Wall clock time and date at job start Mon Mar 30 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47478 * 2 1 4 4 H 1.09007 * 109.48950 * 305.04988 * 3 2 1 5 5 C 1.53198 * 109.49488 * 185.00433 * 3 2 1 6 6 C 1.52638 * 109.18930 * 183.25464 * 5 3 2 7 7 C 1.54499 * 109.74684 * 294.69448 * 6 5 3 8 8 C 1.55387 * 100.88147 * 276.56258 * 7 6 5 9 9 C 1.54418 * 102.29528 * 326.33321 * 8 7 6 10 10 C 1.52998 * 109.83611 * 140.85946 * 9 8 7 11 11 C 1.50700 * 109.83374 * 261.84334 * 9 8 7 12 12 H 1.07999 * 120.00092 * 359.56585 * 11 9 8 13 13 C 1.37879 * 120.00234 * 179.56980 * 11 9 8 14 14 N 1.31515 * 119.99656 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00047 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46725 * 90.00370 * 15 13 11 17 17 H 1.48501 * 109.47117 * 210.00076 * 15 13 11 18 18 H 1.48502 * 109.47312 * 330.00147 * 15 13 11 19 19 O 1.43099 * 110.59462 * 178.40654 * 6 5 3 20 20 C 1.52638 * 110.28288 * 55.72359 * 6 5 3 21 21 C 1.53193 * 109.19255 * 304.28050 * 20 6 5 22 22 O 1.42901 * 109.34900 * 56.74485 * 21 20 6 23 23 H 1.08998 * 109.47628 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47390 * 300.00181 * 1 2 3 25 25 H 1.08999 * 109.47330 * 60.00141 * 1 2 3 26 26 H 1.09003 * 109.47390 * 239.99819 * 2 1 3 27 27 H 1.08999 * 109.47330 * 119.99859 * 2 1 3 28 28 H 1.08993 * 109.51542 * 63.33322 * 5 3 2 29 29 H 1.09000 * 109.50965 * 303.16517 * 5 3 2 30 30 H 1.09003 * 111.13808 * 158.65740 * 7 6 5 31 31 H 1.09003 * 111.16941 * 34.48461 * 7 6 5 32 32 H 1.09000 * 110.83821 * 208.13333 * 8 7 6 33 33 H 1.08998 * 110.83755 * 84.53024 * 8 7 6 34 34 H 1.09001 * 109.46639 * 300.42865 * 10 9 8 35 35 H 1.08994 * 109.47347 * 60.42440 * 10 9 8 36 36 H 1.09002 * 109.47570 * 180.43229 * 10 9 8 37 37 H 0.97005 * 119.99396 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.51180 * 64.19389 * 20 6 5 39 39 H 1.09001 * 109.51755 * 184.36073 * 20 6 5 40 40 H 1.09000 * 109.49390 * 296.77962 * 21 20 6 41 41 H 1.09002 * 109.51085 * 176.71565 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6049 1.9821 -0.8413 5 6 3.5668 1.4449 -0.1260 6 6 4.0748 2.8819 -0.0438 7 6 3.5694 3.6847 -1.2632 8 6 4.6331 3.3005 -2.3287 9 6 5.9115 3.1464 -1.4764 10 6 6.7315 1.9572 -1.9807 11 6 6.7338 4.4068 -1.5553 12 1 6.3928 5.2373 -2.1556 13 6 7.9214 4.4998 -0.8611 14 7 8.3369 3.4883 -0.1304 15 14 8.9410 6.0620 -0.9595 16 1 8.5247 6.9935 0.1196 17 1 10.3783 5.7261 -0.7963 18 1 8.7304 6.7082 -2.2799 19 8 5.5032 2.9160 -0.1214 20 6 3.5904 3.5414 1.2447 21 6 2.0627 3.4511 1.3133 22 8 1.6649 2.0816 1.2220 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8538 1.0113 -1.0839 29 1 3.9998 0.8586 0.6845 30 1 3.5837 4.7559 -1.0620 31 1 2.5745 3.3573 -1.5652 32 1 4.7509 4.0968 -3.0638 33 1 4.3743 2.3591 -2.8132 34 1 6.1336 1.0484 -1.9120 35 1 7.0168 2.1268 -3.0189 36 1 7.6282 1.8491 -1.3704 37 1 9.1723 3.5539 0.3583 38 1 4.0246 3.0274 2.1023 39 1 3.8942 4.5882 1.2545 40 1 1.6277 4.0122 0.4863 41 1 1.7154 3.8684 2.2585 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309454545.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:00 Heat of formation + Delta-G solvation = -107.917041 kcal Electronic energy + Delta-G solvation = -20697.593495 eV Core-core repulsion = 17769.862232 eV Total energy + Delta-G solvation = -2927.731262 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.00442 -37.57893 -33.88018 -33.37627 -31.56267 -30.96388 -29.56410 -28.18045 -25.20920 -24.19069 -23.45209 -22.34679 -21.07823 -19.38234 -18.42721 -16.70389 -16.22348 -15.82455 -14.79257 -14.56151 -14.42968 -13.93511 -13.63099 -13.52909 -13.23477 -12.84732 -12.47658 -12.28603 -11.77119 -11.63254 -11.41744 -11.23318 -11.02778 -10.93735 -10.86224 -10.81293 -10.70702 -10.50011 -10.38831 -10.24175 -9.98439 -9.59559 -9.33162 -9.18644 -9.01748 -8.46076 -7.83575 -5.92539 -4.08675 3.30798 3.37811 3.39946 4.01000 4.43678 4.74100 4.95494 5.13716 5.28049 5.35085 5.40151 5.44458 5.49531 5.54873 5.63468 5.65024 5.85126 5.88875 5.98084 6.03143 6.06797 6.09600 6.20265 6.30811 6.33695 6.42128 6.52813 6.56277 6.65537 6.82375 6.86649 6.93807 6.97776 7.15014 7.39708 7.51949 7.80227 8.12008 8.40331 8.68021 9.09531 9.62326 11.09344 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.036122 B = 0.006326 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.971493 B = 4424.954484 C = 4678.181094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.093 3.907 4 H 0.056 0.944 5 C -0.156 4.156 6 C 0.107 3.893 7 C -0.144 4.144 8 C -0.141 4.141 9 C 0.229 3.771 10 C -0.140 4.140 11 C -0.531 4.531 12 H 0.057 0.943 13 C 0.081 3.919 14 N -0.860 5.860 15 Si 0.886 3.114 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 O -0.338 6.338 20 C -0.143 4.143 21 C 0.067 3.933 22 O -0.382 6.382 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.011 0.989 35 H 0.035 0.965 36 H 0.089 0.911 37 H 0.259 0.741 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.047 0.953 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.370 -3.583 -0.159 12.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.035 3.965 4 H 0.074 0.926 5 C -0.194 4.194 6 C 0.066 3.934 7 C -0.181 4.181 8 C -0.179 4.179 9 C 0.192 3.808 10 C -0.197 4.197 11 C -0.569 4.569 12 H 0.075 0.925 13 C -0.124 4.124 14 N -0.497 5.497 15 Si 0.714 3.286 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 O -0.257 6.257 20 C -0.181 4.181 21 C -0.010 4.010 22 O -0.302 6.302 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.030 0.970 35 H 0.054 0.946 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.163 -3.780 0.265 12.740 hybrid contribution 0.712 1.085 -0.417 1.363 sum -11.451 -2.695 -0.151 11.765 Atomic orbital electron populations 1.21715 0.95633 1.01106 1.02082 1.21549 0.96208 0.94947 1.02666 1.22204 0.94070 0.93373 0.86837 0.92601 1.22569 0.94826 0.99059 1.02917 1.21525 0.86319 0.92000 0.93540 1.23218 0.97892 1.00501 0.96497 1.23214 0.96662 0.99756 0.98257 1.19656 0.89156 0.93774 0.78221 1.22006 1.02646 0.95422 0.99675 1.21221 1.05056 1.00278 1.30320 0.92493 1.24991 0.97152 0.95856 0.94400 1.69963 1.21218 1.29829 1.28660 0.86717 0.79529 0.83987 0.78408 1.20644 1.21190 1.19935 1.88739 1.14260 1.92381 1.30339 1.22156 0.95035 1.02124 0.98803 1.22565 0.94269 0.82775 1.01364 1.87824 1.79035 1.24664 1.38652 0.93091 0.92044 0.93127 0.90809 0.91191 0.91096 0.91015 0.91092 0.92381 0.91499 0.93202 0.97040 0.94643 0.89241 0.93133 0.91052 0.90499 0.93465 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.81 37.15 0.36 -1.24 16 2 C -0.12 -1.45 5.64 -26.73 -0.15 -1.60 16 3 C 0.09 1.38 2.42 -26.63 -0.06 1.31 16 4 H 0.06 0.81 6.39 -51.93 -0.33 0.48 16 5 C -0.16 -2.75 4.57 -26.81 -0.12 -2.88 16 6 C 0.11 2.14 0.89 -90.20 -0.08 2.06 16 7 C -0.14 -2.68 4.99 -24.68 -0.12 -2.80 16 8 C -0.14 -2.93 5.69 -24.72 -0.14 -3.07 16 9 C 0.23 5.70 0.82 -91.03 -0.07 5.63 16 10 C -0.14 -3.42 8.52 37.16 0.32 -3.11 16 11 C -0.53 -14.55 8.23 -34.44 -0.28 -14.83 16 12 H 0.06 1.54 7.48 -52.49 -0.39 1.15 16 13 C 0.08 2.25 5.26 -17.82 -0.09 2.16 16 14 N -0.86 -24.81 10.93 55.43 0.61 -24.21 16 15 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 19 O -0.34 -8.59 9.55 -35.23 -0.34 -8.93 16 20 C -0.14 -2.59 5.30 -26.82 -0.14 -2.73 16 21 C 0.07 0.99 6.64 37.26 0.25 1.24 16 22 O -0.38 -5.99 9.94 -35.23 -0.35 -6.34 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.71 7.83 -51.93 -0.41 0.30 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.26 7.39 -51.93 -0.38 0.88 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.07 1.35 7.99 -51.93 -0.41 0.93 16 31 H 0.06 0.93 6.07 -51.93 -0.32 0.62 16 32 H 0.07 1.37 7.60 -51.93 -0.39 0.98 16 33 H 0.05 0.95 7.45 -51.93 -0.39 0.56 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.08 1.42 8.08 -51.93 -0.42 1.00 16 40 H 0.05 0.65 7.44 -51.93 -0.39 0.27 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 311.45 15.07 4.69 4.69 Total: -1.00 -29.50 311.45 -7.84 -37.35 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.09 Total: 1.10 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -0.35 Total: -19.86 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 0.61 Total: -24.21 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.69 Total: -15.27 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.50 -7.84 -37.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309454545.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.571 kcal (2) G-P(sol) polarization free energy of solvation -29.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds