Wall clock time and date at job start Mon Mar 30 2020 06:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00282 * 2 1 4 4 H 1.09002 * 109.46066 * 30.01394 * 3 2 1 5 5 C 1.52999 * 109.46480 * 270.03814 * 3 2 1 6 6 C 1.52995 * 109.47328 * 299.95747 * 5 3 2 7 7 C 1.53013 * 109.44060 * 299.95979 * 6 5 3 8 8 C 1.52990 * 109.46879 * 60.04773 * 7 6 5 9 9 C 1.52982 * 109.46774 * 149.99802 * 3 2 1 10 10 C 1.53090 * 109.41299 * 300.19477 * 9 3 2 11 11 C 1.53178 * 109.17096 * 182.41559 * 10 9 3 12 12 C 1.53199 * 109.03311 * 56.98532 * 11 10 9 13 13 C 1.53087 * 109.14883 * 303.00251 * 12 11 10 14 14 H 1.09006 * 109.47778 * 297.62070 * 13 12 11 15 15 C 1.50693 * 109.48176 * 177.59705 * 13 12 11 16 16 H 1.08001 * 120.00077 * 275.12277 * 15 13 12 17 17 C 1.37876 * 120.00145 * 95.12394 * 15 13 12 18 18 N 1.31514 * 120.00240 * 185.42895 * 17 15 13 19 19 Si 1.86803 * 119.99772 * 5.43110 * 17 15 13 20 20 H 1.48509 * 109.46902 * 84.79661 * 19 17 15 21 21 H 1.48501 * 109.47129 * 204.79264 * 19 17 15 22 22 H 1.48495 * 109.47271 * 324.79675 * 19 17 15 23 23 O 1.42886 * 109.52530 * 180.24211 * 9 3 2 24 24 H 1.09006 * 109.46829 * 59.99757 * 1 2 3 25 25 H 1.08993 * 109.47173 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46824 * 300.00199 * 1 2 3 27 27 H 1.08995 * 109.46964 * 59.95869 * 5 3 2 28 28 H 1.09000 * 109.47031 * 179.97438 * 5 3 2 29 29 H 1.09000 * 109.47824 * 59.95051 * 6 5 3 30 30 H 1.08996 * 109.47736 * 179.97438 * 6 5 3 31 31 H 1.09004 * 109.47009 * 180.02562 * 7 6 5 32 32 H 1.08998 * 109.46923 * 300.04217 * 7 6 5 33 33 H 1.09007 * 109.46306 * 180.02562 * 8 7 6 34 34 H 1.08997 * 109.46507 * 60.02874 * 8 7 6 35 35 H 1.08998 * 109.52135 * 302.32211 * 10 9 3 36 36 H 1.08996 * 109.52289 * 62.50236 * 10 9 3 37 37 H 1.09004 * 109.54329 * 176.84806 * 11 10 9 38 38 H 1.08997 * 109.54611 * 297.02571 * 11 10 9 39 39 H 1.08995 * 109.53288 * 183.09767 * 12 11 10 40 40 H 1.09005 * 109.52189 * 62.89674 * 12 11 10 41 41 H 0.97003 * 120.00192 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9992 0.5141 5 6 2.2168 1.7716 -1.4425 6 6 3.1509 0.7983 -2.1643 7 6 4.5001 0.7582 -1.4436 8 6 4.2941 0.2917 -0.0012 9 6 3.3588 1.2631 0.7212 10 6 3.1502 0.7922 2.1629 11 6 4.4944 0.8095 2.8972 12 6 5.0840 2.2217 2.8266 13 6 5.2183 2.6371 1.3593 14 1 5.9102 1.9640 0.8529 15 6 5.7425 4.0478 1.2822 16 1 5.0600 4.8820 1.3502 17 6 7.0936 4.2736 1.1250 18 7 7.5642 5.5010 1.1648 19 14 8.2556 2.8360 0.8555 20 1 8.2861 2.4881 -0.5880 21 1 9.6207 3.2123 1.3028 22 1 7.7838 1.6648 1.6370 23 8 3.9385 2.5691 0.7269 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.2558 1.8011 -1.9559 28 1 2.6598 2.7675 -1.4426 29 1 2.7087 -0.1980 -2.1635 30 1 3.2977 1.1301 -3.1921 31 1 5.1662 0.0652 -1.9577 32 1 4.9418 1.7547 -1.4437 33 1 5.2552 0.2636 0.5122 34 1 3.8529 -0.7050 -0.0014 35 1 2.4513 1.4599 2.6667 36 1 2.7494 -0.2215 2.1606 37 1 4.3440 0.5289 3.9397 38 1 5.1773 0.1037 2.4245 39 1 6.0662 2.2306 3.2990 40 1 4.4238 2.9184 3.3434 41 1 8.5148 5.6598 1.0546 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309205758.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:38 Heat of formation + Delta-G solvation = -111.924957 kcal Electronic energy + Delta-G solvation = -21057.514606 eV Core-core repulsion = 18129.609548 eV Total energy + Delta-G solvation = -2927.905059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.13053 -37.53292 -35.09282 -32.89949 -32.72259 -30.78329 -29.89655 -27.61454 -26.15048 -25.02031 -22.57208 -22.09169 -21.24128 -19.59569 -18.36736 -17.10243 -16.16446 -15.76946 -15.43082 -14.98708 -14.59166 -14.18190 -13.98751 -13.58672 -13.23424 -13.02214 -12.69551 -12.47430 -12.43846 -11.81879 -11.72248 -11.54049 -11.21718 -11.08255 -11.03688 -10.89067 -10.63705 -10.37893 -10.28871 -10.06518 -10.02517 -9.78607 -9.56943 -9.20181 -8.75514 -8.69066 -8.19688 -6.15814 -4.16029 3.23462 3.31668 3.32580 3.72541 4.33659 4.84940 4.95233 5.09014 5.17300 5.30478 5.32725 5.36699 5.48860 5.51301 5.59861 5.65697 5.70388 5.75795 5.80841 5.98145 5.99172 6.08850 6.18433 6.24425 6.30548 6.35419 6.44768 6.46781 6.51062 6.59234 6.66841 6.77281 6.84854 6.86337 6.93088 7.32128 7.37950 7.68130 8.17118 8.70997 8.96276 9.46088 10.96828 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.027460 B = 0.008024 C = 0.007395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.435818 B = 3488.484777 C = 3785.461157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.108 3.892 4 H 0.063 0.937 5 C -0.136 4.136 6 C -0.107 4.107 7 C -0.119 4.119 8 C -0.137 4.137 9 C 0.122 3.878 10 C -0.134 4.134 11 C -0.127 4.127 12 C -0.143 4.143 13 C 0.192 3.808 14 H 0.022 0.978 15 C -0.504 4.504 16 H 0.080 0.920 17 C 0.078 3.922 18 N -0.891 5.891 19 Si 0.869 3.131 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.264 1.264 23 O -0.363 6.363 24 H 0.038 0.962 25 H 0.081 0.919 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.367 -11.758 -2.408 15.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.296 6.296 3 C 0.050 3.950 4 H 0.081 0.919 5 C -0.173 4.173 6 C -0.144 4.144 7 C -0.156 4.156 8 C -0.175 4.175 9 C 0.082 3.918 10 C -0.171 4.171 11 C -0.164 4.164 12 C -0.182 4.182 13 C 0.136 3.864 14 H 0.039 0.961 15 C -0.541 4.541 16 H 0.098 0.902 17 C -0.125 4.125 18 N -0.529 5.529 19 Si 0.696 3.304 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.189 1.189 23 O -0.283 6.283 24 H 0.057 0.943 25 H 0.099 0.901 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.165 -11.635 -2.498 15.651 hybrid contribution 0.644 -0.673 0.049 0.933 sum -9.521 -12.309 -2.449 15.753 Atomic orbital electron populations 1.22732 0.81806 1.02121 0.99778 1.87851 1.18813 1.27927 1.95026 1.21822 0.93811 0.83729 0.95627 0.91936 1.21946 0.99239 1.00947 0.95205 1.21353 0.95639 0.99361 0.98088 1.21472 0.96810 1.02311 0.95050 1.22044 1.00079 0.99201 0.96177 1.21051 0.91592 0.86296 0.92887 1.22052 0.97861 1.01116 0.96106 1.21749 0.96530 0.98995 0.99167 1.22397 1.00395 0.94041 1.01331 1.20176 0.81063 0.97374 0.87773 0.96089 1.20763 0.92869 0.90446 1.50035 0.90184 1.24899 0.97794 0.95537 0.94249 1.69870 1.14189 1.19569 1.49245 0.86977 0.80450 0.83495 0.79465 1.19718 1.21163 1.18874 1.88025 1.36264 1.24825 1.79152 0.94329 0.90064 0.94284 0.92769 0.89564 0.92067 0.92707 0.92858 0.90678 0.91669 0.91351 0.92037 0.91587 0.92957 0.92600 0.92209 0.91947 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.82 101.05 1.09 1.44 16 2 O -0.38 -5.41 8.37 -35.23 -0.29 -5.70 16 3 C 0.11 1.71 2.09 -26.74 -0.06 1.66 16 4 H 0.06 0.98 7.79 -51.93 -0.40 0.58 16 5 C -0.14 -2.08 5.48 -26.73 -0.15 -2.23 16 6 C -0.11 -1.60 5.78 -26.73 -0.15 -1.75 16 7 C -0.12 -2.03 5.78 -26.73 -0.15 -2.19 16 8 C -0.14 -2.42 3.89 -26.74 -0.10 -2.53 16 9 C 0.12 2.23 0.51 -90.59 -0.05 2.19 16 10 C -0.13 -2.28 4.73 -26.59 -0.13 -2.40 16 11 C -0.13 -2.27 5.72 -26.54 -0.15 -2.42 16 12 C -0.14 -3.10 5.40 -26.58 -0.14 -3.24 16 13 C 0.19 4.64 1.98 -27.84 -0.06 4.58 16 14 H 0.02 0.52 3.47 -51.93 -0.18 0.34 16 15 C -0.50 -14.33 9.23 -34.44 -0.32 -14.65 16 16 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 17 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 18 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 19 Si 0.87 21.26 27.00 -169.99 -4.59 16.67 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.26 -6.15 6.80 56.52 0.38 -5.77 16 23 O -0.36 -8.17 8.54 -35.23 -0.30 -8.47 16 24 H 0.04 0.38 7.87 -51.93 -0.41 -0.03 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 27 H 0.05 0.72 7.87 -51.93 -0.41 0.31 16 28 H 0.09 1.50 7.69 -51.93 -0.40 1.10 16 29 H 0.06 0.87 7.68 -51.93 -0.40 0.47 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.49 7.69 -51.93 -0.40 1.09 16 33 H 0.06 1.23 4.98 -51.93 -0.26 0.97 16 34 H 0.07 1.11 7.69 -51.93 -0.40 0.72 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.03 7.75 -51.93 -0.40 0.62 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.99 6.62 -51.93 -0.34 0.64 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 304.32 15.07 4.59 4.59 Total: -1.00 -29.71 304.32 -7.24 -36.95 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.96 Total: 1.52 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -0.46 Total: -19.41 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.77 Total: -26.14 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.60 Total: -14.18 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.59 Total: 16.67 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.71 -7.24 -36.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309205758.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.973 kcal (2) G-P(sol) polarization free energy of solvation -29.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds