Wall clock time and date at job start Mon Mar 30 2020 06:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46621 * 2 1 4 4 C 1.50704 * 109.46837 * 119.99401 * 2 1 3 5 5 O 1.20825 * 120.00011 * 120.00548 * 4 2 1 6 6 O 1.34234 * 119.99919 * 300.00383 * 4 2 1 7 7 C 1.45206 * 116.99548 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.46524 * 179.97438 * 7 6 4 9 9 C 1.53000 * 109.47238 * 299.99699 * 8 7 6 10 10 C 1.53000 * 109.47307 * 59.99971 * 8 7 6 11 11 C 1.53001 * 109.46866 * 180.02562 * 8 7 6 12 12 C 1.50702 * 109.47203 * 179.97438 * 11 8 7 13 13 H 1.07998 * 120.00018 * 359.97438 * 12 11 8 14 14 C 1.37881 * 120.00006 * 179.97438 * 12 11 8 15 15 N 1.31515 * 119.99576 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00050 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47282 * 60.00015 * 16 14 12 18 18 H 1.48497 * 109.47157 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47012 * 299.99864 * 16 14 12 20 20 C 1.52989 * 109.47436 * 239.99453 * 2 1 3 21 21 C 1.53000 * 117.50008 * 128.62226 * 20 2 1 22 22 C 1.52997 * 60.00347 * 252.51154 * 21 20 2 23 23 H 1.09001 * 109.47295 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47711 * 300.00528 * 1 2 3 25 25 H 1.09006 * 109.46996 * 60.00435 * 1 2 3 26 26 H 1.08994 * 109.47093 * 299.99639 * 7 6 4 27 27 H 1.08996 * 109.47252 * 60.00311 * 7 6 4 28 28 H 1.08995 * 109.47077 * 60.00126 * 9 8 7 29 29 H 1.09000 * 109.47016 * 180.02562 * 9 8 7 30 30 H 1.08998 * 109.47061 * 300.00474 * 9 8 7 31 31 H 1.09004 * 109.46827 * 60.00021 * 10 8 7 32 32 H 1.09000 * 109.47238 * 179.97438 * 10 8 7 33 33 H 1.08995 * 109.46933 * 299.99829 * 10 8 7 34 34 H 1.09008 * 109.46583 * 299.99631 * 11 8 7 35 35 H 1.08998 * 109.47302 * 59.99606 * 11 8 7 36 36 H 0.97005 * 119.99674 * 180.02562 * 15 14 12 37 37 H 1.09004 * 115.56709 * 274.30959 * 20 2 1 38 38 H 1.09002 * 117.49696 * 0.02562 * 21 20 2 39 39 H 1.09002 * 117.50343 * 145.02258 * 21 20 2 40 40 H 1.08999 * 117.49685 * 252.51237 * 22 21 20 41 41 H 1.08999 * 117.52022 * 107.47599 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7270 -1.6927 1.1199 6 8 1.7079 -0.2516 2.4497 7 6 2.2275 -0.9854 3.5898 8 6 1.7562 -0.3181 4.8835 9 6 2.2669 1.1234 4.9291 10 6 0.2270 -0.3192 4.9302 11 6 2.3043 -1.0909 6.0849 12 6 1.8407 -0.4333 7.3591 13 1 1.2178 0.4479 7.3164 14 6 2.2117 -0.9567 8.5796 15 7 2.9697 -2.0302 8.6316 16 14 1.6364 -0.1421 10.1590 17 1 0.1521 -0.1432 10.2045 18 1 2.1684 -0.8921 11.3251 19 1 2.1320 1.2572 10.2032 20 6 2.0400 -0.7213 -1.2491 21 6 3.0742 0.0050 -2.1115 22 6 1.6358 -0.1496 -2.6095 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8641 -2.0125 3.5571 27 1 3.3169 -0.9842 3.5568 28 1 1.8769 1.6742 4.0732 29 1 1.9315 1.5987 5.8509 30 1 3.3564 1.1242 4.8958 31 1 -0.1368 -1.3462 4.8977 32 1 -0.1087 0.1558 5.8520 33 1 -0.1630 0.2316 4.0743 34 1 1.9408 -2.1181 6.0526 35 1 3.3937 -1.0898 6.0514 36 1 3.2304 -2.3987 9.4902 37 1 2.1272 -1.8045 -1.1641 38 1 3.3915 0.9966 -1.7888 39 1 3.8417 -0.6002 -2.5940 40 1 1.4570 -0.8568 -3.4195 41 1 1.0062 0.7401 -2.6146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195094778.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:11 Heat of formation + Delta-G solvation = -108.846512 kcal Electronic energy + Delta-G solvation = -19186.703524 eV Core-core repulsion = 16258.931957 eV Total energy + Delta-G solvation = -2927.771567 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.69356 -39.18518 -38.15641 -36.83681 -34.43164 -33.23245 -29.30861 -28.00873 -27.96239 -26.16216 -25.01707 -23.16325 -22.87201 -20.66942 -19.90079 -18.71996 -18.35153 -17.71300 -17.35115 -16.52113 -15.86506 -15.63599 -15.25183 -15.02229 -14.69555 -14.29927 -14.02513 -13.83721 -13.73007 -13.13628 -13.03167 -12.89500 -12.76747 -12.64921 -12.32042 -12.29304 -12.24752 -12.02661 -11.90346 -11.82342 -11.47652 -11.37269 -11.29728 -11.00851 -10.92929 -10.87834 -10.52541 -8.16054 -6.24293 1.19108 1.42571 1.45201 1.52327 1.66290 2.44082 2.90242 3.18400 3.55242 3.62863 3.91373 3.92591 3.96808 4.09690 4.21132 4.24539 4.39956 4.45405 4.56610 4.58513 4.73453 4.79668 4.88519 4.98162 5.01602 5.03909 5.09116 5.12797 5.26111 5.30800 5.31934 5.41719 5.44831 5.47156 5.52840 5.54444 5.73657 5.86497 6.27243 6.73747 6.89502 7.43498 8.96561 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.051568 B = 0.003882 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.843541 B = 7211.801766 C = 7414.454927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 H 0.128 0.872 4 C 0.456 3.544 5 O -0.547 6.547 6 O -0.343 6.343 7 C 0.089 3.911 8 C -0.055 4.055 9 C -0.119 4.119 10 C -0.118 4.118 11 C 0.040 3.960 12 C -0.516 4.516 13 H 0.073 0.927 14 C -0.004 4.004 15 N -0.939 5.939 16 Si 0.961 3.039 17 H -0.266 1.266 18 H -0.290 1.290 19 H -0.266 1.266 20 C -0.166 4.166 21 C -0.183 4.183 22 C -0.149 4.149 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.068 0.932 34 H -0.012 1.012 35 H -0.012 1.012 36 H 0.261 0.739 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.721 7.898 -20.342 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.062 4.062 3 H 0.145 0.855 4 C 0.301 3.699 5 O -0.437 6.437 6 O -0.259 6.259 7 C 0.015 3.985 8 C -0.055 4.055 9 C -0.176 4.176 10 C -0.175 4.175 11 C 0.003 3.997 12 C -0.554 4.554 13 H 0.091 0.909 14 C -0.201 4.201 15 N -0.580 5.580 16 Si 0.786 3.214 17 H -0.190 1.190 18 H -0.215 1.215 19 H -0.191 1.191 20 C -0.184 4.184 21 C -0.220 4.220 22 C -0.185 4.185 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.117 0.883 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.006 0.994 35 H 0.006 0.994 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.123 0.877 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.440 7.492 -20.213 22.232 hybrid contribution 0.524 -0.668 1.350 1.594 sum -4.915 6.824 -18.863 20.653 Atomic orbital electron populations 1.21774 0.90120 1.03014 1.04647 1.20695 0.99220 1.00166 0.86151 0.85474 1.24582 0.76701 0.82719 0.85902 1.90628 1.37386 1.27890 1.87785 1.86475 1.69233 1.55385 1.14829 1.23090 0.97675 0.94593 0.83175 1.20629 0.97349 0.96786 0.90763 1.21640 0.99598 0.94586 1.01764 1.21636 0.93343 1.00798 1.01772 1.18983 0.94281 0.94053 0.92384 1.21517 1.30757 1.12224 0.90936 0.90903 1.25960 0.95429 0.95632 1.03058 1.70115 1.38013 1.23625 1.26211 0.85554 0.78961 0.78647 0.78234 1.19048 1.21535 1.19069 1.22017 1.06445 0.99042 0.90941 1.23156 0.93320 1.02088 1.03444 1.23093 0.97238 1.03527 0.94674 0.92883 0.90994 0.88271 0.92859 0.92872 0.91329 0.92465 0.94454 0.94445 0.92489 0.91277 0.99365 0.99380 0.93046 0.89030 0.87772 0.88822 0.87654 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.96 71.98 0.65 -1.51 16 2 C -0.04 -0.86 2.98 -11.54 -0.03 -0.89 16 3 H 0.13 1.99 7.90 -2.39 -0.02 1.97 16 4 C 0.46 13.76 7.26 71.24 0.52 14.28 16 5 O -0.55 -20.43 15.40 21.97 0.34 -20.09 16 6 O -0.34 -11.06 8.78 -51.45 -0.45 -11.51 16 7 C 0.09 3.40 4.32 71.98 0.31 3.71 16 8 C -0.06 -2.25 0.61 -52.18 -0.03 -2.28 16 9 C -0.12 -4.39 8.08 71.98 0.58 -3.81 16 10 C -0.12 -4.36 8.08 71.98 0.58 -3.78 16 11 C 0.04 2.10 4.04 29.85 0.12 2.22 16 12 C -0.52 -28.20 7.65 25.60 0.20 -28.00 16 13 H 0.07 3.73 5.68 -2.91 -0.02 3.72 16 14 C 0.00 -0.22 5.46 84.66 0.46 0.25 16 15 N -0.94 -57.39 13.29 21.45 0.28 -57.10 16 16 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 20 C -0.17 -3.16 4.76 -10.80 -0.05 -3.22 16 21 C -0.18 -2.85 10.18 30.59 0.31 -2.54 16 22 C -0.15 -1.81 9.74 30.60 0.30 -1.51 16 23 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.07 1.16 8.11 -2.39 -0.02 1.14 16 25 H 0.10 0.98 7.29 -2.38 -0.02 0.96 16 26 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 27 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 28 H 0.07 2.13 7.68 -2.39 -0.02 2.11 16 29 H 0.06 2.20 6.61 -2.39 -0.02 2.19 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 2.19 6.62 -2.39 -0.02 2.17 16 33 H 0.07 2.13 7.68 -2.39 -0.02 2.12 16 34 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 35 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 36 H 0.26 15.13 8.31 -92.70 -0.77 14.35 16 37 H 0.09 2.22 7.47 -2.38 -0.02 2.20 16 38 H 0.10 1.42 8.05 -2.39 -0.02 1.40 16 39 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.12 0.98 7.61 -2.39 -0.02 0.96 16 Total: -1.00 -66.92 332.70 7.08 -59.83 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.98 Total: 10.14 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 3.91 Total: -27.10 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.28 Total: -57.10 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.11 Total: -31.59 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -66.92 7.08 -59.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195094778.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.013 kcal (2) G-P(sol) polarization free energy of solvation -66.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds