Wall clock time and date at job start Mon Mar 30 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47256 * 2 1 4 4 C 1.50706 * 109.47186 * 240.00023 * 2 1 3 5 5 H 1.07998 * 119.99898 * 240.00897 * 4 2 1 6 6 C 1.37873 * 119.99779 * 59.99790 * 4 2 1 7 7 N 1.31514 * 120.00301 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99947 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47130 * 90.00503 * 8 6 4 10 10 H 1.48493 * 109.47427 * 210.00543 * 8 6 4 11 11 H 1.48502 * 109.46980 * 330.00678 * 8 6 4 12 12 C 1.52993 * 109.46991 * 120.00395 * 2 1 3 13 13 O 1.45208 * 109.47084 * 299.99583 * 12 2 1 14 14 C 1.34226 * 116.99939 * 179.97438 * 13 12 2 15 15 O 1.20825 * 120.00359 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99822 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.47238 * 300.00684 * 16 14 13 18 18 C 1.52996 * 109.46947 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.47328 * 60.00057 * 18 17 16 20 20 C 1.53001 * 109.46886 * 300.00201 * 19 18 17 21 21 C 1.52996 * 109.47302 * 59.99782 * 20 19 18 22 22 H 1.08999 * 109.46928 * 300.00463 * 1 2 3 23 23 H 1.09000 * 109.46789 * 59.99739 * 1 2 3 24 24 H 1.08999 * 109.47246 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47054 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47434 * 299.99865 * 3 2 1 27 27 H 1.08999 * 109.47073 * 60.00179 * 3 2 1 28 28 H 0.97000 * 120.00023 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47385 * 179.97438 * 12 2 1 30 30 H 1.09004 * 109.47790 * 59.99428 * 12 2 1 31 31 H 1.09001 * 109.46953 * 60.00296 * 16 14 13 32 32 H 1.09001 * 109.46832 * 299.99686 * 17 16 14 33 33 H 1.09004 * 109.47261 * 59.99705 * 17 16 14 34 34 H 1.08992 * 109.47554 * 299.99696 * 18 17 16 35 35 H 1.09000 * 109.46870 * 179.97438 * 18 17 16 36 36 H 1.08992 * 109.47399 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.47194 * 59.99524 * 19 18 17 38 38 H 1.09001 * 109.46652 * 299.99655 * 20 19 18 39 39 H 1.09004 * 109.47086 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.46870 * 180.02562 * 21 20 19 41 41 H 1.08992 * 109.47554 * 60.00308 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1615 -4.4125 10 1 2.4874 -0.1402 -5.1120 11 1 3.6309 -1.7566 -3.7120 12 6 2.0400 -0.7213 1.2491 13 8 1.5560 -0.0368 2.4348 14 6 1.9162 -0.5472 3.6228 15 8 2.6132 -1.5330 3.6706 16 6 1.4522 0.1100 4.8972 17 6 1.9640 1.5511 4.9435 18 6 1.4923 2.2184 6.2369 19 6 2.0383 1.4445 7.4386 20 6 1.5266 0.0034 7.3922 21 6 1.9982 -0.6640 6.0987 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9562 0.8900 28 1 0.7095 1.1618 -3.4844 29 1 3.1300 -0.7217 1.2490 30 1 1.6766 -1.7490 1.2492 31 1 0.3627 0.1101 4.9301 32 1 3.0535 1.5509 4.9106 33 1 1.5747 2.1026 4.0876 34 1 0.4029 2.2186 6.2694 35 1 1.8573 3.2449 6.2701 36 1 1.7027 1.9202 8.3600 37 1 3.1278 1.4444 7.4061 38 1 0.4371 0.0035 7.4247 39 1 1.9159 -0.5482 8.2480 40 1 1.6333 -1.6905 6.0656 41 1 3.0877 -0.6641 6.0662 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184798206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:07 Heat of formation + Delta-G solvation = -140.296051 kcal Electronic energy + Delta-G solvation = -19611.335989 eV Core-core repulsion = 16682.200668 eV Total energy + Delta-G solvation = -2929.135322 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68225 -39.19538 -38.05001 -36.61201 -33.32360 -32.20104 -31.65228 -27.68767 -27.58569 -27.15681 -24.80691 -23.48849 -21.81415 -20.72759 -20.61541 -18.66472 -17.75979 -17.49604 -17.34570 -16.64201 -15.87938 -15.16278 -15.07981 -14.99817 -14.75329 -14.47693 -13.95995 -13.50622 -13.40200 -13.27320 -13.10472 -13.07396 -12.82919 -12.63549 -12.34535 -12.28163 -12.14639 -12.05422 -11.74157 -11.69604 -11.39423 -11.35328 -11.27134 -11.01138 -10.96069 -10.74423 -10.41400 -8.05579 -6.23912 1.21441 1.42379 1.43997 1.52886 1.83878 2.44799 3.17648 3.57421 3.74192 3.76480 4.17960 4.23226 4.26122 4.27730 4.31221 4.39882 4.53961 4.57834 4.60211 4.73818 4.83860 4.95934 5.03336 5.12840 5.16242 5.19284 5.21723 5.24746 5.25875 5.32839 5.38301 5.41624 5.56304 5.60073 5.62534 5.67892 6.06408 6.16510 6.35991 6.75936 6.83472 7.44108 8.94032 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.045855 B = 0.004458 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.480141 B = 6279.029076 C = 6582.089450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.060 3.940 3 C -0.117 4.117 4 C -0.536 4.536 5 H 0.047 0.953 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.952 3.048 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.274 1.274 12 C 0.096 3.904 13 O -0.351 6.351 14 C 0.451 3.549 15 O -0.550 6.550 16 C -0.073 4.073 17 C -0.111 4.111 18 C -0.112 4.112 19 C -0.122 4.122 20 C -0.112 4.112 21 C -0.102 4.102 22 H 0.033 0.967 23 H 0.064 0.936 24 H 0.018 0.982 25 H 0.018 0.982 26 H 0.064 0.936 27 H 0.033 0.967 28 H 0.263 0.737 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.123 0.877 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 3.084 18.087 18.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.060 3.940 3 C -0.174 4.174 4 C -0.574 4.574 5 H 0.065 0.935 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.778 3.222 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.199 1.199 12 C 0.022 3.978 13 O -0.266 6.266 14 C 0.296 3.704 15 O -0.441 6.441 16 C -0.092 4.092 17 C -0.148 4.148 18 C -0.150 4.150 19 C -0.159 4.159 20 C -0.149 4.149 21 C -0.139 4.139 22 H 0.052 0.948 23 H 0.082 0.918 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.141 0.859 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.750 2.920 17.907 18.159 hybrid contribution 0.583 -0.881 -1.396 1.750 sum -0.168 2.039 16.511 16.637 Atomic orbital electron populations 1.21609 0.97011 0.98532 1.00352 1.18271 0.93689 0.93325 0.88704 1.21600 0.97634 0.97853 1.00349 1.21199 1.32438 1.12486 0.91277 0.93459 1.25499 0.94943 0.95542 1.01113 1.69934 1.36677 1.23168 1.23871 0.85650 0.78684 0.78450 0.79388 1.20239 1.20534 1.19907 1.23222 0.97313 0.95136 0.82097 1.86521 1.69217 1.55742 1.15166 1.24737 0.76700 0.82071 0.86918 1.90591 1.37411 1.27534 1.88597 1.21252 1.03676 0.97035 0.87213 1.21536 1.00812 0.92118 1.00359 1.21530 1.01676 0.99282 0.92471 1.21599 1.00670 0.95093 0.98543 1.21538 1.01726 0.96037 0.95639 1.21440 1.00774 0.98622 0.93093 0.94830 0.91763 0.96251 0.96286 0.91766 0.94817 0.92786 0.93650 0.93566 0.85892 0.92381 0.91154 0.90551 0.90453 0.89975 0.92320 0.90580 0.90388 0.92023 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.11 71.98 0.58 -5.12 16 2 C 0.06 3.02 0.58 -52.93 -0.03 2.99 16 3 C -0.12 -5.66 8.11 71.98 0.58 -5.08 16 4 C -0.54 -29.26 8.01 25.60 0.21 -29.06 16 5 H 0.05 2.60 7.74 -2.91 -0.02 2.57 16 6 C 0.03 1.57 5.15 84.65 0.44 2.00 16 7 N -0.90 -49.11 9.35 21.45 0.20 -48.90 16 8 Si 0.95 42.94 29.54 68.60 2.03 44.96 16 9 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 C 0.10 4.40 4.26 71.98 0.31 4.71 16 13 O -0.35 -14.13 8.78 -51.38 -0.45 -14.58 16 14 C 0.45 16.12 7.26 71.24 0.52 16.64 16 15 O -0.55 -22.83 15.73 21.97 0.35 -22.48 16 16 C -0.07 -1.81 2.63 -11.54 -0.03 -1.84 16 17 C -0.11 -2.42 5.14 30.59 0.16 -2.26 16 18 C -0.11 -1.71 5.92 30.59 0.18 -1.53 16 19 C -0.12 -1.64 5.92 30.59 0.18 -1.46 16 20 C -0.11 -1.65 5.92 30.59 0.18 -1.47 16 21 C -0.10 -2.22 4.50 30.59 0.14 -2.08 16 22 H 0.03 1.47 7.68 -2.39 -0.02 1.45 16 23 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 24 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 27 H 0.03 1.47 7.68 -2.39 -0.02 1.45 16 28 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 29 H 0.05 2.13 8.13 -2.39 -0.02 2.11 16 30 H 0.05 2.17 8.13 -2.38 -0.02 2.15 16 31 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.69 8.11 -2.38 -0.02 1.67 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 41 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 Total: -1.00 -60.63 321.77 6.50 -54.13 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.97 Total: 10.44 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 3.41 Total: -23.56 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.20 Total: -48.90 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.11 Total: -37.07 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -60.63 6.50 -54.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184798206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.168 kcal (2) G-P(sol) polarization free energy of solvation -60.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds