Wall clock time and date at job start Mon Mar 30 2020 06:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46824 * 2 1 4 4 H 1.09004 * 109.47085 * 304.99537 * 3 2 1 5 5 C 1.50700 * 109.47049 * 185.00243 * 3 2 1 6 6 H 1.08000 * 119.99669 * 239.99898 * 5 3 2 7 7 C 1.37875 * 120.00133 * 59.99727 * 5 3 2 8 8 N 1.31512 * 120.00041 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00135 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47449 * 89.99683 * 9 7 5 11 11 H 1.48504 * 109.47153 * 210.00129 * 9 7 5 12 12 H 1.48502 * 109.46642 * 329.99548 * 9 7 5 13 13 O 1.45201 * 109.47254 * 65.00050 * 3 2 1 14 14 C 1.34226 * 116.99762 * 269.99596 * 13 3 2 15 15 O 1.20825 * 120.00130 * 0.02562 * 14 13 3 16 16 C 1.50705 * 120.00035 * 179.97438 * 14 13 3 17 17 H 1.09005 * 115.54326 * 337.02099 * 16 14 13 18 18 C 1.52995 * 117.49792 * 122.72711 * 16 14 13 19 19 C 1.52994 * 60.00096 * 107.49361 * 18 16 14 20 20 C 1.52998 * 117.52155 * 107.47972 * 19 18 16 21 21 C 1.53001 * 117.49970 * 252.51292 * 19 18 16 22 22 C 1.53000 * 109.47262 * 136.05249 * 21 19 18 23 23 C 1.53002 * 109.47066 * 256.05347 * 21 19 18 24 24 H 1.09000 * 109.47352 * 60.00682 * 1 2 3 25 25 H 1.09007 * 109.47019 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47361 * 299.99655 * 1 2 3 27 27 H 1.09004 * 109.47000 * 239.99860 * 2 1 3 28 28 H 1.09001 * 109.47136 * 120.00070 * 2 1 3 29 29 H 0.97000 * 120.00129 * 179.97438 * 8 7 5 30 30 H 1.09004 * 117.50204 * 214.98329 * 18 16 14 31 31 H 1.09005 * 117.49809 * 0.02562 * 18 16 14 32 32 H 1.09010 * 109.46856 * 351.37115 * 20 19 18 33 33 H 1.09002 * 109.47281 * 111.37290 * 20 19 18 34 34 H 1.09000 * 109.47350 * 231.37754 * 20 19 18 35 35 H 1.09000 * 109.47161 * 16.05067 * 21 19 18 36 36 H 1.08998 * 109.46753 * 307.90084 * 22 21 19 37 37 H 1.08993 * 109.47425 * 67.90634 * 22 21 19 38 38 H 1.09007 * 109.47022 * 187.90744 * 22 21 19 39 39 H 1.08993 * 109.47232 * 52.25703 * 23 21 19 40 40 H 1.09001 * 109.47384 * 172.26546 * 23 21 19 41 41 H 1.09007 * 109.46636 * 292.26217 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1733 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3518 -0.7598 11 1 6.3835 0.9215 -2.8166 12 1 6.5574 2.0722 -0.6891 13 8 1.6558 2.0917 1.2407 14 6 0.4727 2.7254 1.2559 15 8 -0.2192 2.7370 0.2655 16 6 0.0068 3.4217 2.5087 17 1 0.4498 3.0633 3.4380 18 6 -0.3168 4.9136 2.4089 19 6 -1.4477 3.8937 2.5553 20 6 -2.1693 3.8267 3.9028 21 6 -2.3181 3.6227 1.3265 22 6 -2.5428 2.1161 1.1829 23 6 -3.6668 4.3260 1.4917 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8292 -0.0603 -2.9503 30 1 -0.0867 5.5375 3.2727 31 1 -0.1932 5.3916 1.4371 32 1 -1.6420 4.4461 4.6285 33 1 -3.1899 4.1916 3.7870 34 1 -2.1900 2.7947 4.2530 35 1 -1.8173 4.0019 0.4358 36 1 -1.5821 1.6017 1.2062 37 1 -3.1649 1.7615 2.0046 38 1 -3.0414 1.9118 0.2353 39 1 -3.5019 5.3765 1.7308 40 1 -4.2329 4.2491 0.5634 41 1 -4.2266 3.8533 2.2988 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187882625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:46 Heat of formation + Delta-G solvation = -93.452383 kcal Electronic energy + Delta-G solvation = -20208.539161 eV Core-core repulsion = 17281.435133 eV Total energy + Delta-G solvation = -2927.104028 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.81816 -39.53736 -37.15510 -35.52624 -34.42514 -33.29680 -29.80916 -29.17855 -27.82616 -26.09902 -24.76523 -23.45928 -22.24224 -21.09612 -19.60886 -18.61820 -18.47034 -17.14670 -17.13245 -16.37736 -16.11449 -15.19430 -14.95757 -14.60295 -14.51927 -14.22953 -13.86311 -13.75026 -13.35297 -13.31299 -13.17545 -13.09809 -12.87521 -12.73611 -12.55811 -12.48471 -12.15066 -12.12564 -11.94444 -11.59966 -11.52345 -11.39748 -10.95514 -10.83353 -10.75437 -10.62260 -10.48912 -8.28465 -6.45346 1.34263 1.39909 1.41872 1.52957 2.06286 2.41888 2.80708 3.00979 3.59237 3.80712 3.84713 4.04100 4.19639 4.33877 4.38552 4.41743 4.49805 4.56538 4.63677 4.76180 4.82513 4.86427 4.89624 4.98969 4.99473 5.05632 5.08495 5.13071 5.20693 5.27017 5.29807 5.38851 5.45143 5.49975 5.63219 5.66602 5.72175 6.01390 6.20751 6.60700 7.10529 7.29472 8.78150 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.035227 B = 0.005611 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.647223 B = 4989.057633 C = 5372.489606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C 0.228 3.772 4 H 0.006 0.994 5 C -0.552 4.552 6 H 0.062 0.938 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.980 3.020 10 H -0.267 1.267 11 H -0.277 1.277 12 H -0.267 1.267 13 O -0.370 6.370 14 C 0.468 3.532 15 O -0.523 6.523 16 C -0.184 4.184 17 H 0.140 0.860 18 C -0.131 4.131 19 C -0.072 4.072 20 C -0.116 4.116 21 C -0.060 4.060 22 C -0.142 4.142 23 C -0.138 4.138 24 H 0.035 0.965 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.270 0.730 30 H 0.139 0.861 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.993 6.692 11.173 17.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.175 3.825 4 H 0.024 0.976 5 C -0.589 4.589 6 H 0.080 0.920 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.803 3.197 10 H -0.192 1.192 11 H -0.202 1.202 12 H -0.191 1.191 13 O -0.287 6.287 14 C 0.314 3.686 15 O -0.414 6.414 16 C -0.203 4.203 17 H 0.158 0.842 18 C -0.168 4.168 19 C -0.072 4.072 20 C -0.172 4.172 21 C -0.079 4.079 22 C -0.199 4.199 23 C -0.196 4.196 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.157 0.843 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.159 6.572 10.676 16.784 hybrid contribution 1.175 -0.405 -0.890 1.528 sum -9.985 6.167 9.786 15.281 Atomic orbital electron populations 1.21833 0.96026 1.00413 1.00535 1.21851 0.94724 0.98145 1.01979 1.20285 0.94301 0.89183 0.78715 0.97631 1.21347 0.90789 1.39941 1.06833 0.91974 1.25788 1.04211 0.93849 0.94309 1.70014 1.37406 1.37973 1.09847 0.85232 0.77771 0.79094 0.77621 1.19184 1.20172 1.19116 1.86446 1.36391 1.63323 1.42506 1.23178 0.79246 0.76225 0.89988 1.90590 1.54754 1.58922 1.37126 1.22040 1.02984 1.00019 0.95266 0.84204 1.23381 1.00445 0.88391 1.04578 1.21805 0.86774 0.99931 0.98678 1.21509 1.01156 1.02797 0.91784 1.20702 0.95815 0.95937 0.95414 1.21960 1.01291 0.96255 1.00403 1.21868 0.95242 1.00561 1.01881 0.94574 0.92490 0.93300 0.89780 0.94016 0.92056 0.84265 0.89683 0.90428 0.89568 0.91911 0.92396 0.93417 0.92175 0.94239 0.91666 0.93155 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 8.43 71.98 0.61 -5.24 16 2 C -0.13 -6.67 5.49 30.60 0.17 -6.50 16 3 C 0.23 12.75 2.25 29.85 0.07 12.82 16 4 H 0.01 0.37 7.16 -2.39 -0.02 0.35 16 5 C -0.55 -32.15 8.90 25.60 0.23 -31.93 16 6 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 7 C 0.02 1.02 5.29 84.65 0.45 1.47 16 8 N -0.91 -53.23 11.29 21.45 0.24 -52.98 16 9 Si 0.98 43.65 29.54 68.60 2.03 45.67 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 13 O -0.37 -18.45 9.81 -51.38 -0.50 -18.95 16 14 C 0.47 19.82 5.37 71.24 0.38 20.20 16 15 O -0.52 -23.74 8.95 21.97 0.20 -23.55 16 16 C -0.18 -5.58 5.92 -11.54 -0.07 -5.65 16 17 H 0.14 3.75 8.14 -2.38 -0.02 3.74 16 18 C -0.13 -3.15 9.53 30.59 0.29 -2.86 16 19 C -0.07 -1.71 1.75 -52.18 -0.09 -1.81 16 20 C -0.12 -1.89 9.63 71.98 0.69 -1.20 16 21 C -0.06 -1.65 2.10 -10.79 -0.02 -1.67 16 22 C -0.14 -4.29 8.31 71.98 0.60 -3.69 16 23 C -0.14 -2.76 8.20 71.98 0.59 -2.17 16 24 H 0.04 1.70 7.80 -2.39 -0.02 1.68 16 25 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 26 H 0.05 2.08 3.97 -2.39 -0.01 2.07 16 27 H 0.08 4.74 5.95 -2.38 -0.01 4.73 16 28 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.14 2.34 8.05 -2.38 -0.02 2.32 16 31 H 0.08 2.32 8.10 -2.38 -0.02 2.31 16 32 H 0.08 0.99 7.90 -2.38 -0.02 0.97 16 33 H 0.09 1.16 5.82 -2.39 -0.01 1.15 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.99 6.28 -2.39 -0.01 1.97 16 36 H 0.05 1.71 2.92 -2.39 -0.01 1.70 16 37 H 0.06 1.50 8.09 -2.39 -0.02 1.48 16 38 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 40 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 1.17 6.78 -2.38 -0.02 1.16 16 Total: -1.00 -65.92 313.98 6.86 -59.06 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 1.00 Total: 18.96 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 3.89 Total: -28.22 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.24 Total: -52.98 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -0.31 Total: -42.50 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -65.92 6.86 -59.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187882625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.390 kcal (2) G-P(sol) polarization free energy of solvation -65.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds