Wall clock time and date at job start Mon Mar 30 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47167 * 2 1 4 4 H 1.08996 * 109.47057 * 304.51698 * 3 2 1 5 5 C 1.50700 * 109.47076 * 184.51998 * 3 2 1 6 6 H 1.08005 * 119.99613 * 245.62893 * 5 3 2 7 7 C 1.37877 * 120.00238 * 65.62413 * 5 3 2 8 8 N 1.31515 * 119.99809 * 195.77729 * 7 5 3 9 9 Si 1.86794 * 119.99864 * 15.78033 * 7 5 3 10 10 H 1.48510 * 109.47009 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47344 * 60.00091 * 9 7 5 12 12 H 1.48500 * 109.47245 * 299.99502 * 9 7 5 13 13 O 1.45193 * 109.47096 * 64.51770 * 3 2 1 14 14 C 1.34227 * 117.00010 * 270.00058 * 13 3 2 15 15 O 1.20821 * 120.00279 * 0.02562 * 14 13 3 16 16 C 1.50707 * 120.00156 * 179.97438 * 14 13 3 17 17 C 1.53003 * 109.47125 * 179.97438 * 16 14 13 18 18 H 1.09001 * 110.43407 * 305.69621 * 17 16 14 19 19 C 1.54890 * 110.48827 * 68.24244 * 17 16 14 20 20 C 1.55021 * 102.68406 * 156.51733 * 19 17 16 21 21 C 1.54273 * 104.28052 * 322.22982 * 20 19 17 22 22 C 1.53872 * 106.59461 * 23.52332 * 21 20 19 23 23 H 1.09008 * 110.03033 * 240.71109 * 22 21 20 24 24 C 1.53003 * 110.07618 * 119.30474 * 22 21 20 25 25 H 1.09004 * 109.47100 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46816 * 299.99332 * 1 2 3 27 27 H 1.08993 * 109.47195 * 59.99808 * 1 2 3 28 28 H 1.09001 * 109.46537 * 239.99941 * 2 1 3 29 29 H 1.09002 * 109.47252 * 120.00431 * 2 1 3 30 30 H 0.96998 * 120.00387 * 354.88992 * 8 7 5 31 31 H 1.08998 * 109.47097 * 299.99729 * 16 14 13 32 32 H 1.08993 * 109.46927 * 59.99985 * 16 14 13 33 33 H 1.09001 * 110.75634 * 274.93709 * 19 17 16 34 34 H 1.09005 * 110.75242 * 38.30294 * 19 17 16 35 35 H 1.09007 * 110.52620 * 203.49058 * 20 19 17 36 36 H 1.09001 * 110.37144 * 80.90231 * 20 19 17 37 37 H 1.08995 * 110.03601 * 264.23225 * 21 20 19 38 38 H 1.08997 * 110.06645 * 142.82419 * 21 20 19 39 39 H 1.08995 * 109.46857 * 302.80640 * 24 22 21 40 40 H 1.09007 * 109.46867 * 62.80656 * 24 22 21 41 41 H 1.08996 * 109.47102 * 182.80639 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6121 1.9791 -0.8467 5 6 3.5429 1.4439 -0.1120 6 1 4.1450 1.8079 0.7074 7 6 4.1491 0.9805 -1.2603 8 7 5.4313 0.6881 -1.2549 9 14 3.1492 0.7682 -2.8238 10 1 4.0280 0.2610 -3.9083 11 1 2.5738 2.0770 -3.2250 12 1 2.0513 -0.2019 -2.5813 13 8 1.6461 2.0951 1.2357 14 6 0.4629 2.7289 1.2398 15 8 -0.2213 2.7376 0.2440 16 6 -0.0129 3.4286 2.4869 17 6 -1.3790 4.0657 2.2246 18 1 -1.3342 4.7161 1.3511 19 6 -2.4590 2.9724 2.0317 20 6 -3.7684 3.7199 2.3922 21 6 -3.3720 4.6358 3.5688 22 6 -1.8528 4.8556 3.4621 23 1 -1.3574 4.4796 4.3573 24 6 -1.5490 6.3443 3.2815 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8932 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.9665 0.8679 -0.4662 31 1 -0.0983 2.7062 3.2987 32 1 0.7018 4.2035 2.7638 33 1 -2.4802 2.6286 0.9975 34 1 -2.2909 2.1388 2.7136 35 1 -4.5390 3.0137 2.7015 36 1 -4.1117 4.3139 1.5452 37 1 -3.6140 4.1532 4.5156 38 1 -3.8936 5.5898 3.4922 39 1 -2.0682 6.7165 2.3984 40 1 -1.8872 6.8933 4.1603 41 1 -0.4751 6.4834 3.1572 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187944656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:26 Heat of formation + Delta-G solvation = -143.376585 kcal Electronic energy + Delta-G solvation = -19773.350534 eV Core-core repulsion = 16844.081630 eV Total energy + Delta-G solvation = -2929.268903 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.57386 -39.55967 -37.59164 -35.52997 -33.92496 -32.62508 -32.04358 -29.55313 -27.44377 -25.58710 -24.41983 -22.82562 -21.62882 -21.04777 -20.39294 -19.88710 -18.46045 -17.50279 -17.09150 -16.24983 -15.84981 -15.66891 -15.15275 -14.90633 -14.66077 -14.55189 -14.25184 -14.03548 -13.74381 -13.35780 -13.13601 -12.99732 -12.82522 -12.68428 -12.42147 -11.94146 -11.91979 -11.85879 -11.65258 -11.56586 -11.52247 -11.43774 -11.41144 -11.19882 -11.06012 -10.85293 -10.59180 -8.95037 -6.57435 1.36709 1.39167 1.44324 1.63544 2.06382 2.33540 2.89183 3.58279 3.68051 3.76944 3.98886 4.17196 4.23200 4.29671 4.31364 4.41234 4.45214 4.50376 4.58906 4.63903 4.71025 4.76951 4.78241 4.92183 4.99199 5.04174 5.07117 5.10844 5.14057 5.19031 5.30619 5.32757 5.38573 5.39996 5.51497 5.53633 5.60564 5.84794 6.00539 6.38835 6.98805 7.21797 8.47019 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.035289 B = 0.005198 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.260413 B = 5385.284411 C = 5705.662268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.146 4.146 3 C 0.202 3.798 4 H 0.028 0.972 5 C -0.618 4.618 6 H 0.029 0.971 7 C -0.003 4.003 8 N -0.920 5.920 9 Si 1.071 2.929 10 H -0.273 1.273 11 H -0.271 1.271 12 H -0.236 1.236 13 O -0.366 6.366 14 C 0.443 3.557 15 O -0.533 6.533 16 C -0.103 4.103 17 C -0.074 4.074 18 H 0.066 0.934 19 C -0.123 4.123 20 C -0.121 4.121 21 C -0.115 4.115 22 C -0.089 4.089 23 H 0.085 0.915 24 C -0.146 4.146 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.258 0.742 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.612 6.579 9.588 21.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.148 3.852 4 H 0.045 0.955 5 C -0.655 4.655 6 H 0.047 0.953 7 C -0.203 4.203 8 N -0.555 5.555 9 Si 0.891 3.109 10 H -0.198 1.198 11 H -0.196 1.196 12 H -0.161 1.161 13 O -0.283 6.283 14 C 0.288 3.712 15 O -0.424 6.424 16 C -0.140 4.140 17 C -0.092 4.092 18 H 0.084 0.916 19 C -0.160 4.160 20 C -0.158 4.158 21 C -0.153 4.153 22 C -0.107 4.107 23 H 0.103 0.897 24 C -0.203 4.203 25 H 0.089 0.911 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.671 6.028 7.739 21.091 hybrid contribution 0.835 0.554 1.430 1.746 sum -17.836 6.581 9.168 21.107 Atomic orbital electron populations 1.21791 0.94670 1.01685 1.01325 1.22320 0.96187 0.97318 1.02509 1.20597 0.93715 0.89748 0.81150 0.95475 1.22125 0.91009 1.48790 1.03615 0.95290 1.27013 0.97528 0.91752 1.04002 1.70971 1.08211 1.42853 1.33429 0.83773 0.75452 0.79053 0.72617 1.19811 1.19611 1.16077 1.86521 1.36870 1.63230 1.41640 1.24514 0.78980 0.76157 0.91549 1.90557 1.55913 1.59168 1.36746 1.21625 0.98834 1.00858 0.92669 1.21895 0.91531 0.96913 0.98888 0.91591 1.22597 0.95025 0.97410 1.00995 1.22347 0.96697 0.98415 0.98390 1.22203 0.94479 0.99987 0.98596 1.21785 0.96528 0.95505 0.96871 0.89691 1.21901 1.01402 0.94955 1.02022 0.91112 0.93706 0.93220 0.90831 0.92420 0.93261 0.86228 0.86942 0.92949 0.91497 0.90839 0.92160 0.90714 0.90892 0.93013 0.91237 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 8.56 71.98 0.62 -4.53 16 2 C -0.15 -6.54 5.32 30.59 0.16 -6.37 16 3 C 0.20 10.33 1.84 29.85 0.05 10.38 16 4 H 0.03 1.45 5.84 -2.39 -0.01 1.43 16 5 C -0.62 -36.71 9.17 25.60 0.23 -36.48 16 6 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 7 C 0.00 -0.16 5.33 84.65 0.45 0.29 16 8 N -0.92 -57.30 13.70 21.45 0.29 -57.00 16 9 Si 1.07 50.29 26.27 68.60 1.80 52.09 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.24 -9.85 5.61 99.48 0.56 -9.29 16 13 O -0.37 -17.07 9.80 -51.38 -0.50 -17.57 16 14 C 0.44 17.01 6.20 71.24 0.44 17.45 16 15 O -0.53 -22.22 11.75 21.98 0.26 -21.96 16 16 C -0.10 -2.71 5.17 29.85 0.15 -2.55 16 17 C -0.07 -1.72 1.99 -9.72 -0.02 -1.74 16 18 H 0.07 1.79 7.67 -2.39 -0.02 1.77 16 19 C -0.12 -2.86 5.70 31.93 0.18 -2.68 16 20 C -0.12 -2.17 6.83 31.72 0.22 -1.95 16 21 C -0.12 -1.72 6.46 31.32 0.20 -1.52 16 22 C -0.09 -1.50 3.07 -10.07 -0.03 -1.53 16 23 H 0.08 1.28 7.84 -2.38 -0.02 1.26 16 24 C -0.15 -2.31 8.84 71.98 0.64 -1.67 16 25 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 26 H 0.04 1.63 6.07 -2.39 -0.01 1.62 16 27 H 0.05 1.90 7.77 -2.39 -0.02 1.89 16 28 H 0.07 3.34 4.67 -2.39 -0.01 3.33 16 29 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.26 16.24 8.73 -92.71 -0.81 15.43 16 31 H 0.12 2.66 8.06 -2.39 -0.02 2.64 16 32 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.05 1.50 7.17 -2.39 -0.02 1.48 16 34 H 0.07 1.48 8.00 -2.38 -0.02 1.46 16 35 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.97 7.67 -2.39 -0.02 0.95 16 39 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -67.74 316.64 5.95 -61.79 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.80 Total: 15.55 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 3.30 Total: -32.90 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.29 Total: -57.00 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.25 Total: -39.53 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 1.80 Total: 52.09 kcal Total: -67.74 5.95 -61.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187944656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.587 kcal (2) G-P(sol) polarization free energy of solvation -67.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds