Wall clock time and date at job start Mon Mar 30 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47803 * 2 1 4 4 C 1.53079 * 109.48374 * 120.02631 * 2 1 3 5 5 C 1.53180 * 109.16599 * 62.36983 * 4 2 1 6 6 O 1.42899 * 109.54797 * 176.84535 * 5 4 2 7 7 C 1.42904 * 114.00175 * 154.97976 * 6 5 4 8 8 C 1.52998 * 109.47088 * 184.99109 * 7 6 5 9 9 C 1.50710 * 115.55050 * 330.48080 * 8 7 6 10 10 H 1.07998 * 120.00075 * 269.04434 * 9 8 7 11 11 C 1.37876 * 119.99803 * 89.04371 * 9 8 7 12 12 N 1.31513 * 119.99687 * 184.83383 * 11 9 8 13 13 Si 1.86800 * 119.99890 * 4.82545 * 11 9 8 14 14 H 1.48501 * 109.46944 * 84.92205 * 13 11 9 15 15 H 1.48508 * 109.47023 * 204.91787 * 13 11 9 16 16 H 1.48499 * 109.47427 * 324.91711 * 13 11 9 17 17 C 1.53000 * 117.49846 * 184.81647 * 8 7 6 18 18 C 1.53002 * 60.02914 * 252.47396 * 17 8 7 19 19 C 1.53181 * 109.10597 * 56.93587 * 5 4 2 20 20 C 1.53100 * 109.15872 * 303.15395 * 19 5 4 21 21 H 1.09000 * 109.41331 * 297.49123 * 20 19 5 22 22 C 1.52994 * 109.48203 * 177.50333 * 20 19 5 23 23 O 1.42902 * 109.48560 * 57.47499 * 20 19 5 24 24 H 1.09009 * 109.46843 * 299.97303 * 1 2 3 25 25 H 1.08997 * 109.47539 * 59.96942 * 1 2 3 26 26 H 1.08996 * 109.47611 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.52650 * 302.46487 * 4 2 1 28 28 H 1.09005 * 109.52494 * 182.27774 * 4 2 1 29 29 H 1.08998 * 109.54556 * 297.02335 * 5 4 2 30 30 H 1.09002 * 109.46562 * 64.99192 * 7 6 5 31 31 H 1.08996 * 109.46815 * 304.99451 * 7 6 5 32 32 H 0.97003 * 119.99732 * 180.02562 * 12 11 9 33 33 H 1.09003 * 117.49671 * 359.97043 * 17 8 7 34 34 H 1.09001 * 117.50257 * 144.97612 * 17 8 7 35 35 H 1.08997 * 117.50300 * 107.49999 * 18 17 8 36 36 H 1.09004 * 117.49793 * 252.52538 * 18 17 8 37 37 H 1.08998 * 109.51976 * 62.97485 * 19 5 4 38 38 H 1.08998 * 109.51881 * 183.15741 * 19 5 4 39 39 H 1.08999 * 109.47716 * 299.96324 * 22 20 19 40 40 H 1.09002 * 109.47555 * 59.97176 * 22 20 19 41 41 H 1.09005 * 109.47183 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7221 1.2495 5 6 1.5758 -2.1812 1.2123 6 8 2.1092 -2.8818 2.3377 7 6 1.3419 -4.0219 2.7297 8 6 1.9309 -4.6173 4.0101 9 6 3.4146 -4.4263 4.1931 10 1 4.1045 -5.1709 3.8245 11 6 3.8912 -3.3007 4.8311 12 7 5.1866 -3.0868 4.9071 13 14 2.6968 -2.0796 5.5873 14 1 2.3302 -2.5278 6.9547 15 1 3.3368 -0.7414 5.6599 16 1 1.4742 -1.9986 4.7483 17 6 1.3165 -5.9176 4.5322 18 6 1.0560 -4.6005 5.2659 19 6 2.0746 -2.8336 -0.0808 20 6 1.5644 -2.0285 -1.2790 21 1 0.4749 -2.0550 -1.2958 22 6 2.1097 -2.6374 -2.5723 23 8 2.0065 -0.6743 -1.1664 24 1 -0.3633 0.5135 0.8903 25 1 -0.3634 0.5143 -0.8897 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6422 -0.2356 2.1398 28 1 3.1299 -0.6873 1.2708 29 1 0.4868 -2.2179 1.2426 30 1 1.3689 -4.7684 1.9359 31 1 0.3100 -3.7207 2.9103 32 1 5.5219 -2.2952 5.3563 33 1 0.4922 -6.3485 3.9638 34 1 1.9853 -6.6350 5.0078 35 1 0.0606 -4.1649 5.1803 36 1 1.5539 -4.4511 6.2241 37 1 3.1645 -2.8427 -0.0872 38 1 1.7005 -3.8556 -0.1410 39 1 3.1993 -2.6112 -2.5552 40 1 1.7724 -3.6704 -2.6581 41 1 1.7460 -2.0644 -3.4253 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227738657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:40 Heat of formation + Delta-G solvation = -72.714397 kcal Electronic energy + Delta-G solvation = -20253.253706 eV Core-core repulsion = 17327.048945 eV Total energy + Delta-G solvation = -2926.204761 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.89120 -37.60522 -35.88107 -33.33566 -32.18306 -31.91917 -29.03835 -26.67318 -26.27845 -24.99295 -22.71679 -21.91345 -21.65414 -19.33256 -18.85005 -16.53631 -16.44078 -16.08887 -15.61022 -15.04230 -14.53501 -14.24634 -14.14499 -13.69857 -13.38441 -12.89529 -12.66915 -12.51203 -12.37091 -12.05182 -11.97625 -11.83604 -11.58820 -11.14319 -11.06286 -10.92603 -10.76179 -10.41826 -10.31595 -10.04086 -9.88922 -9.49530 -9.34168 -9.05504 -8.85673 -8.45653 -8.21227 -5.94276 -3.96120 3.41684 3.49925 3.61462 3.78784 4.26923 4.62682 4.80601 4.87151 4.90584 5.03141 5.14602 5.20436 5.33475 5.36564 5.40864 5.44800 5.55302 5.60014 5.75514 5.83846 5.87785 5.90352 5.96789 6.04044 6.07857 6.09870 6.14904 6.25347 6.32588 6.40789 6.45909 6.53495 6.56444 6.69586 7.03029 7.09727 7.34252 7.80545 8.17892 8.61853 9.05838 9.71863 11.17960 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.023460 B = 0.007089 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.211842 B = 3948.632054 C = 4235.029360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.093 3.907 3 H 0.104 0.896 4 C -0.147 4.147 5 C 0.084 3.916 6 O -0.335 6.335 7 C 0.102 3.898 8 C 0.004 3.996 9 C -0.476 4.476 10 H 0.074 0.926 11 C 0.091 3.909 12 N -0.902 5.902 13 Si 0.891 3.109 14 H -0.289 1.289 15 H -0.301 1.301 16 H -0.257 1.257 17 C -0.178 4.178 18 C -0.207 4.207 19 C -0.172 4.172 20 C 0.086 3.914 21 H 0.057 0.943 22 C -0.143 4.143 23 O -0.375 6.375 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.023 0.977 32 H 0.262 0.738 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.813 3.701 -10.843 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.035 3.965 3 H 0.122 0.878 4 C -0.184 4.184 5 C 0.025 3.975 6 O -0.252 6.252 7 C 0.025 3.975 8 C 0.003 3.997 9 C -0.513 4.513 10 H 0.092 0.908 11 C -0.111 4.111 12 N -0.539 5.539 13 Si 0.721 3.279 14 H -0.216 1.216 15 H -0.228 1.228 16 H -0.181 1.181 17 C -0.215 4.215 18 C -0.244 4.244 19 C -0.210 4.210 20 C 0.028 3.972 21 H 0.074 0.926 22 C -0.200 4.200 23 O -0.295 6.295 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.376 3.962 -10.824 15.509 hybrid contribution -1.017 0.467 0.659 1.299 sum -11.393 4.429 -10.164 15.897 Atomic orbital electron populations 1.22490 0.96750 1.02722 1.02539 1.22132 0.93152 0.96377 0.84850 0.87809 1.22234 1.03447 0.94736 0.98022 1.21994 0.96224 0.92056 0.87240 1.88295 1.50122 1.41385 1.45442 1.22079 0.91470 0.87298 0.96682 1.19396 0.95494 0.95600 0.89250 1.20025 0.86788 1.06791 1.37699 0.90786 1.24824 0.94606 0.96679 0.94990 1.69909 1.12609 1.27856 1.43565 0.86698 0.82461 0.79917 0.78870 1.21599 1.22840 1.18127 1.22860 1.02337 0.91482 1.04825 1.23107 0.99917 1.02360 0.98991 1.22779 1.03640 0.99703 0.94831 1.22055 0.97626 0.82232 0.95241 0.92562 1.21751 1.02357 1.00127 0.95787 1.87947 1.73910 1.24558 1.43066 0.91411 0.91956 0.91957 0.90607 0.89765 0.93303 0.94581 0.95931 0.92881 0.91083 0.89229 0.91054 0.89361 0.89826 0.91040 0.91643 0.91220 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.11 8.65 37.16 0.32 -1.79 16 2 C 0.09 1.23 3.91 -26.69 -0.10 1.13 16 3 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 4 C -0.15 -2.41 5.29 -26.60 -0.14 -2.55 16 5 C 0.08 1.47 2.38 -26.54 -0.06 1.40 16 6 O -0.33 -7.53 7.75 -35.23 -0.27 -7.80 16 7 C 0.10 2.15 5.73 37.16 0.21 2.37 16 8 C 0.00 0.08 1.40 -155.62 -0.22 -0.13 16 9 C -0.48 -13.66 8.73 -34.44 -0.30 -13.96 16 10 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 11 C 0.09 2.69 5.29 -17.82 -0.09 2.60 16 12 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 13 Si 0.89 23.11 23.89 -169.99 -4.06 19.05 16 14 H -0.29 -7.33 6.93 56.52 0.39 -6.94 16 15 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 16 H -0.26 -6.39 6.49 56.52 0.37 -6.03 16 17 C -0.18 -3.62 9.95 -26.73 -0.27 -3.89 16 18 C -0.21 -4.50 7.32 -26.69 -0.20 -4.70 16 19 C -0.17 -2.69 4.96 -26.59 -0.13 -2.82 16 20 C 0.09 1.14 2.93 -26.68 -0.08 1.06 16 21 H 0.06 0.68 6.34 -51.93 -0.33 0.35 16 22 C -0.14 -1.60 9.56 37.15 0.36 -1.24 16 23 O -0.38 -5.47 10.24 -35.23 -0.36 -5.84 16 24 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.72 4.98 -51.93 -0.26 0.46 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 29 H 0.05 0.78 6.26 -51.93 -0.33 0.46 16 30 H 0.04 0.71 7.73 -51.93 -0.40 0.30 16 31 H 0.02 0.44 7.71 -51.93 -0.40 0.04 16 32 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 35 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 36 H 0.09 2.04 6.55 -51.93 -0.34 1.70 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.07 1.06 7.74 -51.93 -0.40 0.66 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 313.75 15.07 4.73 4.73 Total: -1.00 -31.75 313.75 -7.02 -38.77 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.13 Total: 1.10 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -0.70 Total: -22.52 kcal Atomic # 7 Polarization: -28.27 SS G_CDS: 0.77 Total: -27.50 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.63 Total: -13.63 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.06 Total: 19.05 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.75 -7.02 -38.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227738657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.941 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds