Wall clock time and date at job start Mon Mar 30 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47309 * 2 1 4 4 H 1.09001 * 109.46670 * 54.99639 * 3 2 1 5 5 C 1.50695 * 109.47602 * 175.00131 * 3 2 1 6 6 H 1.07999 * 120.00478 * 120.00007 * 5 3 2 7 7 C 1.37878 * 119.99510 * 300.00010 * 5 3 2 8 8 N 1.31516 * 120.00327 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99675 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47040 * 59.99969 * 9 7 5 11 11 H 1.48503 * 109.47030 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46979 * 299.99872 * 9 7 5 13 13 O 1.45208 * 109.47168 * 295.00307 * 3 2 1 14 14 C 1.34226 * 116.99939 * 89.99214 * 13 3 2 15 15 O 1.20825 * 120.00359 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99822 * 179.97438 * 14 13 3 17 17 C 1.54242 * 108.89473 * 301.40153 * 16 14 13 18 18 C 1.50558 * 108.47849 * 159.17603 * 17 16 14 19 19 C 1.54069 * 112.41438 * 94.26701 * 18 17 16 20 20 C 1.54062 * 112.81423 * 318.27893 * 19 18 17 21 21 C 1.50476 * 112.49808 * 318.28084 * 20 19 18 22 22 C 1.45542 * 108.89651 * 178.60914 * 16 14 13 23 23 H 1.08998 * 109.47632 * 299.99547 * 1 2 3 24 24 H 1.08999 * 109.47078 * 60.00336 * 1 2 3 25 25 H 1.08997 * 109.47166 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47056 * 240.00005 * 2 1 3 27 27 H 1.09000 * 109.47098 * 120.00221 * 2 1 3 28 28 H 0.96995 * 119.99955 * 180.02562 * 8 7 5 29 29 H 1.09003 * 108.87088 * 60.00325 * 16 14 13 30 30 H 1.09000 * 109.62727 * 278.96931 * 17 16 14 31 31 H 1.09002 * 109.63018 * 39.55501 * 17 16 14 32 32 H 1.08998 * 108.92394 * 333.50924 * 18 17 16 33 33 H 1.09006 * 108.83565 * 214.95964 * 18 17 16 34 34 H 1.08995 * 108.81637 * 197.41476 * 19 18 17 35 35 H 1.09008 * 108.72451 * 79.07274 * 19 18 17 36 36 H 1.09007 * 108.87318 * 197.51066 * 20 19 18 37 37 H 1.08997 * 108.88235 * 79.05992 * 20 19 18 38 38 H 1.09005 * 109.62419 * 334.44750 * 21 20 19 39 39 H 1.08995 * 109.63266 * 213.86779 * 21 20 19 40 40 H 1.09005 * 108.89518 * 303.44506 * 22 16 14 41 41 H 1.08995 * 108.89211 * 62.03095 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3366 2.1728 9 14 6.0049 0.8801 1.3811 10 1 6.5004 2.2801 1.3808 11 1 6.3978 0.2169 2.6504 12 1 6.5966 0.1453 0.2343 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7254 -1.2560 15 8 -0.2190 2.7376 -0.2653 16 6 0.0073 3.4226 -2.5084 17 6 1.0482 4.4908 -2.9014 18 6 0.8720 4.8145 -4.3612 19 6 -0.0409 6.0350 -4.5864 20 6 -1.2728 6.0384 -3.6612 21 6 -1.8930 4.6744 -3.5233 22 6 -1.3089 3.9952 -2.2678 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8292 -0.0612 2.9498 29 1 -0.0678 2.6903 -3.3123 30 1 0.8939 5.3896 -2.3043 31 1 2.0527 4.1031 -2.7320 32 1 0.4370 3.9511 -4.8647 33 1 1.8499 5.0204 -4.7966 34 1 -0.3793 6.0346 -5.6224 35 1 0.5366 6.9419 -4.4061 36 1 -2.0164 6.7246 -4.0667 37 1 -0.9719 6.3903 -2.6745 38 1 -1.6614 4.0761 -4.4046 39 1 -2.9734 4.7724 -3.4175 40 1 -1.9856 3.2027 -1.9481 41 1 -1.2316 4.7354 -1.4715 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188012845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:58 Heat of formation + Delta-G solvation = -124.271127 kcal Electronic energy + Delta-G solvation = -19954.131120 eV Core-core repulsion = 17025.690692 eV Total energy + Delta-G solvation = -2928.440429 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.16687 -38.19571 -35.71526 -33.50194 -32.48330 -32.06482 -31.25914 -27.33625 -25.42910 -24.68080 -23.20468 -21.71665 -20.09242 -19.30354 -19.21645 -17.10464 -16.48586 -15.92568 -15.55234 -14.96038 -14.58384 -14.36422 -14.00302 -13.44033 -12.98283 -12.93049 -12.77615 -12.47276 -12.11871 -11.83746 -11.45924 -11.40481 -11.14080 -10.97962 -10.92747 -10.72088 -10.63566 -10.60192 -10.54245 -10.34109 -10.28324 -10.13295 -9.75957 -9.42589 -9.25571 -8.76942 -8.42549 -6.16204 -4.23232 3.08946 3.27037 3.30666 3.33010 3.72357 4.34283 4.65368 4.78681 4.86060 5.12759 5.15599 5.18419 5.27313 5.30175 5.42124 5.52195 5.74374 5.79114 5.92460 6.02428 6.06345 6.14499 6.17847 6.21227 6.25049 6.28787 6.32001 6.38108 6.48171 6.49410 6.55061 6.90298 7.00472 7.19955 7.31551 7.64410 7.77241 8.00089 8.19778 8.69616 8.94881 9.42046 10.90522 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.028826 B = 0.005558 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.114710 B = 5036.613163 C = 5715.446441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.046 0.954 5 C -0.521 4.521 6 H 0.067 0.933 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.355 6.355 14 C 0.451 3.549 15 O -0.520 6.520 16 C -0.075 4.075 17 C -0.110 4.110 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.110 4.110 23 H 0.052 0.948 24 H 0.031 0.969 25 H 0.032 0.968 26 H 0.041 0.959 27 H 0.108 0.892 28 H 0.266 0.734 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.246 7.739 -11.750 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.063 0.937 5 C -0.559 4.559 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.271 6.271 14 C 0.294 3.706 15 O -0.410 6.410 16 C -0.094 4.094 17 C -0.147 4.147 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.159 4.159 21 C -0.150 4.150 22 C -0.147 4.147 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.126 0.874 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.387 7.611 -11.240 15.455 hybrid contribution 0.867 -0.169 0.310 0.936 sum -6.520 7.442 -10.930 14.743 Atomic orbital electron populations 1.21852 0.98432 0.98904 1.00728 1.22012 0.92591 0.99480 1.03277 1.20631 0.94910 0.88732 0.78901 0.93669 1.21008 0.89768 1.38916 1.06169 0.91447 1.24881 0.99143 0.94798 0.95093 1.69882 1.35426 1.37846 1.09478 0.86361 0.84020 0.78459 0.77452 1.20024 1.21048 1.19954 1.86461 1.34428 1.62373 1.43849 1.23447 0.80716 0.76775 0.89661 1.90590 1.55592 1.58745 1.36042 1.19970 0.96410 0.98059 0.94998 1.21369 0.99089 0.97847 0.96427 1.21348 0.99477 0.98207 0.96374 1.21931 0.96096 0.98272 0.99136 1.21377 0.96870 0.97270 1.00355 1.21295 0.99433 0.96365 0.97952 1.20389 0.95097 1.01216 0.98022 0.92849 0.94991 0.94889 0.94050 0.87406 0.92379 0.88589 0.91197 0.89912 0.91899 0.91907 0.92501 0.92405 0.92588 0.91884 0.91571 0.91780 0.91383 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.57 37.15 0.32 -2.85 16 2 C -0.14 -3.42 5.49 -26.73 -0.15 -3.56 16 3 C 0.22 5.92 2.25 -27.88 -0.06 5.86 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.63 8.90 -34.44 -0.31 -14.94 16 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.25 11.29 55.43 0.63 -24.62 16 9 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 13 O -0.36 -8.44 9.33 -39.25 -0.37 -8.81 16 14 C 0.45 9.39 5.65 36.01 0.20 9.59 16 15 O -0.52 -12.08 12.93 -18.75 -0.24 -12.32 16 16 C -0.08 -1.14 2.13 -94.64 -0.20 -1.34 16 17 C -0.11 -1.50 4.97 -27.30 -0.14 -1.63 16 18 C -0.12 -1.25 5.32 -27.39 -0.15 -1.40 16 19 C -0.12 -1.09 5.85 -25.62 -0.15 -1.24 16 20 C -0.12 -1.17 5.31 -27.44 -0.15 -1.32 16 21 C -0.11 -1.17 5.61 -27.35 -0.15 -1.32 16 22 C -0.11 -1.49 3.84 -29.60 -0.11 -1.60 16 23 H 0.05 1.25 7.80 -51.93 -0.40 0.85 16 24 H 0.03 0.68 6.06 -51.93 -0.31 0.37 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 28 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.10 1.34 7.46 -51.93 -0.39 0.95 16 30 H 0.07 0.94 6.97 -51.93 -0.36 0.58 16 31 H 0.08 1.28 7.59 -51.93 -0.39 0.88 16 32 H 0.06 0.65 6.63 -51.93 -0.34 0.31 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.67 6.62 -51.93 -0.34 0.32 16 38 H 0.07 0.65 6.98 -51.93 -0.36 0.28 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.99 7.89 -51.93 -0.41 0.58 16 41 H 0.07 1.02 7.37 -51.93 -0.38 0.64 16 LS Contribution 311.16 15.07 4.69 4.69 Total: -1.00 -29.59 311.16 -8.34 -37.93 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.89 Total: 1.17 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -1.13 Total: -14.12 kcal Atomic # 7 Polarization: -25.25 SS G_CDS: 0.63 Total: -24.62 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.61 Total: -21.13 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.59 -8.34 -37.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188012845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.343 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds