Wall clock time and date at job start Mon Mar 30 2020 06:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00027 * 2 1 4 4 H 1.09002 * 109.46849 * 30.00286 * 3 2 1 5 5 C 1.52987 * 109.47206 * 269.99636 * 3 2 1 6 6 C 1.53001 * 109.50282 * 180.02562 * 5 3 2 7 7 C 1.53016 * 109.46601 * 59.97472 * 6 5 3 8 8 C 1.52988 * 109.44121 * 300.01284 * 7 6 5 9 9 C 1.53088 * 109.43070 * 300.12898 * 8 7 6 10 10 C 1.53189 * 109.13866 * 182.30098 * 9 8 7 11 11 C 1.53171 * 109.02650 * 56.98063 * 10 9 8 12 12 C 1.53088 * 109.19007 * 303.03101 * 11 10 9 13 13 H 1.08994 * 109.47851 * 297.59261 * 12 11 10 14 14 C 1.50694 * 109.48107 * 177.56892 * 12 11 10 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 O 1.42884 * 109.54407 * 180.14945 * 8 7 6 23 23 C 1.52994 * 109.48687 * 60.05660 * 8 7 6 24 24 H 1.08995 * 109.46768 * 60.00078 * 1 2 3 25 25 H 1.08992 * 109.47000 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46936 * 299.99957 * 1 2 3 27 27 H 1.09004 * 109.46787 * 60.01954 * 5 3 2 28 28 H 1.08999 * 109.47116 * 300.03648 * 5 3 2 29 29 H 1.09004 * 109.46909 * 299.98007 * 6 5 3 30 30 H 1.08995 * 109.47525 * 179.97438 * 6 5 3 31 31 H 1.08990 * 109.47676 * 180.02562 * 7 6 5 32 32 H 1.08993 * 109.47535 * 60.00068 * 7 6 5 33 33 H 1.08993 * 109.52699 * 62.40507 * 9 8 7 34 34 H 1.09003 * 109.52851 * 302.19546 * 9 8 7 35 35 H 1.09000 * 109.54209 * 297.12041 * 10 9 8 36 36 H 1.08997 * 109.54783 * 176.84749 * 10 9 8 37 37 H 1.09002 * 109.51763 * 183.11412 * 11 10 9 38 38 H 1.09001 * 109.56373 * 62.97612 * 11 10 9 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.08991 * 109.47751 * 59.93150 * 23 8 7 41 41 H 1.09001 * 109.47460 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2178 1.7713 -1.4424 6 6 2.8407 3.1688 -1.4432 7 6 4.1894 3.1263 -0.7217 8 6 3.9808 2.6610 0.7207 9 6 3.0439 3.6352 1.4396 10 6 2.8855 3.1955 2.8985 11 6 4.2687 3.1286 3.5529 12 6 5.1588 2.1747 2.7520 13 1 4.7325 1.1719 2.7780 14 6 6.5394 2.1498 3.3554 15 1 6.7604 2.7532 4.2234 16 6 7.5206 1.3566 2.7993 17 7 7.2514 0.6213 1.7426 18 14 9.2322 1.3262 3.5469 19 1 10.0686 2.3759 2.9114 20 1 9.1395 1.5833 5.0065 21 1 9.8492 -0.0049 3.3169 22 8 5.2386 2.6239 1.3976 23 6 3.3591 1.2631 0.7212 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.2569 1.8017 -1.9561 28 1 2.8826 1.0770 -1.9563 29 1 2.1757 3.8633 -0.9298 30 1 2.9888 3.5000 -2.4710 31 1 4.6331 4.1218 -0.7218 32 1 4.8544 2.4318 -1.2349 33 1 2.0700 3.6321 0.9504 34 1 3.4666 4.6394 1.4058 35 1 2.4173 2.2117 2.9340 36 1 2.2645 3.9157 3.4311 37 1 4.1706 2.7633 4.5752 38 1 4.7162 4.1224 3.5628 39 1 7.9418 0.0636 1.3512 40 1 4.0243 0.5693 0.2074 41 1 3.2110 0.9316 1.7490 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309488127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:17 Heat of formation + Delta-G solvation = -132.169439 kcal Electronic energy + Delta-G solvation = -20762.777184 eV Core-core repulsion = 17833.994259 eV Total energy + Delta-G solvation = -2928.782925 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.42133 -38.95455 -36.75569 -34.59199 -34.13662 -31.74146 -31.17248 -28.82012 -27.30384 -26.87874 -23.93130 -23.74956 -22.83064 -21.26281 -19.29789 -18.61284 -17.95932 -16.75073 -16.69162 -16.22575 -16.00967 -15.69793 -15.56206 -15.13130 -14.70858 -14.52500 -14.27254 -13.71977 -13.62472 -13.32237 -12.99204 -12.80997 -12.70754 -12.62295 -12.42222 -12.23077 -12.00103 -11.94582 -11.84956 -11.65377 -11.43228 -11.31436 -11.01848 -10.76213 -10.44250 -10.30936 -9.60408 -8.12410 -6.32795 1.39553 1.41207 1.51513 2.40909 2.82977 3.02633 3.51841 3.78439 3.87598 4.06581 4.13821 4.17446 4.19366 4.29781 4.33212 4.46931 4.49043 4.54361 4.58939 4.62553 4.66336 4.85035 4.86411 4.88988 4.99199 5.02030 5.08962 5.13823 5.15533 5.24046 5.26484 5.31862 5.34372 5.50841 5.56864 5.62635 5.83233 6.25532 6.35818 6.70423 7.29193 7.44080 8.94588 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.025970 B = 0.006737 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.923289 B = 4155.069090 C = 4251.122488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.417 6.417 3 C 0.098 3.902 4 H 0.080 0.920 5 C -0.136 4.136 6 C -0.102 4.102 7 C -0.104 4.104 8 C 0.108 3.892 9 C -0.134 4.134 10 C -0.117 4.117 11 C -0.139 4.139 12 C 0.218 3.782 13 H -0.017 1.017 14 C -0.555 4.555 15 H 0.062 0.938 16 C 0.024 3.976 17 N -0.894 5.894 18 Si 0.960 3.040 19 H -0.275 1.275 20 H -0.262 1.262 21 H -0.281 1.281 22 O -0.380 6.380 23 C -0.123 4.123 24 H 0.058 0.942 25 H 0.093 0.907 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.259 0.741 40 H 0.031 0.969 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.423 4.755 -5.186 16.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.337 6.337 3 C 0.041 3.959 4 H 0.098 0.902 5 C -0.173 4.173 6 C -0.139 4.139 7 C -0.142 4.142 8 C 0.068 3.932 9 C -0.172 4.172 10 C -0.155 4.155 11 C -0.177 4.177 12 C 0.162 3.838 13 H 0.000 1.000 14 C -0.592 4.592 15 H 0.080 0.920 16 C -0.178 4.178 17 N -0.531 5.531 18 Si 0.784 3.216 19 H -0.201 1.201 20 H -0.187 1.187 21 H -0.207 1.207 22 O -0.300 6.300 23 C -0.161 4.161 24 H 0.076 0.924 25 H 0.112 0.888 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.050 0.950 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.081 4.512 -5.389 15.738 hybrid contribution 1.053 -0.496 0.560 1.292 sum -13.028 4.015 -4.829 14.463 Atomic orbital electron populations 1.22990 0.79569 1.03683 1.01006 1.87919 1.21586 1.28921 1.95258 1.22170 0.93370 0.84191 0.96148 0.90180 1.22019 1.01961 0.97339 0.96024 1.21486 0.94666 0.96404 1.01389 1.21485 0.98690 1.00910 0.93108 1.21404 0.86156 0.92333 0.93353 1.22229 1.00191 0.99036 0.95716 1.21641 0.96358 1.01304 0.96163 1.22119 0.96215 1.00066 0.99262 1.19494 0.94177 0.90672 0.79471 0.99959 1.21477 0.97475 1.26879 1.13355 0.91971 1.25929 1.02905 0.94154 0.94815 1.70199 1.34456 1.26539 1.21938 0.85558 0.79428 0.77431 0.79182 1.20085 1.18653 1.20671 1.88260 1.27967 1.86571 1.27198 1.21989 0.96046 0.98399 0.99632 0.92381 0.88839 0.93318 0.89225 0.93011 0.89552 0.89279 0.91474 0.94087 0.88791 0.91458 0.92829 0.89790 0.92464 0.92935 0.93194 0.94969 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.82 113.37 1.23 1.72 16 2 O -0.42 -13.30 10.35 -148.98 -1.54 -14.84 16 3 C 0.10 3.01 2.34 30.59 0.07 3.08 16 4 H 0.08 2.09 6.01 -2.39 -0.01 2.07 16 5 C -0.14 -3.52 5.54 30.59 0.17 -3.35 16 6 C -0.10 -2.47 5.65 30.60 0.17 -2.30 16 7 C -0.10 -3.63 5.11 30.60 0.16 -3.47 16 8 C 0.11 4.35 0.85 -10.77 -0.01 4.34 16 9 C -0.13 -4.35 4.21 30.69 0.13 -4.22 16 10 C -0.12 -3.98 5.72 30.71 0.18 -3.81 16 11 C -0.14 -5.98 5.35 30.68 0.16 -5.82 16 12 C 0.22 11.75 2.17 29.88 0.06 11.81 16 13 H -0.02 -1.02 6.34 -2.39 -0.02 -1.03 16 14 C -0.55 -32.62 8.79 25.60 0.23 -32.40 16 15 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 16 C 0.02 1.44 5.40 84.66 0.46 1.90 16 17 N -0.89 -55.60 12.84 21.45 0.28 -55.32 16 18 Si 0.96 45.44 29.54 68.60 2.03 47.47 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 O -0.38 -20.32 9.27 -148.98 -1.38 -21.70 16 23 C -0.12 -5.07 3.84 30.60 0.12 -4.95 16 24 H 0.06 0.97 7.87 -2.39 -0.02 0.95 16 25 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 0.91 8.08 -2.39 -0.02 0.90 16 27 H 0.09 1.77 7.87 -2.38 -0.02 1.76 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.09 1.73 6.48 -2.38 -0.02 1.72 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 2.36 4.80 -2.39 -0.01 2.35 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 1.85 6.61 -2.39 -0.02 1.84 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.05 2.15 4.97 -2.39 -0.01 2.14 16 Total: -1.00 -70.78 305.62 3.49 -67.29 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.99 Total: 14.58 kcal Atomic # 6 Polarization: -40.59 SS G_CDS: 3.12 Total: -37.47 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.28 Total: -55.32 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -2.92 Total: -36.54 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -70.78 3.49 -67.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309488127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.884 kcal (2) G-P(sol) polarization free energy of solvation -70.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds