.08999 * 109.47166 * 299.99592 * 22 15 13 41 41 H 1.09002 * 109.47308 * 60.00023 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2520 -2.2503 15 6 2.7182 -0.5770 -3.5495 16 6 4.0782 -1.2278 -3.2892 17 6 4.5866 -1.8793 -4.5769 18 6 4.7313 -0.8134 -5.6650 19 6 5.2391 -1.4649 -6.9528 20 6 5.7274 0.2530 -5.2051 21 6 3.3713 -0.1626 -5.9253 22 6 2.8635 0.4894 -4.6371 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7006 1.1552 3.4844 27 1 2.0086 -1.3366 -3.8776 28 1 4.7877 -0.4681 -2.9612 29 1 3.9751 -1.9875 -2.5143 30 1 3.8771 -2.6390 -4.9045 31 1 5.5557 -2.3426 -4.3916 32 1 5.3426 -0.7056 -7.7279 33 1 6.2079 -1.9290 -6.7676 34 1 4.5292 -2.2244 -7.2803 35 1 5.3651 0.7171 -4.2879 36 1 6.6962 -0.2107 -5.0197 37 1 5.8300 1.0126 -5.9802 38 1 2.6617 -0.9223 -6.2529 39 1 3.4744 0.5971 -6.7002 40 1 1.8948 0.9534 -4.8227 41 1 3.5733 1.2488 -4.3088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132302136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:22 Heat of formation + Delta-G solvation = -143.834023 kcal Electronic energy + Delta-G solvation = -19707.081148 eV Core-core repulsion = 16777.792409 eV Total energy + Delta-G solvation = -2929.288740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.67525 -39.99351 -37.59028 -35.36528 -34.35826 -31.84300 -31.57428 -28.14958 -28.04223 -27.46852 -24.36281 -23.61295 -22.54562 -21.02799 -19.34039 -18.86933 -18.37630 -17.35931 -16.84449 -16.45279 -15.87837 -15.71077 -15.00067 -14.83906 -14.54678 -14.12141 -14.02283 -13.81649 -13.41303 -13.22594 -13.15110 -12.94808 -12.85130 -12.77071 -12.52082 -12.40241 -12.34655 -12.15529 -11.89907 -11.88665 -11.60634 -11.49241 -11.11056 -11.03046 -10.90841 -10.85786 -10.61002 -8.30088 -6.47388 1.33644 1.40887 1.43003 1.54808 2.03865 2.41487 3.00474 3.60404 3.72541 3.73773 4.06560 4.10452 4.19929 4.32862 4.42614 4.51095 4.56095 4.57154 4.69201 4.74799 4.80706 4.90302 4.93030 4.97213 5.08999 5.11103 5.12667 5.15196 5.18526 5.25217 5.26564 5.35415 5.47023 5.53882 5.54617 5.60830 5.66541 5.90833 6.08873 6.58307 6.97463 7.25101 8.77842 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.035970 B = 0.004759 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.245109 B = 5882.232064 C = 6291.242070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.215 3.785 3 H 0.003 0.997 4 C -0.548 4.548 5 H 0.068 0.932 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.984 3.016 9 H -0.272 1.272 10 H -0.275 1.275 11 H -0.261 1.261 12 O -0.361 6.361 13 C 0.445 3.555 14 O -0.557 6.557 15 C -0.070 4.070 16 C -0.110 4.110 17 C -0.098 4.098 18 C -0.067 4.067 19 C -0.135 4.135 20 C -0.148 4.148 21 C -0.099 4.099 22 C -0.102 4.102 23 H 0.021 0.979 24 H 0.046 0.954 25 H 0.081 0.919 26 H 0.271 0.729 27 H 0.122 0.878 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.041 0.959 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.530 -6.158 -17.275 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.162 3.838 3 H 0.021 0.979 4 C -0.585 4.585 5 H 0.086 0.914 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.807 3.193 9 H -0.197 1.197 10 H -0.200 1.200 11 H -0.186 1.186 12 O -0.278 6.278 13 C 0.291 3.709 14 O -0.449 6.449 15 C -0.089 4.089 16 C -0.148 4.148 17 C -0.135 4.135 18 C -0.067 4.067 19 C -0.192 4.192 20 C -0.205 4.205 21 C -0.136 4.136 22 C -0.139 4.139 23 H 0.040 0.960 24 H 0.066 0.934 25 H 0.100 0.900 26 H 0.080 0.920 27 H 0.140 0.860 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.363 -5.699 -17.087 19.460 hybrid contribution -0.169 0.421 1.275 1.354 sum 7.194 -5.278 -15.812 18.156 Atomic orbital electron populations 1.21980 0.96827 1.00404 1.00741 1.20328 0.92009 0.91971 0.79506 0.97877 1.21294 1.33334 1.13962 0.89933 0.91413 1.25856 0.94633 0.95689 1.02210 1.70021 1.36556 1.23814 1.25234 0.85166 0.78134 0.78965 0.77051 1.19721 1.19960 1.18551 1.86478 1.76010 1.43769 1.21518 1.24760 0.73461 0.85804 0.86921 1.90558 1.50327 1.18729 1.85285 1.21219 1.00060 0.99667 0.87974 1.21546 0.93314 1.00015 0.99900 1.21588 1.02039 0.97438 0.92484 1.20595 0.94936 0.95270 0.95925 1.21802 1.01267 1.00596 0.95558 1.21998 0.98902 0.98720 1.00900 1.21606 0.96440 1.00306 0.95265 1.21464 1.01660 0.96443 0.94352 0.95973 0.93447 0.90039 0.91977 0.86047 0.92487 0.91425 0.90290 0.90410 0.92161 0.92188 0.91857 0.94026 0.92125 0.92126 0.90343 0.90401 0.92271 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.56 9.32 71.98 0.67 -6.88 16 2 C 0.22 12.25 2.56 29.85 0.08 12.32 16 3 H 0.00 0.22 7.16 -2.38 -0.02 0.20 16 4 C -0.55 -31.78 8.90 25.60 0.23 -31.55 16 5 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -53.69 11.31 21.45 0.24 -53.45 16 8 Si 0.98 43.32 29.54 68.60 2.03 45.34 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 11 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 12 O -0.36 -18.02 9.77 -51.37 -0.50 -18.52 16 13 C 0.45 19.52 7.23 71.23 0.51 20.03 16 14 O -0.56 -28.09 15.20 21.95 0.33 -27.75 16 15 C -0.07 -2.12 2.63 -11.54 -0.03 -2.15 16 16 C -0.11 -2.94 4.86 30.60 0.15 -2.79 16 17 C -0.10 -1.82 4.73 30.60 0.14 -1.67 16 18 C -0.07 -1.13 0.77 -52.18 -0.04 -1.17 16 19 C -0.14 -1.70 8.47 71.98 0.61 -1.09 16 20 C -0.15 -2.78 7.78 71.98 0.56 -2.22 16 21 C -0.10 -1.80 4.73 30.61 0.14 -1.65 16 22 C -0.10 -2.69 4.22 30.61 0.13 -2.56 16 23 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.08 4.63 6.06 -2.38 -0.01 4.62 16 26 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 27 H 0.12 3.15 8.14 -2.38 -0.02 3.13 16 28 H 0.06 1.65 6.43 -2.39 -0.02 1.64 16 29 H 0.07 1.95 8.11 -2.39 -0.02 1.93 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.70 8.14 -2.38 -0.02 0.69 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.04 0.97 4.81 -2.39 -0.01 0.96 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 1.66 8.10 -2.39 -0.02 1.65 16 41 H 0.06 1.72 6.39 -2.39 -0.02 1.70 16 Total: -1.00 -67.22 319.52 6.69 -60.53 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.98 Total: 13.91 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 3.61 Total: -20.07 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.24 Total: -53.45 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -0.17 Total: -46.28 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -67.22 6.69 -60.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132302136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.299 kcal (2) G-P(sol) polarization free energy of solvation -67.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds