Wall clock time and date at job start Mon Mar 30 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46910 * 2 1 4 4 H 1.08997 * 109.47624 * 304.77435 * 3 2 1 5 5 C 1.50703 * 109.46988 * 184.77191 * 3 2 1 6 6 H 1.07994 * 120.00601 * 245.45460 * 5 3 2 7 7 C 1.37884 * 119.99525 * 65.45341 * 5 3 2 8 8 N 1.31515 * 120.00196 * 9.49270 * 7 5 3 9 9 Si 1.86805 * 119.99873 * 189.48871 * 7 5 3 10 10 H 1.48502 * 109.46934 * 84.99524 * 9 7 5 11 11 H 1.48499 * 109.46736 * 204.99723 * 9 7 5 12 12 H 1.48503 * 109.46929 * 324.99736 * 9 7 5 13 13 O 1.45197 * 109.47130 * 64.77939 * 3 2 1 14 14 C 1.34235 * 116.99975 * 269.99651 * 13 3 2 15 15 O 1.20829 * 119.99559 * 0.02562 * 14 13 3 16 16 C 1.50694 * 120.00067 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.47133 * 299.99786 * 16 14 13 18 18 C 1.52995 * 109.47226 * 60.00376 * 16 14 13 19 19 C 1.53006 * 109.47171 * 180.02562 * 18 16 14 20 20 C 1.53002 * 109.46636 * 299.99610 * 19 18 16 21 21 C 1.53003 * 109.47154 * 60.00146 * 20 19 18 22 22 H 1.09001 * 109.47157 * 179.97438 * 21 20 19 23 23 C 1.53001 * 109.47133 * 59.99974 * 21 20 19 24 24 C 1.52993 * 109.47058 * 299.99555 * 21 20 19 25 25 H 1.08996 * 109.46803 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47160 * 300.00513 * 1 2 3 27 27 H 1.08999 * 109.46646 * 60.00019 * 1 2 3 28 28 H 1.08994 * 109.47682 * 240.00020 * 2 1 3 29 29 H 1.09005 * 109.46938 * 119.99657 * 2 1 3 30 30 H 0.96993 * 120.00379 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47546 * 59.99663 * 18 16 14 32 32 H 1.09004 * 109.46671 * 299.99274 * 18 16 14 33 33 H 1.08998 * 109.47404 * 179.97438 * 19 18 16 34 34 H 1.09000 * 109.47270 * 59.99360 * 19 18 16 35 35 H 1.09000 * 109.47087 * 299.99862 * 20 19 18 36 36 H 1.09005 * 109.46757 * 179.97438 * 20 19 18 37 37 H 1.09000 * 109.46915 * 60.00247 * 23 21 20 38 38 H 1.08998 * 109.46928 * 180.02562 * 23 21 20 39 39 H 1.09001 * 109.47011 * 299.99981 * 23 21 20 40 40 H 1.08998 * 109.47232 * 180.02562 * 24 21 20 41 41 H 1.09000 * 109.47303 * 300.00357 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6085 1.9805 -0.8441 5 6 3.5424 1.4442 -0.1182 6 1 4.1479 1.8096 0.6980 7 6 4.1439 0.9792 -1.2685 8 7 3.4146 0.7102 -2.3294 9 14 5.9947 0.7313 -1.3201 10 1 6.3301 -0.6080 -0.7731 11 1 6.4676 0.8251 -2.7246 12 1 6.6574 1.7797 -0.5035 13 8 1.6514 2.0933 1.2384 14 6 0.4681 2.7271 1.2486 15 8 -0.2202 2.7373 0.2555 16 6 -0.0017 3.4258 2.4983 17 1 -0.0834 2.7029 3.3099 18 6 1.0033 4.5133 2.8831 19 6 0.5266 5.2223 4.1524 20 6 -0.8412 5.8590 3.8977 21 6 -1.8463 4.7715 3.5129 22 1 -2.8208 5.2250 3.3319 23 6 -1.9604 3.7564 4.6519 24 6 -1.3695 4.0625 2.2437 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8935 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.8376 0.3828 -3.1384 31 1 1.0849 5.2363 2.0715 32 1 1.9776 4.0596 3.0650 33 1 1.2428 5.9968 4.4268 34 1 0.4452 4.4991 4.9638 35 1 -0.7599 6.5822 3.0863 36 1 -1.1810 6.3637 4.8021 37 1 -2.3001 4.2615 5.5561 38 1 -2.6761 2.9814 4.3775 39 1 -0.9860 3.3028 4.8333 40 1 -2.0858 3.2881 1.9692 41 1 -1.2882 4.7858 1.4322 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188010288.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:56 Heat of formation + Delta-G solvation = -145.120846 kcal Electronic energy + Delta-G solvation = -19973.824082 eV Core-core repulsion = 17044.479542 eV Total energy + Delta-G solvation = -2929.344540 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.67137 -39.64814 -37.51637 -35.46264 -33.60361 -32.96164 -31.94989 -29.33568 -27.62253 -25.73064 -24.64434 -23.16455 -22.34662 -21.15578 -19.51514 -18.93714 -18.35863 -17.43316 -17.16692 -16.47266 -15.76810 -15.41519 -15.12734 -14.89107 -14.70290 -14.36161 -14.04073 -13.60992 -13.47331 -13.45669 -13.23957 -13.08139 -12.82290 -12.66846 -12.55091 -12.48940 -12.15548 -12.00699 -11.94686 -11.80757 -11.56017 -11.41416 -11.12554 -10.95760 -10.87252 -10.78271 -10.55617 -8.31006 -6.44399 1.39324 1.41313 1.43260 1.53139 2.08189 2.42498 3.00149 3.63236 3.74356 3.78964 4.17060 4.21519 4.27021 4.32999 4.34786 4.35578 4.44888 4.45834 4.54907 4.66633 4.80376 4.83306 4.94393 5.03329 5.05130 5.12333 5.15762 5.17118 5.19196 5.27883 5.32433 5.37487 5.42726 5.46731 5.51730 5.58927 5.65043 5.90261 6.15556 6.61550 7.03933 7.27386 8.78582 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.030924 B = 0.005479 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.239448 B = 5108.807584 C = 5648.242238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.121 4.121 3 C 0.222 3.778 4 H 0.007 0.993 5 C -0.551 4.551 6 H 0.065 0.935 7 C 0.019 3.981 8 N -0.917 5.917 9 Si 0.977 3.023 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.265 1.265 13 O -0.363 6.363 14 C 0.445 3.555 15 O -0.547 6.547 16 C -0.073 4.073 17 H 0.121 0.879 18 C -0.110 4.110 19 C -0.111 4.111 20 C -0.115 4.115 21 C -0.084 4.084 22 H 0.084 0.916 23 C -0.153 4.153 24 C -0.094 4.094 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.033 0.967 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.270 0.730 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.889 6.919 14.532 17.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.159 4.159 3 C 0.168 3.832 4 H 0.025 0.975 5 C -0.589 4.589 6 H 0.084 0.916 7 C -0.181 4.181 8 N -0.554 5.554 9 Si 0.801 3.199 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.189 1.189 13 O -0.279 6.279 14 C 0.290 3.710 15 O -0.439 6.439 16 C -0.091 4.091 17 H 0.138 0.862 18 C -0.148 4.148 19 C -0.149 4.149 20 C -0.152 4.152 21 C -0.103 4.103 22 H 0.102 0.898 23 C -0.210 4.210 24 C -0.132 4.132 25 H 0.084 0.916 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.051 6.834 14.025 17.557 hybrid contribution 0.815 -0.385 -1.075 1.403 sum -7.236 6.449 12.951 16.176 Atomic orbital electron populations 1.21713 0.96025 1.00793 1.00217 1.21761 0.94765 0.97982 1.01381 1.20343 0.94566 0.89181 0.79078 0.97532 1.21287 0.90455 1.44721 1.02391 0.91645 1.25820 1.04120 0.94275 0.93855 1.70111 1.38213 1.44282 1.02820 0.85281 0.77822 0.79310 0.77536 1.19025 1.20431 1.18921 1.86462 1.36240 1.62949 1.42297 1.24590 0.79304 0.75931 0.91189 1.90575 1.56244 1.59579 1.37456 1.21225 0.97513 0.98268 0.92139 0.86170 1.21515 0.97569 0.96187 0.99490 1.21562 0.97302 1.00162 0.95830 1.21620 0.94326 0.97168 1.02119 1.21105 0.99399 0.96217 0.93561 0.89760 1.21976 1.02082 0.98840 0.98119 1.21439 0.93370 0.99579 0.98795 0.91643 0.94191 0.94741 0.91603 0.92762 0.92090 0.92940 0.91516 0.90352 0.90144 0.92406 0.89609 0.90896 0.92922 0.92216 0.92234 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.77 8.56 71.98 0.62 -5.16 16 2 C -0.12 -6.12 5.54 30.60 0.17 -5.95 16 3 C 0.22 12.36 2.12 29.85 0.06 12.42 16 4 H 0.01 0.44 7.10 -2.39 -0.02 0.42 16 5 C -0.55 -31.85 8.82 25.60 0.23 -31.63 16 6 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 7 C 0.02 1.09 5.16 84.66 0.44 1.53 16 8 N -0.92 -54.03 12.16 21.45 0.26 -53.77 16 9 Si 0.98 43.40 29.55 68.60 2.03 45.43 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 12 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 13 O -0.36 -17.83 9.71 -51.47 -0.50 -18.33 16 14 C 0.44 19.12 5.70 71.23 0.41 19.53 16 15 O -0.55 -26.68 13.13 21.95 0.29 -26.39 16 16 C -0.07 -2.19 2.35 -11.54 -0.03 -2.22 16 17 H 0.12 3.17 6.43 -2.39 -0.02 3.16 16 18 C -0.11 -2.95 5.14 30.59 0.16 -2.80 16 19 C -0.11 -2.04 5.65 30.60 0.17 -1.87 16 20 C -0.11 -1.89 5.45 30.60 0.17 -1.73 16 21 C -0.08 -1.54 3.19 -10.79 -0.03 -1.58 16 22 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 23 C -0.15 -2.42 8.50 71.98 0.61 -1.81 16 24 C -0.09 -2.50 4.02 30.59 0.12 -2.37 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.04 1.69 6.06 -2.39 -0.01 1.68 16 27 H 0.03 1.64 7.78 -2.39 -0.02 1.62 16 28 H 0.07 3.61 6.81 -2.39 -0.02 3.60 16 29 H 0.05 2.59 8.14 -2.38 -0.02 2.57 16 30 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.95 8.11 -2.38 -0.02 1.93 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.29 6.43 -2.39 -0.02 1.28 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 0.98 4.81 -2.39 -0.01 0.97 16 40 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 41 H 0.05 1.58 8.10 -2.39 -0.02 1.56 16 Total: -1.00 -66.86 315.21 6.15 -60.71 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.99 Total: 15.97 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 3.09 Total: -23.62 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.26 Total: -53.77 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -0.21 Total: -44.72 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -66.86 6.15 -60.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188010288.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.407 kcal (2) G-P(sol) polarization free energy of solvation -66.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds