Wall clock time and date at job start Mon Mar 30 2020 06:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 H 1.08997 * 109.46862 * 304.77746 * 3 2 1 5 5 C 1.50700 * 109.47268 * 184.77701 * 3 2 1 6 6 H 1.07996 * 119.99950 * 245.45277 * 5 3 2 7 7 C 1.37880 * 119.99811 * 65.45251 * 5 3 2 8 8 N 1.31514 * 120.00236 * 9.48800 * 7 5 3 9 9 Si 1.86800 * 119.99921 * 189.49237 * 7 5 3 10 10 H 1.48497 * 109.47388 * 84.99231 * 9 7 5 11 11 H 1.48495 * 109.47095 * 204.99678 * 9 7 5 12 12 H 1.48508 * 109.46915 * 324.99478 * 9 7 5 13 13 O 1.45197 * 109.47067 * 64.77598 * 3 2 1 14 14 C 1.34231 * 117.00203 * 270.00067 * 13 3 2 15 15 O 1.20826 * 119.99694 * 0.02562 * 14 13 3 16 16 C 1.50694 * 120.00072 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.47301 * 180.02562 * 16 14 13 18 18 H 1.08998 * 110.67211 * 54.29884 * 17 16 14 19 19 C 1.54897 * 110.75634 * 291.06527 * 17 16 14 20 20 C 1.54464 * 104.10247 * 203.89311 * 19 17 16 21 21 C 1.53881 * 106.68615 * 23.34101 * 20 19 17 22 22 H 1.08998 * 110.07347 * 240.85845 * 21 20 19 23 23 C 1.52993 * 110.03333 * 119.44261 * 21 20 19 24 24 C 1.54274 * 106.59563 * 0.15697 * 21 20 19 25 25 H 1.08999 * 109.46828 * 299.99967 * 1 2 3 26 26 H 1.09000 * 109.46713 * 60.00014 * 1 2 3 27 27 H 1.09007 * 109.46930 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47168 * 239.99449 * 2 1 3 29 29 H 1.08999 * 109.47094 * 120.00370 * 2 1 3 30 30 H 0.96998 * 120.00069 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47346 * 59.99843 * 16 14 13 32 32 H 1.09007 * 109.47569 * 299.99992 * 16 14 13 33 33 H 1.09002 * 110.48362 * 322.41637 * 19 17 16 34 34 H 1.08995 * 110.48779 * 85.06326 * 19 17 16 35 35 H 1.08996 * 109.85543 * 264.10565 * 20 19 17 36 36 H 1.08998 * 110.16355 * 142.74907 * 20 19 17 37 37 H 1.09003 * 109.47409 * 302.83148 * 23 21 20 38 38 H 1.09002 * 109.47254 * 62.83776 * 23 21 20 39 39 H 1.08999 * 109.47453 * 182.83422 * 23 21 20 40 40 H 1.08996 * 110.48515 * 217.71042 * 24 21 20 41 41 H 1.09007 * 110.59656 * 95.12540 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6085 1.9803 -0.8441 5 6 3.5424 1.4441 -0.1183 6 1 4.1480 1.8094 0.6979 7 6 4.1438 0.9791 -1.2686 8 7 3.4145 0.7101 -2.3294 9 14 5.9946 0.7311 -1.3203 10 1 6.3300 -0.6081 -0.7733 11 1 6.4675 0.8249 -2.7247 12 1 6.6574 1.7795 -0.5036 13 8 1.6514 2.0932 1.2384 14 6 0.4682 2.7270 1.2485 15 8 -0.2201 2.7373 0.2556 16 6 -0.0016 3.4258 2.4983 17 6 -1.3694 4.0621 2.2433 18 1 -2.0756 3.3200 1.8709 19 6 -1.2474 5.2483 1.2548 20 6 -2.4788 6.1269 1.5674 21 6 -2.9001 5.7997 3.0107 22 1 -3.9147 5.4017 3.0232 23 6 -2.8202 7.0576 3.8780 24 6 -1.9092 4.7368 3.5288 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8377 0.3833 -3.1388 31 1 0.7145 4.2005 2.7725 32 1 -0.0832 2.7028 3.3100 33 1 -0.3278 5.8042 1.4377 34 1 -1.2806 4.8919 0.2253 35 1 -3.2889 5.8874 0.8786 36 1 -2.2183 7.1820 1.4845 37 1 -1.8086 7.4618 3.8395 38 1 -3.5234 7.8019 3.5042 39 1 -3.0717 6.8053 4.9081 40 1 -2.4242 4.0081 4.1547 41 1 -1.0968 5.2075 4.0825 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188066064.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:34 Heat of formation + Delta-G solvation = -129.884610 kcal Electronic energy + Delta-G solvation = -19477.460015 eV Core-core repulsion = 16548.776167 eV Total energy + Delta-G solvation = -2928.683848 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.78066 -38.34133 -35.70912 -33.41637 -32.54651 -31.42153 -29.58763 -27.68320 -26.88819 -24.36447 -23.10331 -21.15071 -19.89858 -19.71679 -19.10939 -16.91946 -16.49413 -16.11836 -15.40498 -15.15047 -14.52821 -14.19570 -13.68198 -13.48150 -13.10221 -12.90246 -12.83125 -12.32741 -12.04070 -11.78793 -11.51899 -11.21061 -11.14771 -11.04856 -10.93232 -10.85507 -10.71450 -10.61350 -10.54349 -10.47886 -10.32063 -10.22652 -9.82314 -9.47905 -9.28513 -8.78734 -8.43664 -6.18270 -4.21770 3.13497 3.26257 3.31684 3.34656 3.76860 4.35520 4.58738 4.61402 4.75447 5.14541 5.16717 5.27609 5.39435 5.43997 5.54227 5.58809 5.63625 5.67864 5.78721 5.89830 5.94381 5.97967 6.08448 6.10806 6.18493 6.20240 6.27874 6.37486 6.42901 6.50421 6.56937 6.85557 6.99395 7.15590 7.26095 7.60672 7.72006 7.93543 8.18497 8.71276 8.96992 9.42466 10.90714 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.036515 B = 0.004457 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.626808 B = 6280.044265 C = 6527.290959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.219 3.781 4 H 0.053 0.947 5 C -0.525 4.525 6 H 0.068 0.932 7 C 0.065 3.935 8 N -0.885 5.885 9 Si 0.906 3.094 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.272 1.272 13 O -0.360 6.360 14 C 0.450 3.550 15 O -0.515 6.515 16 C -0.110 4.110 17 C -0.079 4.079 18 H 0.083 0.917 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.097 4.097 22 H 0.068 0.932 23 C -0.144 4.144 24 C -0.116 4.116 25 H 0.034 0.966 26 H 0.054 0.946 27 H 0.032 0.968 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.266 0.734 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.222 7.803 10.453 16.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.071 0.929 5 C -0.563 4.563 6 H 0.086 0.914 7 C -0.138 4.138 8 N -0.522 5.522 9 Si 0.733 3.267 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.197 1.197 13 O -0.276 6.276 14 C 0.293 3.707 15 O -0.405 6.405 16 C -0.148 4.148 17 C -0.097 4.097 18 H 0.102 0.898 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.116 4.116 22 H 0.087 0.913 23 C -0.201 4.201 24 C -0.153 4.153 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.373 7.717 9.932 16.303 hybrid contribution 0.931 -0.283 -0.242 1.002 sum -9.442 7.434 9.690 15.437 Atomic orbital electron populations 1.21856 0.98067 0.99015 1.01052 1.21912 0.92983 0.99534 1.02139 1.20623 0.94976 0.88466 0.79275 0.92885 1.21006 0.89698 1.43680 1.01892 0.91412 1.24893 0.99029 0.95197 0.94635 1.69990 1.35977 1.44061 1.02206 0.86378 0.84177 0.78894 0.77232 1.20261 1.21085 1.19682 1.86468 1.34600 1.62537 1.44007 1.23316 0.80684 0.76955 0.89768 1.90583 1.55685 1.58488 1.35783 1.21383 0.97692 1.00555 0.95182 1.21920 0.95056 0.97321 0.95406 0.89825 1.22474 0.97385 0.95254 1.00589 1.22260 0.98243 0.99651 0.95671 1.21725 0.99189 0.95508 0.95139 0.91326 1.21882 1.01694 0.97215 0.99312 1.22508 0.98485 0.97381 0.96938 0.94642 0.92651 0.94860 0.89378 0.93747 0.92438 0.88485 0.88630 0.92018 0.90281 0.92105 0.91994 0.92580 0.92982 0.92946 0.91759 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.56 37.16 0.32 -2.78 16 2 C -0.13 -3.15 5.54 -26.73 -0.15 -3.29 16 3 C 0.22 5.85 2.12 -27.89 -0.06 5.79 16 4 H 0.05 1.58 7.10 -51.93 -0.37 1.21 16 5 C -0.52 -14.82 8.82 -34.44 -0.30 -15.12 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C 0.07 1.81 5.16 -17.82 -0.09 1.72 16 8 N -0.89 -25.41 12.16 55.43 0.67 -24.73 16 9 Si 0.91 21.15 29.55 -169.99 -5.02 16.13 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 13 O -0.36 -8.55 9.80 -39.26 -0.38 -8.94 16 14 C 0.45 9.16 6.22 36.00 0.22 9.38 16 15 O -0.52 -11.57 11.82 -18.75 -0.22 -11.79 16 16 C -0.11 -1.61 5.31 -27.89 -0.15 -1.75 16 17 C -0.08 -1.03 2.46 -88.63 -0.22 -1.25 16 18 H 0.08 1.20 7.97 -51.93 -0.41 0.79 16 19 C -0.12 -1.62 5.69 -24.96 -0.14 -1.76 16 20 C -0.12 -1.33 6.46 -25.50 -0.16 -1.49 16 21 C -0.10 -0.95 3.50 -89.50 -0.31 -1.26 16 22 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 23 C -0.14 -1.20 8.84 37.15 0.33 -0.87 16 24 C -0.12 -1.18 5.81 -25.07 -0.15 -1.33 16 25 H 0.03 0.74 6.06 -51.93 -0.31 0.42 16 26 H 0.05 1.27 7.78 -51.93 -0.40 0.87 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 2.34 6.81 -51.93 -0.35 1.99 16 29 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.10 1.28 8.05 -51.93 -0.42 0.86 16 32 H 0.10 1.21 8.14 -51.92 -0.42 0.79 16 33 H 0.06 0.83 7.98 -51.93 -0.41 0.41 16 34 H 0.08 1.27 7.21 -51.93 -0.37 0.89 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.66 7.76 -51.93 -0.40 0.26 16 LS Contribution 322.95 15.07 4.87 4.87 Total: -1.00 -29.74 322.95 -8.17 -37.91 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.21 Total: 0.57 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -0.86 Total: -14.02 kcal Atomic # 7 Polarization: -25.41 SS G_CDS: 0.67 Total: -24.73 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.61 Total: -20.73 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.74 -8.17 -37.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188066064.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.978 kcal (2) G-P(sol) polarization free energy of solvation -29.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds