Wall clock time and date at job start Mon Mar 30 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47254 * 2 1 4 4 H 1.08993 * 109.49314 * 304.95381 * 3 2 1 5 5 C 1.53193 * 109.51481 * 184.88562 * 3 2 1 6 6 C 1.52636 * 109.19878 * 183.28066 * 5 3 2 7 7 C 1.54496 * 109.75403 * 294.68205 * 6 5 3 8 8 C 1.55628 * 100.88942 * 204.78762 * 7 6 5 9 9 C 1.54423 * 102.18938 * 33.67770 * 8 7 6 10 10 C 1.52999 * 109.83476 * 219.06173 * 9 8 7 11 11 C 1.50699 * 109.82957 * 98.17281 * 9 8 7 12 12 H 1.08002 * 120.00516 * 0.18938 * 11 9 8 13 13 C 1.37884 * 119.99783 * 180.19238 * 11 9 8 14 14 N 1.31514 * 119.99707 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99956 * 180.27458 * 13 11 9 16 16 H 1.48497 * 109.47172 * 179.72730 * 15 13 11 17 17 H 1.48506 * 109.47132 * 299.72429 * 15 13 11 18 18 H 1.48501 * 109.47173 * 59.72550 * 15 13 11 19 19 O 1.43096 * 110.61216 * 178.37298 * 6 5 3 20 20 C 1.52644 * 110.27674 * 55.71418 * 6 5 3 21 21 C 1.53201 * 109.19636 * 304.28007 * 20 6 5 22 22 O 1.42914 * 109.48656 * 65.00088 * 3 2 1 23 23 H 1.08999 * 109.46645 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47005 * 299.99469 * 1 2 3 25 25 H 1.09002 * 109.47250 * 59.99679 * 1 2 3 26 26 H 1.09005 * 109.47304 * 240.00423 * 2 1 3 27 27 H 1.08993 * 109.47245 * 120.00474 * 2 1 3 28 28 H 1.09000 * 109.51509 * 63.36850 * 5 3 2 29 29 H 1.09002 * 109.51882 * 303.19954 * 5 3 2 30 30 H 1.08996 * 111.13368 * 322.71031 * 7 6 5 31 31 H 1.08999 * 111.13853 * 86.90325 * 7 6 5 32 32 H 1.09009 * 110.87558 * 275.51826 * 8 7 6 33 33 H 1.08997 * 110.90533 * 151.85291 * 8 7 6 34 34 H 1.09002 * 109.46791 * 299.80924 * 10 9 8 35 35 H 1.09001 * 109.46798 * 59.80647 * 10 9 8 36 36 H 1.08997 * 109.46980 * 179.80749 * 10 9 8 37 37 H 0.97005 * 119.99656 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.51971 * 64.20147 * 20 6 5 39 39 H 1.09005 * 109.51727 * 184.37300 * 20 6 5 40 40 H 1.08993 * 109.49137 * 176.71401 * 21 20 6 41 41 H 1.08996 * 109.49220 * 296.79936 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6063 1.9816 -0.8421 5 6 3.5670 1.4454 -0.1230 6 6 4.0746 2.8825 -0.0401 7 6 3.5718 3.6850 -1.2608 8 6 4.6541 4.8001 -1.3456 9 6 5.9236 4.0590 -0.8726 10 6 6.7676 4.9841 0.0064 11 6 6.7289 3.6122 -2.0654 12 1 6.3820 3.8318 -3.0643 13 6 7.9088 2.9227 -1.8814 14 7 8.3309 2.6547 -0.6650 15 14 8.9110 2.3755 -3.3597 16 1 10.1296 1.6647 -2.8959 17 1 8.0953 1.4626 -4.2003 18 1 9.3049 3.5641 -4.1581 19 8 5.5032 2.9173 -0.1141 20 6 3.5873 3.5422 1.2473 21 6 2.0594 3.4516 1.3127 22 8 1.6622 2.0818 1.2211 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8561 1.0118 -1.0804 29 1 3.9989 0.8593 0.6883 30 1 3.5689 3.0705 -2.1610 31 1 2.5852 4.1088 -1.0733 32 1 4.4145 5.6257 -0.6753 33 1 4.7699 5.1525 -2.3705 34 1 7.0601 5.8634 -0.5676 35 1 6.1839 5.2938 0.8733 36 1 7.6599 4.4542 0.3396 37 1 9.1608 2.1694 -0.5356 38 1 4.0198 3.0286 2.1059 39 1 3.8907 4.5892 1.2574 40 1 1.7105 3.8690 2.2571 41 1 1.6260 4.0121 0.4845 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309454554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:02 Heat of formation + Delta-G solvation = -124.969199 kcal Electronic energy + Delta-G solvation = -20671.124941 eV Core-core repulsion = 17742.654242 eV Total energy + Delta-G solvation = -2928.470699 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.45156 -39.10610 -35.26397 -34.87729 -33.29264 -32.73652 -30.80095 -29.83858 -27.25943 -25.60960 -24.55478 -23.98344 -22.21857 -21.19358 -19.92396 -18.67434 -17.37538 -17.22381 -16.63077 -16.23973 -15.84680 -15.30509 -15.10763 -14.66560 -14.62576 -14.47190 -13.96869 -13.88242 -13.41985 -13.21443 -12.85497 -12.76415 -12.63018 -12.58961 -12.34827 -12.23251 -12.17652 -12.01065 -11.92011 -11.81831 -11.59215 -11.20203 -10.98441 -10.76903 -10.55499 -10.42548 -9.69248 -8.00905 -6.23973 1.40319 1.41033 1.48447 2.43014 2.85604 3.06193 3.43441 3.79950 3.89762 3.95802 4.04919 4.18082 4.18914 4.29352 4.39370 4.46033 4.49752 4.60809 4.65663 4.74762 4.81932 4.87856 4.96393 4.96553 5.04529 5.06499 5.08467 5.14731 5.15564 5.23638 5.34587 5.40204 5.47337 5.49429 5.53221 5.68833 6.11695 6.32727 6.37140 6.70028 7.20471 7.52327 8.99208 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.027225 B = 0.006852 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.203692 B = 4085.424543 C = 4597.805438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C 0.102 3.898 4 H 0.069 0.931 5 C -0.133 4.133 6 C 0.092 3.908 7 C -0.132 4.132 8 C -0.137 4.137 9 C 0.216 3.784 10 C -0.134 4.134 11 C -0.548 4.548 12 H 0.053 0.947 13 C 0.032 3.968 14 N -0.891 5.891 15 Si 0.946 3.054 16 H -0.286 1.286 17 H -0.275 1.275 18 H -0.268 1.268 19 O -0.377 6.377 20 C -0.158 4.158 21 C 0.069 3.931 22 O -0.388 6.388 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.040 0.960 35 H 0.027 0.973 36 H 0.056 0.944 37 H 0.256 0.744 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.570 -0.148 1.152 14.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C 0.044 3.956 4 H 0.087 0.913 5 C -0.171 4.171 6 C 0.052 3.948 7 C -0.169 4.169 8 C -0.174 4.174 9 C 0.178 3.822 10 C -0.192 4.192 11 C -0.586 4.586 12 H 0.071 0.929 13 C -0.170 4.170 14 N -0.529 5.529 15 Si 0.772 3.228 16 H -0.212 1.212 17 H -0.200 1.200 18 H -0.193 1.193 19 O -0.297 6.297 20 C -0.196 4.196 21 C -0.008 4.008 22 O -0.308 6.308 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.131 0.869 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.377 -0.465 1.494 14.462 hybrid contribution 1.409 -0.075 -0.871 1.658 sum -12.968 -0.539 0.623 12.994 Atomic orbital electron populations 1.21669 0.93852 1.02244 1.02172 1.21580 0.97681 0.93300 1.02877 1.22167 0.91223 0.95082 0.87120 0.91347 1.22168 0.96986 0.96205 1.01785 1.21884 0.84049 0.94682 0.94230 1.23198 0.98899 0.97122 0.97685 1.23167 0.95274 0.97736 1.01251 1.19715 0.90740 0.83069 0.88654 1.21904 1.01604 0.97976 0.97676 1.21594 1.06468 1.37993 0.92531 0.92867 1.25726 0.98287 0.95268 0.97754 1.70110 1.21667 1.39294 1.21784 0.85828 0.78106 0.78640 0.80259 1.21159 1.20012 1.19286 1.88659 1.17715 1.48806 1.74543 1.22490 0.97928 1.01330 0.97859 1.22714 0.91843 0.82745 1.03456 1.87845 1.78577 1.25208 1.39135 0.91528 0.92639 0.92250 0.89901 0.91887 0.91874 0.93135 0.91904 0.88805 0.91241 0.91534 0.94145 0.95439 0.92500 0.93450 0.92921 0.90970 0.86880 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.81 71.98 0.71 -2.01 16 2 C -0.12 -2.76 5.65 30.60 0.17 -2.59 16 3 C 0.10 2.85 2.44 30.66 0.07 2.93 16 4 H 0.07 1.77 7.44 -2.39 -0.02 1.75 16 5 C -0.13 -4.84 4.58 30.54 0.14 -4.70 16 6 C 0.09 3.61 0.89 -10.52 -0.01 3.60 16 7 C -0.13 -4.64 5.00 32.01 0.16 -4.48 16 8 C -0.14 -5.45 5.71 31.98 0.18 -5.26 16 9 C 0.22 10.78 0.82 -11.06 -0.01 10.77 16 10 C -0.13 -6.63 8.52 71.98 0.61 -6.02 16 11 C -0.55 -30.37 8.23 25.60 0.21 -30.16 16 12 H 0.05 2.88 7.48 -2.91 -0.02 2.86 16 13 C 0.03 1.78 5.26 84.66 0.45 2.22 16 14 N -0.89 -52.96 10.92 21.45 0.23 -52.72 16 15 Si 0.95 44.17 29.54 68.60 2.03 46.20 16 16 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 17 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 O -0.38 -19.54 9.56 -148.98 -1.42 -20.96 16 20 C -0.16 -5.34 5.29 30.54 0.16 -5.18 16 21 C 0.07 1.79 6.63 72.05 0.48 2.26 16 22 O -0.39 -11.17 9.93 -148.98 -1.48 -12.65 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.05 1.13 7.82 -2.39 -0.02 1.11 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 2.40 8.08 -2.39 -0.02 2.38 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.06 2.30 7.99 -2.39 -0.02 2.28 16 31 H 0.09 2.62 6.07 -2.39 -0.01 2.61 16 32 H 0.07 2.47 7.45 -2.38 -0.02 2.45 16 33 H 0.07 2.63 7.60 -2.39 -0.02 2.61 16 34 H 0.04 1.87 8.14 -2.39 -0.02 1.86 16 35 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 3.19 6.03 -2.39 -0.01 3.18 16 37 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 38 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 2.40 7.40 -2.38 -0.02 2.39 16 40 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.07 1.51 6.40 -2.39 -0.02 1.50 16 Total: -1.00 -64.39 311.44 3.66 -60.73 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.98 Total: 18.03 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 3.33 Total: -38.62 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.23 Total: -52.72 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -2.90 Total: -33.62 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -64.39 3.66 -60.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309454554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.242 kcal (2) G-P(sol) polarization free energy of solvation -64.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds