Wall clock time and date at job start Mon Mar 30 2020 06:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47466 * 2 1 4 4 C 1.50701 * 109.47176 * 239.99754 * 2 1 3 5 5 H 1.07995 * 120.00385 * 240.00219 * 4 2 1 6 6 C 1.37882 * 119.99927 * 60.00062 * 4 2 1 7 7 N 1.31512 * 119.99626 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00223 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47161 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47382 * 119.99787 * 8 6 4 11 11 H 1.48496 * 109.47217 * 240.00249 * 8 6 4 12 12 O 1.45206 * 109.47200 * 119.99978 * 2 1 3 13 13 C 1.34224 * 117.00077 * 269.99945 * 12 2 1 14 14 O 1.20833 * 120.00103 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00302 * 180.02562 * 13 12 2 16 16 C 1.53002 * 109.46941 * 299.99657 * 15 13 12 17 17 C 1.52997 * 109.47493 * 179.97438 * 16 15 13 18 18 C 1.53006 * 109.46769 * 59.99990 * 17 16 15 19 19 C 1.53007 * 109.46755 * 179.97438 * 18 17 16 20 20 C 1.52992 * 109.47075 * 60.00379 * 18 17 16 21 21 C 1.52998 * 109.47286 * 299.99910 * 18 17 16 22 22 C 1.52997 * 109.46630 * 60.00179 * 21 18 17 23 23 H 1.08997 * 109.46785 * 299.99977 * 1 2 3 24 24 H 1.09002 * 109.47171 * 59.99957 * 1 2 3 25 25 H 1.09004 * 109.47223 * 180.02562 * 1 2 3 26 26 H 0.97006 * 119.99899 * 180.02562 * 7 6 4 27 27 H 1.08995 * 109.47473 * 59.99636 * 15 13 12 28 28 H 1.09003 * 109.47318 * 300.00255 * 16 15 13 29 29 H 1.09008 * 109.46908 * 59.99812 * 16 15 13 30 30 H 1.09003 * 109.47116 * 300.00464 * 17 16 15 31 31 H 1.09001 * 109.47677 * 179.97438 * 17 16 15 32 32 H 1.08995 * 109.46767 * 180.02562 * 19 18 17 33 33 H 1.08997 * 109.47195 * 299.99977 * 19 18 17 34 34 H 1.09003 * 109.47122 * 60.00480 * 19 18 17 35 35 H 1.09004 * 109.47270 * 299.99956 * 20 18 17 36 36 H 1.09005 * 109.47746 * 59.99679 * 20 18 17 37 37 H 1.09008 * 109.47387 * 179.97438 * 20 18 17 38 38 H 1.09000 * 109.46861 * 300.00418 * 21 18 17 39 39 H 1.08995 * 109.47244 * 179.97438 * 21 18 17 40 40 H 1.09005 * 109.47056 * 179.97438 * 22 21 18 41 41 H 1.09000 * 109.47303 * 60.00510 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9436 0.8301 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 3.1464 -2.2871 -3.6038 10 1 1.1660 -1.5868 -4.8160 11 1 3.1465 -0.1875 -4.8165 12 8 2.0140 -0.6845 1.1856 13 6 2.2172 0.0640 2.2811 14 8 1.9983 1.2519 2.2504 15 6 2.7194 -0.5770 3.5491 16 6 1.7244 -1.6441 4.0099 17 6 2.2344 -2.2953 5.2969 18 6 2.3794 -1.2294 6.3850 19 6 2.8889 -1.8809 7.6723 20 6 1.0194 -0.5795 6.6467 21 6 3.3745 -0.1624 5.9243 22 6 2.8643 0.4888 4.6373 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7089 1.1614 -3.4844 27 1 3.6884 -1.0400 3.3632 28 1 0.7552 -1.1811 4.1959 29 1 1.6214 -2.4036 3.2348 30 1 3.2034 -2.7584 5.1105 31 1 1.5254 -3.0552 5.6255 32 1 2.9918 -1.1216 8.4476 33 1 2.1797 -2.6408 8.0003 34 1 3.8579 -2.3442 7.4862 35 1 0.6559 -0.1156 5.7297 36 1 0.3104 -1.3397 6.9749 37 1 1.1225 0.1796 7.4222 38 1 4.3434 -0.6256 5.7379 39 1 3.4774 0.5971 6.6993 40 1 3.5730 1.2493 4.3092 41 1 1.8954 0.9519 4.8237 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132302330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:25 Heat of formation + Delta-G solvation = -128.263711 kcal Electronic energy + Delta-G solvation = -19705.860319 eV Core-core repulsion = 16777.246759 eV Total energy + Delta-G solvation = -2928.613560 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.18973 -38.69399 -35.68657 -33.42959 -33.07341 -30.79659 -29.56151 -27.42445 -26.98137 -25.29765 -22.88595 -22.56088 -20.93555 -19.34596 -18.42353 -16.94115 -16.49808 -15.60186 -15.26893 -14.87084 -14.75178 -14.40317 -14.04576 -13.28797 -13.20855 -13.02264 -12.46308 -12.32583 -12.05669 -11.96439 -11.84627 -11.70700 -11.41344 -11.18774 -11.07401 -10.98528 -10.93961 -10.79155 -10.41979 -10.32319 -10.26688 -10.17121 -9.93906 -9.50260 -9.37925 -8.86608 -8.47713 -6.16868 -4.23494 3.07534 3.24333 3.30961 3.35992 3.73464 4.34770 4.57116 4.65649 4.74798 5.01770 5.10636 5.16191 5.33072 5.36504 5.46099 5.52430 5.56438 5.59640 5.65083 5.74940 5.85081 5.86076 5.97487 6.03117 6.07786 6.11308 6.20856 6.26030 6.31421 6.46603 6.56493 6.67443 6.91083 6.94910 7.22395 7.62705 7.75846 7.97727 8.17426 8.69122 8.93572 9.42101 10.90670 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.043610 B = 0.004490 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.894184 B = 6233.943358 C = 6387.050666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.213 3.787 3 H 0.045 0.955 4 C -0.519 4.519 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.282 1.282 12 O -0.356 6.356 13 C 0.454 3.546 14 O -0.524 6.524 15 C -0.080 4.080 16 C -0.112 4.112 17 C -0.105 4.105 18 C -0.069 4.069 19 C -0.140 4.140 20 C -0.147 4.147 21 C -0.106 4.106 22 C -0.105 4.105 23 H 0.015 0.985 24 H 0.098 0.902 25 H 0.036 0.964 26 H 0.265 0.735 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.601 -5.041 17.336 18.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.161 3.839 3 H 0.063 0.937 4 C -0.557 4.557 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.208 1.208 12 O -0.272 6.272 13 C 0.297 3.703 14 O -0.414 6.414 15 C -0.099 4.099 16 C -0.150 4.150 17 C -0.142 4.142 18 C -0.069 4.069 19 C -0.197 4.197 20 C -0.204 4.204 21 C -0.144 4.144 22 C -0.142 4.142 23 H 0.034 0.966 24 H 0.117 0.883 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.433 -4.580 17.124 17.893 hybrid contribution 0.195 -0.210 -0.968 1.010 sum 2.628 -4.790 16.156 17.055 Atomic orbital electron populations 1.22144 0.97642 1.00013 1.01310 1.20611 0.91355 0.93902 0.78028 0.93699 1.21077 1.32317 1.13390 0.88946 0.91303 1.24894 0.94965 0.95102 0.99078 1.69915 1.36212 1.22615 1.24009 0.86231 0.78629 0.79505 0.81844 1.19478 1.20717 1.20766 1.86479 1.75682 1.43674 1.21347 1.23424 0.74816 0.85930 0.86164 1.90582 1.48859 1.17090 1.84862 1.21011 1.01008 0.97346 0.90562 1.21540 0.98181 0.97593 0.97650 1.21596 1.01452 0.97094 0.94106 1.20585 0.95754 0.95521 0.95000 1.21857 1.00850 1.00297 0.96719 1.21993 0.96120 1.00361 1.01918 1.21602 0.98251 0.97594 0.96904 1.21451 1.02851 0.96788 0.93154 0.96616 0.88327 0.94490 0.92496 0.88198 0.91295 0.90318 0.91692 0.91683 0.92845 0.92800 0.92741 0.91723 0.92895 0.92918 0.91850 0.91744 0.91222 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.33 37.16 0.35 -3.62 16 2 C 0.21 5.86 2.56 -27.88 -0.07 5.79 16 3 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 4 C -0.52 -14.81 8.90 -34.44 -0.31 -15.11 16 5 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.60 11.32 55.43 0.63 -24.97 16 8 Si 0.91 21.27 29.54 -169.99 -5.02 16.24 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 12 O -0.36 -8.62 9.77 -39.24 -0.38 -9.00 16 13 C 0.45 9.65 7.23 36.00 0.26 9.91 16 14 O -0.52 -12.61 15.20 -18.76 -0.29 -12.89 16 15 C -0.08 -1.22 2.63 -91.77 -0.24 -1.47 16 16 C -0.11 -1.50 4.86 -26.73 -0.13 -1.63 16 17 C -0.11 -1.09 4.73 -26.73 -0.13 -1.22 16 18 C -0.07 -0.66 0.77 -154.51 -0.12 -0.78 16 19 C -0.14 -1.13 8.47 37.16 0.31 -0.82 16 20 C -0.15 -1.45 7.78 37.15 0.29 -1.17 16 21 C -0.11 -1.10 4.73 -26.73 -0.13 -1.23 16 22 C -0.10 -1.42 4.22 -26.73 -0.11 -1.53 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.10 2.72 6.07 -51.93 -0.32 2.40 16 25 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.07 0.95 6.43 -51.93 -0.33 0.61 16 29 H 0.08 1.12 8.11 -51.92 -0.42 0.69 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.74 4.81 -51.93 -0.25 0.49 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 41 H 0.07 1.06 6.39 -51.93 -0.33 0.72 16 LS Contribution 319.55 15.07 4.82 4.82 Total: -1.00 -30.46 319.55 -7.43 -37.89 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.06 Total: -0.84 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -0.12 Total: -11.25 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.63 Total: -24.97 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.67 Total: -21.89 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.46 -7.43 -37.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132302330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.376 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds