Wall clock time and date at job start Mon Mar 30 2020 06:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46621 * 2 1 4 4 C 1.50704 * 109.46837 * 119.99401 * 2 1 3 5 5 O 1.20825 * 120.00011 * 120.00548 * 4 2 1 6 6 O 1.34234 * 119.99919 * 300.00383 * 4 2 1 7 7 C 1.45206 * 116.99548 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.46524 * 179.97438 * 7 6 4 9 9 C 1.53000 * 109.47238 * 299.99699 * 8 7 6 10 10 C 1.53000 * 109.47307 * 59.99971 * 8 7 6 11 11 C 1.53001 * 109.46866 * 180.02562 * 8 7 6 12 12 C 1.50702 * 109.47203 * 179.97438 * 11 8 7 13 13 H 1.07998 * 120.00018 * 359.97438 * 12 11 8 14 14 C 1.37881 * 120.00006 * 179.97438 * 12 11 8 15 15 N 1.31515 * 119.99576 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00050 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47282 * 60.00015 * 16 14 12 18 18 H 1.48497 * 109.47157 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47012 * 299.99864 * 16 14 12 20 20 C 1.52989 * 109.47436 * 239.99453 * 2 1 3 21 21 C 1.53000 * 117.50008 * 128.62226 * 20 2 1 22 22 C 1.52997 * 60.00347 * 252.51154 * 21 20 2 23 23 H 1.09001 * 109.47295 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47711 * 300.00528 * 1 2 3 25 25 H 1.09006 * 109.46996 * 60.00435 * 1 2 3 26 26 H 1.08994 * 109.47093 * 299.99639 * 7 6 4 27 27 H 1.08996 * 109.47252 * 60.00311 * 7 6 4 28 28 H 1.08995 * 109.47077 * 60.00126 * 9 8 7 29 29 H 1.09000 * 109.47016 * 180.02562 * 9 8 7 30 30 H 1.08998 * 109.47061 * 300.00474 * 9 8 7 31 31 H 1.09004 * 109.46827 * 60.00021 * 10 8 7 32 32 H 1.09000 * 109.47238 * 179.97438 * 10 8 7 33 33 H 1.08995 * 109.46933 * 299.99829 * 10 8 7 34 34 H 1.09008 * 109.46583 * 299.99631 * 11 8 7 35 35 H 1.08998 * 109.47302 * 59.99606 * 11 8 7 36 36 H 0.97005 * 119.99674 * 180.02562 * 15 14 12 37 37 H 1.09004 * 115.56709 * 274.30959 * 20 2 1 38 38 H 1.09002 * 117.49696 * 0.02562 * 21 20 2 39 39 H 1.09002 * 117.50343 * 145.02258 * 21 20 2 40 40 H 1.08999 * 117.49685 * 252.51237 * 22 21 20 41 41 H 1.08999 * 117.52022 * 107.47599 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7270 -1.6927 1.1199 6 8 1.7079 -0.2516 2.4497 7 6 2.2275 -0.9854 3.5898 8 6 1.7562 -0.3181 4.8835 9 6 2.2669 1.1234 4.9291 10 6 0.2270 -0.3192 4.9302 11 6 2.3043 -1.0909 6.0849 12 6 1.8407 -0.4333 7.3591 13 1 1.2178 0.4479 7.3164 14 6 2.2117 -0.9567 8.5796 15 7 2.9697 -2.0302 8.6316 16 14 1.6364 -0.1421 10.1590 17 1 0.1521 -0.1432 10.2045 18 1 2.1684 -0.8921 11.3251 19 1 2.1320 1.2572 10.2032 20 6 2.0400 -0.7213 -1.2491 21 6 3.0742 0.0050 -2.1115 22 6 1.6358 -0.1496 -2.6095 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8641 -2.0125 3.5571 27 1 3.3169 -0.9842 3.5568 28 1 1.8769 1.6742 4.0732 29 1 1.9315 1.5987 5.8509 30 1 3.3564 1.1242 4.8958 31 1 -0.1368 -1.3462 4.8977 32 1 -0.1087 0.1558 5.8520 33 1 -0.1630 0.2316 4.0743 34 1 1.9408 -2.1181 6.0526 35 1 3.3937 -1.0898 6.0514 36 1 3.2304 -2.3987 9.4902 37 1 2.1272 -1.8045 -1.1641 38 1 3.3915 0.9966 -1.7888 39 1 3.8417 -0.6002 -2.5940 40 1 1.4570 -0.8568 -3.4195 41 1 1.0062 0.7401 -2.6146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195094778.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:11 Heat of formation + Delta-G solvation = -93.808701 kcal Electronic energy + Delta-G solvation = -19186.051436 eV Core-core repulsion = 16258.931957 eV Total energy + Delta-G solvation = -2927.119479 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41961 -38.06950 -36.86668 -35.32017 -32.54366 -32.20811 -27.32675 -26.48813 -26.40088 -25.20637 -23.16768 -22.50290 -21.70033 -19.69932 -18.25549 -17.47646 -16.59308 -16.17882 -16.04349 -14.87999 -14.76626 -14.51138 -13.90889 -13.51334 -13.20900 -13.07554 -12.57113 -12.46779 -12.11098 -12.06674 -12.03609 -11.66460 -11.24407 -11.14859 -10.94957 -10.85207 -10.61255 -10.58784 -10.40242 -10.27446 -10.25004 -10.22195 -10.08817 -9.71958 -9.19547 -8.94729 -8.36171 -6.00478 -4.01730 2.42390 2.89252 3.32893 3.37830 3.39672 3.60601 4.35783 4.44674 4.61393 4.69954 4.83334 5.05132 5.17174 5.27632 5.35072 5.38767 5.52627 5.53418 5.55294 5.64622 5.73387 5.83822 5.87953 5.97266 6.06591 6.11179 6.20848 6.39379 6.52103 6.66253 6.71587 6.86865 7.11692 7.12460 7.14734 7.61206 7.73324 7.97502 8.02595 8.40109 9.02445 9.61260 11.11189 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.051568 B = 0.003882 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.843541 B = 7211.801766 C = 7414.454927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 H 0.105 0.895 4 C 0.461 3.539 5 O -0.512 6.512 6 O -0.349 6.349 7 C 0.079 3.921 8 C -0.059 4.059 9 C -0.125 4.125 10 C -0.125 4.125 11 C 0.035 3.965 12 C -0.510 4.510 13 H 0.061 0.939 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.142 4.142 21 C -0.178 4.178 22 C -0.174 4.174 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.120 5.490 -18.972 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 H 0.123 0.877 4 C 0.303 3.697 5 O -0.400 6.400 6 O -0.265 6.265 7 C 0.006 3.994 8 C -0.059 4.059 9 C -0.183 4.183 10 C -0.182 4.182 11 C -0.002 4.002 12 C -0.549 4.549 13 H 0.079 0.921 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.160 4.160 21 C -0.214 4.214 22 C -0.211 4.211 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.135 0.865 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.823 5.064 -18.822 19.862 hybrid contribution -0.011 0.130 1.019 1.027 sum -3.834 5.194 -17.803 18.937 Atomic orbital electron populations 1.21739 0.91754 1.03126 1.03246 1.20536 0.98067 0.99876 0.88712 0.87673 1.23485 0.77656 0.83016 0.85505 1.90636 1.35720 1.26130 1.87542 1.86482 1.69347 1.55891 1.14807 1.23489 0.98440 0.95069 0.82437 1.20808 0.96329 0.96565 0.92176 1.21711 0.99937 0.95640 1.00983 1.21707 0.94780 1.00772 1.00980 1.19122 0.96158 0.94895 0.90035 1.21121 1.31291 1.12130 0.90313 0.92124 1.25016 0.95269 0.95054 0.99167 1.69960 1.36344 1.21814 1.25407 0.86673 0.79028 0.79465 0.82933 1.20253 1.21388 1.20261 1.22110 1.03916 1.00245 0.89761 1.23042 0.92598 1.01970 1.03837 1.22976 0.98177 1.03243 0.96740 0.91977 0.90858 0.91239 0.91713 0.91726 0.94216 0.91588 0.93812 0.93806 0.91603 0.94198 0.96375 0.96382 0.92956 0.86493 0.88689 0.88627 0.88580 0.88561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.96 37.16 0.33 -0.98 16 2 C -0.05 -0.58 2.98 -91.78 -0.27 -0.85 16 3 H 0.11 1.01 7.90 -51.93 -0.41 0.60 16 4 C 0.46 7.10 7.26 36.01 0.26 7.36 16 5 O -0.51 -9.37 15.40 -18.75 -0.29 -9.65 16 6 O -0.35 -5.81 8.78 -39.27 -0.34 -6.16 16 7 C 0.08 1.49 4.32 37.16 0.16 1.65 16 8 C -0.06 -1.19 0.61 -154.51 -0.09 -1.29 16 9 C -0.13 -2.39 8.08 37.16 0.30 -2.09 16 10 C -0.13 -2.38 8.08 37.16 0.30 -2.08 16 11 C 0.03 0.88 4.04 -27.88 -0.11 0.77 16 12 C -0.51 -13.80 7.65 -34.44 -0.26 -14.06 16 13 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 16 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C -0.14 -1.46 4.76 -90.62 -0.43 -1.89 16 21 C -0.18 -1.57 10.18 -26.73 -0.27 -1.84 16 22 C -0.17 -1.34 9.74 -26.73 -0.26 -1.60 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 25 H 0.07 0.49 7.29 -51.93 -0.38 0.12 16 26 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 27 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 28 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 29 H 0.07 1.32 6.61 -51.93 -0.34 0.98 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 33 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 34 H 0.02 0.49 8.14 -51.92 -0.42 0.06 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 37 H 0.12 1.40 7.47 -51.93 -0.39 1.01 16 38 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.63 7.61 -51.93 -0.39 0.24 16 LS Contribution 332.70 15.07 5.01 5.01 Total: -1.00 -30.28 332.70 -7.49 -37.76 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.13 Total: -1.95 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -0.45 Total: -15.44 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.74 Total: -25.91 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.63 Total: -15.81 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.28 -7.49 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195094778.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.047 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds