Wall clock time and date at job start Mon Mar 30 2020 06:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00282 * 2 1 4 4 H 1.09002 * 109.46066 * 30.01394 * 3 2 1 5 5 C 1.52999 * 109.46480 * 270.03814 * 3 2 1 6 6 C 1.52995 * 109.47328 * 299.95747 * 5 3 2 7 7 C 1.53013 * 109.44060 * 299.95979 * 6 5 3 8 8 C 1.52990 * 109.46879 * 60.04773 * 7 6 5 9 9 C 1.52982 * 109.46774 * 149.99802 * 3 2 1 10 10 C 1.53090 * 109.41299 * 300.19477 * 9 3 2 11 11 C 1.53178 * 109.17096 * 182.41559 * 10 9 3 12 12 C 1.53199 * 109.03311 * 56.98532 * 11 10 9 13 13 C 1.53087 * 109.14883 * 303.00251 * 12 11 10 14 14 H 1.09006 * 109.47778 * 297.62070 * 13 12 11 15 15 C 1.50693 * 109.48176 * 177.59705 * 13 12 11 16 16 H 1.08001 * 120.00077 * 275.12277 * 15 13 12 17 17 C 1.37876 * 120.00145 * 95.12394 * 15 13 12 18 18 N 1.31514 * 120.00240 * 185.42895 * 17 15 13 19 19 Si 1.86803 * 119.99772 * 5.43110 * 17 15 13 20 20 H 1.48509 * 109.46902 * 84.79661 * 19 17 15 21 21 H 1.48501 * 109.47129 * 204.79264 * 19 17 15 22 22 H 1.48495 * 109.47271 * 324.79675 * 19 17 15 23 23 O 1.42886 * 109.52530 * 180.24211 * 9 3 2 24 24 H 1.09006 * 109.46829 * 59.99757 * 1 2 3 25 25 H 1.08993 * 109.47173 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46824 * 300.00199 * 1 2 3 27 27 H 1.08995 * 109.46964 * 59.95869 * 5 3 2 28 28 H 1.09000 * 109.47031 * 179.97438 * 5 3 2 29 29 H 1.09000 * 109.47824 * 59.95051 * 6 5 3 30 30 H 1.08996 * 109.47736 * 179.97438 * 6 5 3 31 31 H 1.09004 * 109.47009 * 180.02562 * 7 6 5 32 32 H 1.08998 * 109.46923 * 300.04217 * 7 6 5 33 33 H 1.09007 * 109.46306 * 180.02562 * 8 7 6 34 34 H 1.08997 * 109.46507 * 60.02874 * 8 7 6 35 35 H 1.08998 * 109.52135 * 302.32211 * 10 9 3 36 36 H 1.08996 * 109.52289 * 62.50236 * 10 9 3 37 37 H 1.09004 * 109.54329 * 176.84806 * 11 10 9 38 38 H 1.08997 * 109.54611 * 297.02571 * 11 10 9 39 39 H 1.08995 * 109.53288 * 183.09767 * 12 11 10 40 40 H 1.09005 * 109.52189 * 62.89674 * 12 11 10 41 41 H 0.97003 * 120.00192 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9992 0.5141 5 6 2.2168 1.7716 -1.4425 6 6 3.1509 0.7983 -2.1643 7 6 4.5001 0.7582 -1.4436 8 6 4.2941 0.2917 -0.0012 9 6 3.3588 1.2631 0.7212 10 6 3.1502 0.7922 2.1629 11 6 4.4944 0.8095 2.8972 12 6 5.0840 2.2217 2.8266 13 6 5.2183 2.6371 1.3593 14 1 5.9102 1.9640 0.8529 15 6 5.7425 4.0478 1.2822 16 1 5.0600 4.8820 1.3502 17 6 7.0936 4.2736 1.1250 18 7 7.5642 5.5010 1.1648 19 14 8.2556 2.8360 0.8555 20 1 8.2861 2.4881 -0.5880 21 1 9.6207 3.2123 1.3028 22 1 7.7838 1.6648 1.6370 23 8 3.9385 2.5691 0.7269 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.2558 1.8011 -1.9559 28 1 2.6598 2.7675 -1.4426 29 1 2.7087 -0.1980 -2.1635 30 1 3.2977 1.1301 -3.1921 31 1 5.1662 0.0652 -1.9577 32 1 4.9418 1.7547 -1.4437 33 1 5.2552 0.2636 0.5122 34 1 3.8529 -0.7050 -0.0014 35 1 2.4513 1.4599 2.6667 36 1 2.7494 -0.2215 2.1606 37 1 4.3440 0.5289 3.9397 38 1 5.1773 0.1037 2.4245 39 1 6.0662 2.2306 3.2990 40 1 4.4238 2.9184 3.3434 41 1 8.5148 5.6598 1.0546 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309205758.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:38 Heat of formation + Delta-G solvation = -130.257101 kcal Electronic energy + Delta-G solvation = -21058.309548 eV Core-core repulsion = 18129.609548 eV Total energy + Delta-G solvation = -2928.700000 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.55026 -38.85654 -36.39188 -34.89650 -34.37084 -32.47460 -31.16747 -29.17985 -27.27360 -26.58532 -23.94643 -23.72603 -22.80852 -20.90270 -19.98599 -19.09021 -17.44699 -17.30573 -16.72707 -16.47075 -15.97600 -15.84046 -15.40821 -14.88267 -14.74815 -14.51392 -14.15491 -14.11607 -13.91403 -13.25892 -13.05926 -12.92104 -12.90938 -12.62847 -12.60559 -12.30398 -12.09493 -11.87214 -11.78164 -11.74192 -11.43334 -11.35814 -11.07302 -10.82971 -10.67442 -10.23174 -9.87977 -8.37787 -6.43895 1.28920 1.30399 1.40602 2.26469 2.47956 2.98617 3.56910 3.65670 3.82116 3.89332 4.11237 4.15867 4.21998 4.33661 4.38163 4.40610 4.50277 4.50715 4.59548 4.65939 4.69535 4.77796 4.88670 4.90154 4.93153 5.01029 5.03383 5.07831 5.18302 5.21016 5.24134 5.30313 5.33574 5.39071 5.54951 5.58188 5.68441 6.08491 6.30779 6.63178 6.89433 7.23460 8.79222 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.027460 B = 0.008024 C = 0.007395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.435818 B = 3488.484777 C = 3785.461157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.383 6.383 3 C 0.115 3.885 4 H 0.059 0.941 5 C -0.136 4.136 6 C -0.101 4.101 7 C -0.122 4.122 8 C -0.134 4.134 9 C 0.109 3.891 10 C -0.129 4.129 11 C -0.120 4.120 12 C -0.143 4.143 13 C 0.200 3.800 14 H 0.023 0.977 15 C -0.519 4.519 16 H 0.029 0.971 17 C 0.023 3.977 18 N -0.939 5.939 19 Si 0.934 3.066 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.242 1.242 23 O -0.386 6.386 24 H 0.047 0.953 25 H 0.104 0.896 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.267 -15.319 -2.689 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.302 6.302 3 C 0.057 3.943 4 H 0.077 0.923 5 C -0.174 4.174 6 C -0.138 4.138 7 C -0.159 4.159 8 C -0.172 4.172 9 C 0.069 3.931 10 C -0.167 4.167 11 C -0.158 4.158 12 C -0.181 4.181 13 C 0.144 3.856 14 H 0.040 0.960 15 C -0.556 4.556 16 H 0.047 0.953 17 C -0.175 4.175 18 N -0.578 5.578 19 Si 0.756 3.244 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.166 1.166 23 O -0.307 6.307 24 H 0.066 0.934 25 H 0.123 0.877 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.096 -15.209 -2.774 19.030 hybrid contribution 0.773 0.501 0.122 0.930 sum -10.323 -14.708 -2.653 18.164 Atomic orbital electron populations 1.22991 0.79732 1.03920 1.00520 1.87819 1.20941 1.26337 1.95082 1.21603 0.92586 0.84753 0.95368 0.92327 1.21930 1.00422 0.99466 0.95595 1.21325 0.94218 1.00006 0.98262 1.21488 0.98326 1.00534 0.95599 1.22024 0.99250 0.99880 0.96017 1.21407 0.92836 0.84388 0.94472 1.22037 0.97403 1.02358 0.94893 1.21707 0.96807 0.96061 1.01195 1.22276 1.00225 0.96611 0.99028 1.19896 0.81908 0.94384 0.89450 0.95957 1.21002 0.92706 0.91701 1.50241 0.95281 1.25762 0.99521 0.98504 0.93721 1.70016 1.14887 1.22121 1.50818 0.85945 0.78077 0.80365 0.80002 1.18880 1.20274 1.16559 1.87946 1.35440 1.28057 1.79229 0.93416 0.87722 0.93794 0.90333 0.92640 0.90431 0.91565 0.91131 0.94425 0.93035 0.89268 0.92311 0.89079 0.90251 0.91819 0.92832 0.93269 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.82 113.37 1.23 1.66 16 2 O -0.38 -9.59 8.37 -148.98 -1.25 -10.84 16 3 C 0.11 3.44 2.09 30.59 0.06 3.50 16 4 H 0.06 1.78 7.79 -2.39 -0.02 1.76 16 5 C -0.14 -4.00 5.48 30.59 0.17 -3.83 16 6 C -0.10 -2.77 5.78 30.60 0.18 -2.59 16 7 C -0.12 -3.98 5.78 30.60 0.18 -3.80 16 8 C -0.13 -4.42 3.89 30.59 0.12 -4.30 16 9 C 0.11 3.82 0.51 -10.77 -0.01 3.81 16 10 C -0.13 -4.08 4.73 30.68 0.15 -3.93 16 11 C -0.12 -3.99 5.72 30.72 0.18 -3.82 16 12 C -0.14 -6.14 5.40 30.69 0.17 -5.98 16 13 C 0.20 9.81 1.98 29.88 0.06 9.87 16 14 H 0.02 1.10 3.47 -2.38 -0.01 1.09 16 15 C -0.52 -31.04 9.23 25.60 0.24 -30.80 16 16 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 17 C 0.02 1.38 5.47 84.65 0.46 1.84 16 18 N -0.94 -59.06 13.96 21.45 0.30 -58.76 16 19 Si 0.93 44.11 27.00 68.60 1.85 45.96 16 20 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.24 -10.50 6.80 99.48 0.68 -9.83 16 23 O -0.39 -17.76 8.54 -148.98 -1.27 -19.03 16 24 H 0.05 0.76 7.87 -2.38 -0.02 0.75 16 25 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.04 0.74 8.08 -2.39 -0.02 0.72 16 27 H 0.08 1.89 7.87 -2.39 -0.02 1.87 16 28 H 0.05 1.96 7.69 -2.39 -0.02 1.94 16 29 H 0.08 1.91 7.68 -2.39 -0.02 1.90 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.04 1.49 7.69 -2.39 -0.02 1.48 16 33 H 0.05 1.82 4.98 -2.38 -0.01 1.81 16 34 H 0.09 2.57 7.69 -2.39 -0.02 2.55 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.09 2.45 7.75 -2.39 -0.02 2.43 16 37 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.06 2.04 6.62 -2.39 -0.02 2.02 16 39 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 41 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -67.15 304.32 3.76 -63.39 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.96 Total: 17.65 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 3.17 Total: -38.37 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.30 Total: -58.76 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -2.52 Total: -29.86 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.85 Total: 45.96 kcal Total: -67.15 3.76 -63.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309205758.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.868 kcal (2) G-P(sol) polarization free energy of solvation -67.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds