Wall clock time and date at job start Mon Mar 30 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 H 1.08997 * 109.46862 * 304.77746 * 3 2 1 5 5 C 1.50700 * 109.47268 * 184.77701 * 3 2 1 6 6 H 1.07996 * 119.99950 * 245.45277 * 5 3 2 7 7 C 1.37880 * 119.99811 * 65.45251 * 5 3 2 8 8 N 1.31514 * 120.00236 * 9.48800 * 7 5 3 9 9 Si 1.86800 * 119.99921 * 189.49237 * 7 5 3 10 10 H 1.48497 * 109.47388 * 84.99231 * 9 7 5 11 11 H 1.48495 * 109.47095 * 204.99678 * 9 7 5 12 12 H 1.48508 * 109.46915 * 324.99478 * 9 7 5 13 13 O 1.45197 * 109.47067 * 64.77598 * 3 2 1 14 14 C 1.34231 * 117.00203 * 270.00067 * 13 3 2 15 15 O 1.20826 * 119.99694 * 0.02562 * 14 13 3 16 16 C 1.50694 * 120.00072 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.47301 * 180.02562 * 16 14 13 18 18 H 1.08998 * 110.67211 * 54.29884 * 17 16 14 19 19 C 1.54897 * 110.75634 * 291.06527 * 17 16 14 20 20 C 1.54464 * 104.10247 * 203.89311 * 19 17 16 21 21 C 1.53881 * 106.68615 * 23.34101 * 20 19 17 22 22 H 1.08998 * 110.07347 * 240.85845 * 21 20 19 23 23 C 1.52993 * 110.03333 * 119.44261 * 21 20 19 24 24 C 1.54274 * 106.59563 * 0.15697 * 21 20 19 25 25 H 1.08999 * 109.46828 * 299.99967 * 1 2 3 26 26 H 1.09000 * 109.46713 * 60.00014 * 1 2 3 27 27 H 1.09007 * 109.46930 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47168 * 239.99449 * 2 1 3 29 29 H 1.08999 * 109.47094 * 120.00370 * 2 1 3 30 30 H 0.96998 * 120.00069 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47346 * 59.99843 * 16 14 13 32 32 H 1.09007 * 109.47569 * 299.99992 * 16 14 13 33 33 H 1.09002 * 110.48362 * 322.41637 * 19 17 16 34 34 H 1.08995 * 110.48779 * 85.06326 * 19 17 16 35 35 H 1.08996 * 109.85543 * 264.10565 * 20 19 17 36 36 H 1.08998 * 110.16355 * 142.74907 * 20 19 17 37 37 H 1.09003 * 109.47409 * 302.83148 * 23 21 20 38 38 H 1.09002 * 109.47254 * 62.83776 * 23 21 20 39 39 H 1.08999 * 109.47453 * 182.83422 * 23 21 20 40 40 H 1.08996 * 110.48515 * 217.71042 * 24 21 20 41 41 H 1.09007 * 110.59656 * 95.12540 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6085 1.9803 -0.8441 5 6 3.5424 1.4441 -0.1183 6 1 4.1480 1.8094 0.6979 7 6 4.1438 0.9791 -1.2686 8 7 3.4145 0.7101 -2.3294 9 14 5.9946 0.7311 -1.3203 10 1 6.3300 -0.6081 -0.7733 11 1 6.4675 0.8249 -2.7247 12 1 6.6574 1.7795 -0.5036 13 8 1.6514 2.0932 1.2384 14 6 0.4682 2.7270 1.2485 15 8 -0.2201 2.7373 0.2556 16 6 -0.0016 3.4258 2.4983 17 6 -1.3694 4.0621 2.2433 18 1 -2.0756 3.3200 1.8709 19 6 -1.2474 5.2483 1.2548 20 6 -2.4788 6.1269 1.5674 21 6 -2.9001 5.7997 3.0107 22 1 -3.9147 5.4017 3.0232 23 6 -2.8202 7.0576 3.8780 24 6 -1.9092 4.7368 3.5288 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8377 0.3833 -3.1388 31 1 0.7145 4.2005 2.7725 32 1 -0.0832 2.7028 3.3100 33 1 -0.3278 5.8042 1.4377 34 1 -1.2806 4.8919 0.2253 35 1 -3.2889 5.8874 0.8786 36 1 -2.2183 7.1820 1.4845 37 1 -1.8086 7.4618 3.8395 38 1 -3.5234 7.8019 3.5042 39 1 -3.0717 6.8053 4.9081 40 1 -2.4242 4.0081 4.1547 41 1 -1.0968 5.2075 4.0825 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188066064.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:33 Heat of formation + Delta-G solvation = -144.713230 kcal Electronic energy + Delta-G solvation = -19478.103032 eV Core-core repulsion = 16548.776167 eV Total energy + Delta-G solvation = -2929.326865 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.41509 -39.44436 -37.49543 -35.42664 -33.73672 -33.29226 -30.57738 -29.39933 -28.20085 -25.53379 -24.89994 -22.77746 -21.46217 -20.76894 -20.37891 -18.80502 -18.35372 -17.39844 -17.12107 -16.67188 -16.18174 -15.33629 -14.91086 -14.80239 -14.76783 -14.28795 -13.78795 -13.69895 -13.46912 -13.30608 -13.18061 -12.96402 -12.82945 -12.77875 -12.53219 -12.15434 -11.98140 -11.81896 -11.74984 -11.62006 -11.47750 -11.42001 -11.39017 -11.25662 -11.02082 -10.78139 -10.54683 -8.30394 -6.43698 1.40541 1.43031 1.49653 1.53613 2.13176 2.44599 3.00735 3.62902 3.66892 3.83631 4.07683 4.25075 4.33997 4.36192 4.38947 4.49250 4.50798 4.60442 4.68388 4.73937 4.76091 4.81901 4.85271 4.91101 5.04857 5.07364 5.11006 5.19993 5.20543 5.25000 5.35503 5.39038 5.45238 5.51531 5.53095 5.60808 5.63804 5.92940 6.20305 6.62980 7.09139 7.29240 8.78982 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.036515 B = 0.004457 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.626808 B = 6280.044265 C = 6527.290959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.121 4.121 3 C 0.223 3.777 4 H 0.009 0.991 5 C -0.553 4.553 6 H 0.065 0.935 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.977 3.023 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.265 1.265 13 O -0.370 6.370 14 C 0.440 3.560 15 O -0.541 6.541 16 C -0.100 4.100 17 C -0.078 4.078 18 H 0.067 0.933 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.095 4.095 22 H 0.074 0.926 23 C -0.141 4.141 24 C -0.106 4.106 25 H 0.041 0.959 26 H 0.033 0.967 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.270 0.730 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.061 0.939 34 H 0.042 0.958 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.203 8.147 12.678 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.159 4.159 3 C 0.170 3.830 4 H 0.026 0.974 5 C -0.591 4.591 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.554 5.554 9 Si 0.800 3.200 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.189 1.189 13 O -0.287 6.287 14 C 0.285 3.715 15 O -0.432 6.432 16 C -0.137 4.137 17 C -0.097 4.097 18 H 0.086 0.914 19 C -0.162 4.162 20 C -0.155 4.155 21 C -0.114 4.114 22 H 0.093 0.907 23 C -0.198 4.198 24 C -0.144 4.144 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.134 0.866 32 H 0.142 0.858 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.375 8.071 12.173 17.915 hybrid contribution 0.863 -0.340 -0.976 1.346 sum -9.512 7.731 11.197 16.602 Atomic orbital electron populations 1.21706 0.95924 1.00707 1.00314 1.21758 0.94840 0.98023 1.01283 1.20302 0.94411 0.89172 0.79161 0.97352 1.21318 0.90658 1.44713 1.02381 0.91682 1.25817 1.04105 0.94299 0.93891 1.70112 1.38165 1.44296 1.02784 0.85284 0.77872 0.79291 0.77518 1.19061 1.20450 1.18930 1.86461 1.36625 1.63243 1.42343 1.24561 0.79255 0.76180 0.91491 1.90581 1.56027 1.59195 1.37394 1.21565 0.98571 1.01063 0.92535 1.21922 0.93936 0.96728 0.97068 0.91408 1.22456 0.98774 0.96179 0.98766 1.22245 0.96807 0.99564 0.96881 1.21727 0.99304 0.96208 0.94121 0.90739 1.21857 1.01889 0.96452 0.99617 1.22484 0.98967 0.97567 0.95342 0.93960 0.94746 0.91838 0.91739 0.92849 0.92120 0.86578 0.85848 0.92072 0.93934 0.92506 0.91094 0.92659 0.92422 0.91769 0.90173 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.56 71.98 0.62 -5.04 16 2 C -0.12 -6.08 5.54 30.59 0.17 -5.91 16 3 C 0.22 12.32 2.12 29.85 0.06 12.38 16 4 H 0.01 0.54 7.10 -2.39 -0.02 0.53 16 5 C -0.55 -31.92 8.82 25.60 0.23 -31.70 16 6 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 7 C 0.02 1.07 5.16 84.66 0.44 1.50 16 8 N -0.92 -53.87 12.16 21.45 0.26 -53.61 16 9 Si 0.98 43.38 29.55 68.60 2.03 45.40 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 13 O -0.37 -17.87 9.80 -51.43 -0.50 -18.38 16 14 C 0.44 18.15 6.22 71.23 0.44 18.59 16 15 O -0.54 -25.28 11.82 21.96 0.26 -25.02 16 16 C -0.10 -2.76 5.31 29.85 0.16 -2.60 16 17 C -0.08 -1.95 2.46 -9.50 -0.02 -1.97 16 18 H 0.07 1.92 7.97 -2.39 -0.02 1.90 16 19 C -0.12 -3.38 5.69 31.74 0.18 -3.20 16 20 C -0.12 -2.47 6.46 31.39 0.20 -2.26 16 21 C -0.10 -1.61 3.50 -10.07 -0.04 -1.65 16 22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 23 C -0.14 -1.91 8.84 71.98 0.64 -1.28 16 24 C -0.11 -1.85 5.81 31.67 0.18 -1.67 16 25 H 0.04 1.76 6.06 -2.39 -0.01 1.74 16 26 H 0.03 1.61 7.78 -2.39 -0.02 1.60 16 27 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 28 H 0.06 3.53 6.81 -2.38 -0.02 3.51 16 29 H 0.05 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.12 2.81 8.05 -2.39 -0.02 2.79 16 32 H 0.12 2.77 8.14 -2.38 -0.02 2.75 16 33 H 0.06 1.63 7.98 -2.39 -0.02 1.61 16 34 H 0.04 1.44 7.21 -2.39 -0.02 1.43 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.35 7.67 -2.39 -0.02 1.33 16 37 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.26 7.76 -2.38 -0.02 1.24 16 Total: -1.00 -66.52 322.95 6.28 -60.24 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.98 Total: 16.16 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: 3.26 Total: -24.79 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.26 Total: -53.61 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -0.24 Total: -43.40 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -66.52 6.28 -60.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188066064.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.474 kcal (2) G-P(sol) polarization free energy of solvation -66.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds