Wall clock time and date at job start Mon Mar 30 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47803 * 2 1 4 4 C 1.53079 * 109.48374 * 120.02631 * 2 1 3 5 5 C 1.53180 * 109.16599 * 62.36983 * 4 2 1 6 6 O 1.42899 * 109.54797 * 176.84535 * 5 4 2 7 7 C 1.42904 * 114.00175 * 154.97976 * 6 5 4 8 8 C 1.52998 * 109.47088 * 184.99109 * 7 6 5 9 9 C 1.50710 * 115.55050 * 330.48080 * 8 7 6 10 10 H 1.07998 * 120.00075 * 269.04434 * 9 8 7 11 11 C 1.37876 * 119.99803 * 89.04371 * 9 8 7 12 12 N 1.31513 * 119.99687 * 184.83383 * 11 9 8 13 13 Si 1.86800 * 119.99890 * 4.82545 * 11 9 8 14 14 H 1.48501 * 109.46944 * 84.92205 * 13 11 9 15 15 H 1.48508 * 109.47023 * 204.91787 * 13 11 9 16 16 H 1.48499 * 109.47427 * 324.91711 * 13 11 9 17 17 C 1.53000 * 117.49846 * 184.81647 * 8 7 6 18 18 C 1.53002 * 60.02914 * 252.47396 * 17 8 7 19 19 C 1.53181 * 109.10597 * 56.93587 * 5 4 2 20 20 C 1.53100 * 109.15872 * 303.15395 * 19 5 4 21 21 H 1.09000 * 109.41331 * 297.49123 * 20 19 5 22 22 C 1.52994 * 109.48203 * 177.50333 * 20 19 5 23 23 O 1.42902 * 109.48560 * 57.47499 * 20 19 5 24 24 H 1.09009 * 109.46843 * 299.97303 * 1 2 3 25 25 H 1.08997 * 109.47539 * 59.96942 * 1 2 3 26 26 H 1.08996 * 109.47611 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.52650 * 302.46487 * 4 2 1 28 28 H 1.09005 * 109.52494 * 182.27774 * 4 2 1 29 29 H 1.08998 * 109.54556 * 297.02335 * 5 4 2 30 30 H 1.09002 * 109.46562 * 64.99192 * 7 6 5 31 31 H 1.08996 * 109.46815 * 304.99451 * 7 6 5 32 32 H 0.97003 * 119.99732 * 180.02562 * 12 11 9 33 33 H 1.09003 * 117.49671 * 359.97043 * 17 8 7 34 34 H 1.09001 * 117.50257 * 144.97612 * 17 8 7 35 35 H 1.08997 * 117.50300 * 107.49999 * 18 17 8 36 36 H 1.09004 * 117.49793 * 252.52538 * 18 17 8 37 37 H 1.08998 * 109.51976 * 62.97485 * 19 5 4 38 38 H 1.08998 * 109.51881 * 183.15741 * 19 5 4 39 39 H 1.08999 * 109.47716 * 299.96324 * 22 20 19 40 40 H 1.09002 * 109.47555 * 59.97176 * 22 20 19 41 41 H 1.09005 * 109.47183 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7221 1.2495 5 6 1.5758 -2.1812 1.2123 6 8 2.1092 -2.8818 2.3377 7 6 1.3419 -4.0219 2.7297 8 6 1.9309 -4.6173 4.0101 9 6 3.4146 -4.4263 4.1931 10 1 4.1045 -5.1709 3.8245 11 6 3.8912 -3.3007 4.8311 12 7 5.1866 -3.0868 4.9071 13 14 2.6968 -2.0796 5.5873 14 1 2.3302 -2.5278 6.9547 15 1 3.3368 -0.7414 5.6599 16 1 1.4742 -1.9986 4.7483 17 6 1.3165 -5.9176 4.5322 18 6 1.0560 -4.6005 5.2659 19 6 2.0746 -2.8336 -0.0808 20 6 1.5644 -2.0285 -1.2790 21 1 0.4749 -2.0550 -1.2958 22 6 2.1097 -2.6374 -2.5723 23 8 2.0065 -0.6743 -1.1664 24 1 -0.3633 0.5135 0.8903 25 1 -0.3634 0.5143 -0.8897 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6422 -0.2356 2.1398 28 1 3.1299 -0.6873 1.2708 29 1 0.4868 -2.2179 1.2426 30 1 1.3689 -4.7684 1.9359 31 1 0.3100 -3.7207 2.9103 32 1 5.5219 -2.2952 5.3563 33 1 0.4922 -6.3485 3.9638 34 1 1.9853 -6.6350 5.0078 35 1 0.0606 -4.1649 5.1803 36 1 1.5539 -4.4511 6.2241 37 1 3.1645 -2.8427 -0.0872 38 1 1.7005 -3.8556 -0.1410 39 1 3.1993 -2.6112 -2.5552 40 1 1.7724 -3.6704 -2.6581 41 1 1.7460 -2.0644 -3.4253 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227738657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:39 Heat of formation + Delta-G solvation = -93.495690 kcal Electronic energy + Delta-G solvation = -20254.154851 eV Core-core repulsion = 17327.048945 eV Total energy + Delta-G solvation = -2927.105906 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.06316 -39.21742 -37.46923 -34.36405 -34.15684 -33.44853 -30.08287 -28.17673 -27.69389 -26.91157 -23.87315 -23.36006 -23.02066 -20.93916 -20.30422 -18.44991 -17.76548 -17.29442 -17.03402 -16.61587 -16.18317 -15.77337 -15.36320 -15.03010 -14.85519 -14.65750 -14.13034 -13.84300 -13.66068 -13.27991 -13.11162 -12.99885 -12.84524 -12.78241 -12.68403 -12.36637 -12.05025 -11.99317 -11.91766 -11.72930 -11.32126 -11.13307 -10.95119 -10.61786 -10.57409 -10.41394 -9.93828 -8.22398 -6.26892 1.34092 1.40079 1.55066 2.46069 2.72272 2.88400 3.15668 3.24795 3.70296 3.74438 3.88743 4.05001 4.09962 4.17834 4.26712 4.29831 4.34380 4.37989 4.46989 4.49616 4.52442 4.67843 4.77943 4.80384 4.83383 4.87034 4.95354 4.97902 5.03734 5.07404 5.15107 5.17597 5.27228 5.30981 5.39404 5.46145 5.75215 6.30273 6.31245 6.59254 6.85405 7.44620 8.94095 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.023460 B = 0.007089 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.211842 B = 3948.632054 C = 4235.029360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.094 3.906 3 H 0.117 0.883 4 C -0.148 4.148 5 C 0.076 3.924 6 O -0.377 6.377 7 C 0.105 3.895 8 C -0.035 4.035 9 C -0.473 4.473 10 H 0.024 0.976 11 C 0.035 3.965 12 N -0.956 5.956 13 Si 0.950 3.050 14 H -0.278 1.278 15 H -0.310 1.310 16 H -0.233 1.233 17 C -0.155 4.155 18 C -0.201 4.201 19 C -0.167 4.167 20 C 0.087 3.913 21 H 0.079 0.921 22 C -0.142 4.142 23 O -0.390 6.390 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.260 0.740 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.749 4.093 -11.798 19.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.037 3.963 3 H 0.135 0.865 4 C -0.186 4.186 5 C 0.018 3.982 6 O -0.296 6.296 7 C 0.029 3.971 8 C -0.036 4.036 9 C -0.510 4.510 10 H 0.042 0.958 11 C -0.162 4.162 12 N -0.596 5.596 13 Si 0.777 3.223 14 H -0.204 1.204 15 H -0.238 1.238 16 H -0.156 1.156 17 C -0.192 4.192 18 C -0.238 4.238 19 C -0.205 4.205 20 C 0.030 3.970 21 H 0.097 0.903 22 C -0.199 4.199 23 O -0.310 6.310 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.131 0.869 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.340 4.332 -11.789 19.063 hybrid contribution 0.297 0.247 0.919 0.997 sum -14.043 4.579 -10.870 18.339 Atomic orbital electron populations 1.22440 0.94391 1.03127 1.03905 1.22220 0.94938 0.96300 0.82865 0.86531 1.22280 1.01404 0.94992 0.99935 1.22268 0.97519 0.91973 0.86397 1.88243 1.51820 1.42120 1.47460 1.22042 0.92301 0.87378 0.95394 1.19427 0.92807 0.99444 0.91882 1.20230 0.89542 1.05133 1.36135 0.95756 1.25644 0.95952 0.98775 0.95815 1.70066 1.14936 1.28857 1.45781 0.85753 0.81032 0.76894 0.78662 1.20449 1.23820 1.15622 1.22922 1.02490 0.90330 1.03482 1.23138 1.00530 1.03251 0.96898 1.22736 1.01525 1.00735 0.95532 1.22178 0.98809 0.81292 0.94721 0.90298 1.21778 1.01464 1.01312 0.95317 1.87943 1.74597 1.25194 1.43290 0.90387 0.90304 0.91940 0.90667 0.93174 0.90774 0.93429 0.93022 0.93116 0.86923 0.90227 0.87768 0.91224 0.93218 0.90144 0.93087 0.89508 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.41 8.65 71.98 0.62 -2.78 16 2 C 0.09 2.33 3.91 30.62 0.12 2.45 16 3 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 4 C -0.15 -4.79 5.29 30.68 0.16 -4.63 16 5 C 0.08 2.56 2.38 30.72 0.07 2.63 16 6 O -0.38 -16.69 7.75 -148.98 -1.16 -17.85 16 7 C 0.11 4.19 5.73 71.98 0.41 4.60 16 8 C -0.03 -1.60 1.40 -52.90 -0.07 -1.67 16 9 C -0.47 -27.96 8.73 25.60 0.22 -27.73 16 10 H 0.02 1.62 8.06 -2.91 -0.02 1.59 16 11 C 0.03 2.12 5.29 84.65 0.45 2.57 16 12 N -0.96 -62.88 13.96 21.45 0.30 -62.58 16 13 Si 0.95 48.02 23.89 68.60 1.64 49.65 16 14 H -0.28 -13.42 6.93 99.48 0.69 -12.74 16 15 H -0.31 -15.96 7.11 99.48 0.71 -15.26 16 16 H -0.23 -10.79 6.49 99.48 0.65 -10.15 16 17 C -0.16 -5.87 9.95 30.60 0.30 -5.56 16 18 C -0.20 -8.11 7.32 30.62 0.22 -7.88 16 19 C -0.17 -5.11 4.96 30.69 0.15 -4.96 16 20 C 0.09 2.12 2.93 30.63 0.09 2.21 16 21 H 0.08 1.60 6.34 -2.39 -0.02 1.58 16 22 C -0.14 -2.88 9.56 71.98 0.69 -2.20 16 23 O -0.39 -10.75 10.24 -148.98 -1.53 -12.27 16 24 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.17 4.98 -2.39 -0.01 1.16 16 27 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.07 2.10 6.26 -2.39 -0.01 2.09 16 30 H 0.05 1.74 7.73 -2.39 -0.02 1.72 16 31 H 0.05 1.74 7.71 -2.39 -0.02 1.72 16 32 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 33 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.10 3.53 8.04 -2.39 -0.02 3.51 16 36 H 0.07 3.06 6.55 -2.39 -0.02 3.05 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 2.26 7.74 -2.39 -0.02 2.24 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -72.19 313.75 3.61 -68.58 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.90 Total: 17.41 kcal Atomic # 6 Polarization: -46.40 SS G_CDS: 3.45 Total: -42.95 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: 0.30 Total: -62.58 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -2.68 Total: -30.12 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 1.64 Total: 49.65 kcal Total: -72.19 3.61 -68.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227738657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.913 kcal (2) G-P(sol) polarization free energy of solvation -72.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds