Wall clock time and date at job start Mon Mar 30 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47478 * 2 1 4 4 H 1.09007 * 109.48950 * 305.04988 * 3 2 1 5 5 C 1.53198 * 109.49488 * 185.00433 * 3 2 1 6 6 C 1.52638 * 109.18930 * 183.25464 * 5 3 2 7 7 C 1.54499 * 109.74684 * 294.69448 * 6 5 3 8 8 C 1.55387 * 100.88147 * 276.56258 * 7 6 5 9 9 C 1.54418 * 102.29528 * 326.33321 * 8 7 6 10 10 C 1.52998 * 109.83611 * 140.85946 * 9 8 7 11 11 C 1.50700 * 109.83374 * 261.84334 * 9 8 7 12 12 H 1.07999 * 120.00092 * 359.56585 * 11 9 8 13 13 C 1.37879 * 120.00234 * 179.56980 * 11 9 8 14 14 N 1.31515 * 119.99656 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00047 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46725 * 90.00370 * 15 13 11 17 17 H 1.48501 * 109.47117 * 210.00076 * 15 13 11 18 18 H 1.48502 * 109.47312 * 330.00147 * 15 13 11 19 19 O 1.43099 * 110.59462 * 178.40654 * 6 5 3 20 20 C 1.52638 * 110.28288 * 55.72359 * 6 5 3 21 21 C 1.53193 * 109.19255 * 304.28050 * 20 6 5 22 22 O 1.42901 * 109.34900 * 56.74485 * 21 20 6 23 23 H 1.08998 * 109.47628 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47390 * 300.00181 * 1 2 3 25 25 H 1.08999 * 109.47330 * 60.00141 * 1 2 3 26 26 H 1.09003 * 109.47390 * 239.99819 * 2 1 3 27 27 H 1.08999 * 109.47330 * 119.99859 * 2 1 3 28 28 H 1.08993 * 109.51542 * 63.33322 * 5 3 2 29 29 H 1.09000 * 109.50965 * 303.16517 * 5 3 2 30 30 H 1.09003 * 111.13808 * 158.65740 * 7 6 5 31 31 H 1.09003 * 111.16941 * 34.48461 * 7 6 5 32 32 H 1.09000 * 110.83821 * 208.13333 * 8 7 6 33 33 H 1.08998 * 110.83755 * 84.53024 * 8 7 6 34 34 H 1.09001 * 109.46639 * 300.42865 * 10 9 8 35 35 H 1.08994 * 109.47347 * 60.42440 * 10 9 8 36 36 H 1.09002 * 109.47570 * 180.43229 * 10 9 8 37 37 H 0.97005 * 119.99396 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.51180 * 64.19389 * 20 6 5 39 39 H 1.09001 * 109.51755 * 184.36073 * 20 6 5 40 40 H 1.09000 * 109.49390 * 296.77962 * 21 20 6 41 41 H 1.09002 * 109.51085 * 176.71565 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6049 1.9821 -0.8413 5 6 3.5668 1.4449 -0.1260 6 6 4.0748 2.8819 -0.0438 7 6 3.5694 3.6847 -1.2632 8 6 4.6331 3.3005 -2.3287 9 6 5.9115 3.1464 -1.4764 10 6 6.7315 1.9572 -1.9807 11 6 6.7338 4.4068 -1.5553 12 1 6.3928 5.2373 -2.1556 13 6 7.9214 4.4998 -0.8611 14 7 8.3369 3.4883 -0.1304 15 14 8.9410 6.0620 -0.9595 16 1 8.5247 6.9935 0.1196 17 1 10.3783 5.7261 -0.7963 18 1 8.7304 6.7082 -2.2799 19 8 5.5032 2.9160 -0.1214 20 6 3.5904 3.5414 1.2447 21 6 2.0627 3.4511 1.3133 22 8 1.6649 2.0816 1.2220 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8538 1.0113 -1.0839 29 1 3.9998 0.8586 0.6845 30 1 3.5837 4.7559 -1.0620 31 1 2.5745 3.3573 -1.5652 32 1 4.7509 4.0968 -3.0638 33 1 4.3743 2.3591 -2.8132 34 1 6.1336 1.0484 -1.9120 35 1 7.0168 2.1268 -3.0189 36 1 7.6282 1.8491 -1.3704 37 1 9.1723 3.5539 0.3583 38 1 4.0246 3.0274 2.1023 39 1 3.8942 4.5882 1.2545 40 1 1.6277 4.0122 0.4863 41 1 1.7154 3.8684 2.2585 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309454545.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:00 Heat of formation + Delta-G solvation = -125.125682 kcal Electronic energy + Delta-G solvation = -20698.339717 eV Core-core repulsion = 17769.862232 eV Total energy + Delta-G solvation = -2928.477485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.46808 -39.08100 -35.28181 -34.87108 -33.30406 -32.74583 -30.76547 -29.85588 -27.25959 -25.50989 -24.75641 -23.87860 -22.22402 -21.19434 -19.92366 -18.66387 -17.41185 -17.15681 -16.59815 -16.26004 -15.83854 -15.44739 -15.03376 -14.65930 -14.60451 -14.55883 -13.87497 -13.77774 -13.48051 -13.21770 -12.87804 -12.77456 -12.60632 -12.55284 -12.42424 -12.21014 -12.18252 -12.01970 -11.94435 -11.81941 -11.53380 -11.16861 -10.99983 -10.78156 -10.56410 -10.42601 -9.68217 -8.00967 -6.23889 1.39761 1.40932 1.50214 2.43177 2.85662 3.07401 3.45528 3.73567 3.91618 3.97061 4.05301 4.14048 4.22537 4.31804 4.38672 4.46747 4.52035 4.59377 4.70466 4.75643 4.79000 4.87128 4.93397 4.98620 5.05203 5.06700 5.07924 5.15077 5.15621 5.26201 5.34930 5.40143 5.47070 5.49644 5.53393 5.69258 6.11305 6.33073 6.37174 6.70171 7.20532 7.52486 8.99464 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.036122 B = 0.006326 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.971493 B = 4424.954484 C = 4678.181094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.097 3.903 4 H 0.070 0.930 5 C -0.148 4.148 6 C 0.092 3.908 7 C -0.131 4.131 8 C -0.137 4.137 9 C 0.216 3.784 10 C -0.133 4.133 11 C -0.547 4.547 12 H 0.053 0.947 13 C 0.032 3.968 14 N -0.891 5.891 15 Si 0.946 3.054 16 H -0.280 1.280 17 H -0.284 1.284 18 H -0.265 1.265 19 O -0.377 6.377 20 C -0.142 4.142 21 C 0.074 3.926 22 O -0.389 6.389 23 H 0.066 0.934 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.040 0.960 36 H 0.056 0.944 37 H 0.256 0.744 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.572 -3.331 -0.943 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C 0.039 3.961 4 H 0.088 0.912 5 C -0.186 4.186 6 C 0.051 3.949 7 C -0.169 4.169 8 C -0.174 4.174 9 C 0.178 3.822 10 C -0.191 4.191 11 C -0.585 4.585 12 H 0.072 0.928 13 C -0.170 4.170 14 N -0.529 5.529 15 Si 0.772 3.228 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.190 1.190 19 O -0.297 6.297 20 C -0.180 4.180 21 C -0.003 4.003 22 O -0.308 6.308 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.381 -3.525 -0.526 14.816 hybrid contribution 1.405 0.977 -0.155 1.718 sum -12.976 -2.548 -0.680 13.241 Atomic orbital electron populations 1.21676 0.94041 1.02220 1.02119 1.21580 0.97543 0.93284 1.02940 1.22272 0.91700 0.95045 0.87044 0.91207 1.22484 0.97114 0.97056 1.01991 1.21891 0.84039 0.93891 0.95042 1.23159 0.98885 0.99962 0.94875 1.23120 0.95350 1.00761 0.98185 1.19722 0.90805 0.92617 0.79038 1.21898 1.01555 0.96466 0.99196 1.21616 1.05697 1.01234 1.29930 0.92838 1.25723 0.98402 0.98606 0.94279 1.70122 1.21503 1.31600 1.29657 0.85763 0.77971 0.80483 0.78564 1.20616 1.20955 1.18987 1.88662 1.17799 1.92644 1.30595 1.22166 0.97767 1.00914 0.97190 1.22623 0.91391 0.82822 1.03466 1.87841 1.78661 1.25089 1.39210 0.91532 0.92838 0.92207 0.89609 0.91977 0.91247 0.93063 0.91708 0.88971 0.91534 0.91369 0.95469 0.94113 0.92552 0.93470 0.93036 0.91549 0.91702 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.81 71.98 0.71 -1.93 16 2 C -0.12 -2.59 5.64 30.59 0.17 -2.42 16 3 C 0.10 2.62 2.42 30.66 0.07 2.69 16 4 H 0.07 1.72 6.39 -2.38 -0.02 1.71 16 5 C -0.15 -5.09 4.57 30.54 0.14 -4.95 16 6 C 0.09 3.60 0.89 -10.52 -0.01 3.59 16 7 C -0.13 -4.63 4.99 31.92 0.16 -4.47 16 8 C -0.14 -5.45 5.69 31.90 0.18 -5.27 16 9 C 0.22 10.77 0.82 -11.06 -0.01 10.76 16 10 C -0.13 -6.61 8.52 71.98 0.61 -6.00 16 11 C -0.55 -30.26 8.23 25.60 0.21 -30.05 16 12 H 0.05 2.90 7.48 -2.91 -0.02 2.88 16 13 C 0.03 1.79 5.26 84.66 0.45 2.23 16 14 N -0.89 -52.91 10.93 21.45 0.23 -52.67 16 15 Si 0.95 44.13 29.54 68.60 2.03 46.15 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 O -0.38 -19.51 9.55 -148.98 -1.42 -20.93 16 20 C -0.14 -5.08 5.30 30.54 0.16 -4.92 16 21 C 0.07 1.98 6.64 72.05 0.48 2.46 16 22 O -0.39 -11.20 9.94 -148.98 -1.48 -12.68 16 23 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.05 1.07 7.83 -2.39 -0.02 1.05 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.07 2.36 7.39 -2.39 -0.02 2.35 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 2.35 7.99 -2.39 -0.02 2.33 16 31 H 0.09 2.60 6.07 -2.39 -0.01 2.58 16 32 H 0.07 2.63 7.60 -2.39 -0.02 2.61 16 33 H 0.07 2.44 7.45 -2.39 -0.02 2.42 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 3.16 6.06 -2.39 -0.01 3.15 16 37 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 38 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 2.46 8.08 -2.39 -0.02 2.44 16 40 H 0.06 1.55 7.44 -2.39 -0.02 1.53 16 41 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -64.33 311.45 3.66 -60.67 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.98 Total: 17.72 kcal Atomic # 6 Polarization: -41.58 SS G_CDS: 3.32 Total: -38.26 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.23 Total: -52.67 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -2.90 Total: -33.61 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -64.33 3.66 -60.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309454545.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.457 kcal (2) G-P(sol) polarization free energy of solvation -64.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds