Wall clock time and date at job start Mon Mar 30 2020 06:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99824 * 2 1 4 4 H 1.08995 * 109.46808 * 30.00061 * 3 2 1 5 5 C 1.52994 * 109.46615 * 270.00267 * 3 2 1 6 6 C 1.53009 * 109.43856 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46706 * 60.04968 * 6 5 3 8 8 C 1.52990 * 109.50683 * 300.01807 * 7 6 5 9 9 C 1.53092 * 109.40475 * 179.81773 * 8 7 6 10 10 C 1.53175 * 109.17989 * 177.55321 * 9 8 7 11 11 C 1.53186 * 109.02488 * 303.01536 * 10 9 8 12 12 C 1.53097 * 109.14868 * 57.01491 * 11 10 9 13 13 H 1.08999 * 109.48085 * 62.36462 * 12 11 10 14 14 C 1.50703 * 109.47784 * 182.38820 * 12 11 10 15 15 H 1.08001 * 119.99519 * 359.97438 * 14 12 11 16 16 C 1.37877 * 120.00118 * 180.02562 * 14 12 11 17 17 N 1.31515 * 119.99643 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00092 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47280 * 59.99520 * 18 16 14 20 20 H 1.48501 * 109.47144 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46851 * 299.99678 * 18 16 14 22 22 O 1.42875 * 109.51817 * 299.76746 * 8 7 6 23 23 C 1.52988 * 109.50396 * 59.88750 * 8 7 6 24 24 H 1.08994 * 109.47100 * 60.00484 * 1 2 3 25 25 H 1.09004 * 109.46835 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47166 * 300.00160 * 1 2 3 27 27 H 1.08993 * 109.48052 * 299.95020 * 5 3 2 28 28 H 1.09002 * 109.47690 * 59.96798 * 5 3 2 29 29 H 1.08994 * 109.47459 * 180.02562 * 6 5 3 30 30 H 1.08997 * 109.47283 * 300.05568 * 6 5 3 31 31 H 1.08993 * 109.46714 * 180.02562 * 7 6 5 32 32 H 1.09008 * 109.46108 * 60.02458 * 7 6 5 33 33 H 1.09006 * 109.51728 * 57.64509 * 9 8 7 34 34 H 1.09004 * 109.52616 * 297.46494 * 9 8 7 35 35 H 1.08993 * 109.55181 * 183.14798 * 10 9 8 36 36 H 1.09001 * 109.54683 * 62.87389 * 10 9 8 37 37 H 1.08997 * 109.52349 * 176.91205 * 11 10 9 38 38 H 1.08998 * 109.52583 * 297.04512 * 11 10 9 39 39 H 0.96998 * 119.99654 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.46787 * 60.13510 * 23 8 7 41 41 H 1.09002 * 109.46139 * 180.11808 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2175 1.7714 -1.4425 6 6 2.8392 3.1694 -1.4418 7 6 4.1883 3.1272 -0.7212 8 6 3.9827 2.6598 0.7210 9 6 5.3344 2.6140 1.4383 10 6 5.1157 2.2046 2.8981 11 6 4.1433 3.1905 3.5529 12 6 2.8373 3.2130 2.7543 13 1 2.3767 2.2255 2.7828 14 6 1.8966 4.2239 3.3579 15 1 2.1992 4.7931 4.2244 16 6 0.6492 4.4214 2.8046 17 7 0.2807 3.7278 1.7497 18 14 -0.5170 5.6738 3.5531 19 1 0.1100 7.0194 3.5139 20 1 -1.7837 5.6957 2.7783 21 1 -0.8043 5.3025 4.9620 22 8 3.1152 3.5703 1.3989 23 6 3.3589 1.2628 0.7211 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 2.8834 1.0781 -1.9562 28 1 1.2568 1.8008 -1.9565 29 1 2.9868 3.5021 -2.4692 30 1 2.1740 3.8626 -0.9270 31 1 4.6309 4.1232 -0.7203 32 1 4.8536 2.4342 -1.2363 33 1 5.7994 3.5992 1.4022 34 1 5.9820 1.8864 0.9491 35 1 6.0675 2.2242 3.4289 36 1 4.6963 1.1992 2.9359 37 1 3.9391 2.8754 4.5762 38 1 4.5845 4.1871 3.5598 39 1 -0.5967 3.8670 1.3602 40 1 4.0235 0.5681 0.2076 41 1 3.2108 0.9314 1.7489 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309488129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:22 Heat of formation + Delta-G solvation = -116.969038 kcal Electronic energy + Delta-G solvation = -21216.146778 eV Core-core repulsion = 18288.022992 eV Total energy + Delta-G solvation = -2928.123786 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.60654 -37.17885 -34.88486 -32.88213 -32.16929 -30.32919 -29.54095 -27.03824 -25.80089 -24.96353 -22.39109 -21.85653 -20.91228 -19.41690 -18.15825 -16.61960 -15.87051 -15.01716 -14.86210 -14.63003 -14.39553 -14.24513 -13.70791 -13.47710 -13.17681 -12.56498 -12.50193 -12.18136 -12.00984 -11.68628 -11.40810 -11.15570 -10.94828 -10.89032 -10.73674 -10.39855 -10.37531 -10.30139 -10.12335 -10.06197 -9.78087 -9.60950 -9.34360 -8.78008 -8.71803 -8.41052 -7.77449 -6.03510 -4.13383 3.30908 3.35198 3.38578 4.39915 4.41432 4.98792 5.27265 5.37030 5.49869 5.65490 5.70016 5.73002 5.81253 5.85700 5.95859 5.98672 6.04613 6.17927 6.21794 6.22978 6.25291 6.30931 6.35864 6.39061 6.47352 6.53079 6.64995 6.74762 6.76476 6.89521 6.93447 6.99303 7.03867 7.08656 7.22887 7.56371 7.89344 8.01623 8.31291 8.79291 9.16292 9.56363 11.03180 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.010692 C = 0.008175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.439422 B = 2618.119411 C = 3424.287913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.399 6.399 3 C 0.071 3.929 4 H 0.128 0.872 5 C -0.128 4.128 6 C -0.111 4.111 7 C -0.099 4.099 8 C 0.116 3.884 9 C -0.137 4.137 10 C -0.122 4.122 11 C -0.145 4.145 12 C 0.217 3.783 13 H 0.019 0.981 14 C -0.522 4.522 15 H 0.061 0.939 16 C 0.082 3.918 17 N -0.861 5.861 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 O -0.342 6.342 23 C -0.127 4.127 24 H 0.032 0.968 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.259 0.741 40 H 0.052 0.948 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.478 -4.112 -4.299 7.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.319 6.319 3 C 0.014 3.986 4 H 0.145 0.855 5 C -0.166 4.166 6 C -0.148 4.148 7 C -0.137 4.137 8 C 0.075 3.925 9 C -0.175 4.175 10 C -0.160 4.160 11 C -0.183 4.183 12 C 0.161 3.839 13 H 0.036 0.964 14 C -0.560 4.560 15 H 0.079 0.921 16 C -0.124 4.124 17 N -0.498 5.498 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 O -0.261 6.261 23 C -0.165 4.165 24 H 0.051 0.949 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.365 -4.144 -4.511 7.522 hybrid contribution -0.650 0.582 0.413 0.965 sum 3.715 -3.562 -4.098 6.579 Atomic orbital electron populations 1.22632 0.82003 1.00879 1.00401 1.87741 1.19090 1.29860 1.95189 1.22524 0.96403 0.84648 0.94985 0.85494 1.21902 0.99920 0.96888 0.97917 1.21362 0.97350 0.97260 0.98859 1.21466 0.97282 1.00784 0.94163 1.21126 0.89620 0.89594 0.92193 1.22125 0.98012 1.01027 0.96325 1.21657 0.98997 0.99732 0.95588 1.22262 0.98421 0.98051 0.99515 1.19707 0.89113 0.96546 0.78525 0.96366 1.20982 0.97881 1.24248 1.12870 0.92084 1.24967 0.97705 0.95352 0.94343 1.69822 1.19741 1.39469 1.20767 0.86697 0.80071 0.82182 0.79180 1.20231 1.21285 1.20302 1.88356 1.64318 1.46711 1.26749 1.22047 0.95817 0.97719 1.00916 0.94911 0.91167 0.93335 0.93102 0.92947 0.93308 0.89648 0.91945 0.92371 0.91854 0.92726 0.93375 0.92437 0.92714 0.92654 0.93101 0.92892 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.82 101.05 1.09 1.75 16 2 O -0.40 -8.04 10.35 -35.23 -0.36 -8.41 16 3 C 0.07 1.47 2.47 -26.74 -0.07 1.40 16 4 H 0.13 3.03 5.72 -51.93 -0.30 2.73 16 5 C -0.13 -2.35 5.54 -26.73 -0.15 -2.49 16 6 C -0.11 -2.00 5.78 -26.73 -0.15 -2.16 16 7 C -0.10 -1.75 4.94 -26.74 -0.13 -1.88 16 8 C 0.12 2.29 0.68 -90.58 -0.06 2.23 16 9 C -0.14 -2.41 4.91 -26.59 -0.13 -2.54 16 10 C -0.12 -2.19 5.72 -26.54 -0.15 -2.35 16 11 C -0.14 -3.05 5.36 -26.58 -0.14 -3.19 16 12 C 0.22 5.36 2.17 -27.83 -0.06 5.30 16 13 H 0.02 0.50 6.35 -51.93 -0.33 0.17 16 14 C -0.52 -14.15 8.79 -34.44 -0.30 -14.45 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 16 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 17 N -0.86 -23.24 11.29 55.43 0.63 -22.61 16 18 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 22 O -0.34 -8.26 7.95 -35.23 -0.28 -8.54 16 23 C -0.13 -2.54 3.69 -26.74 -0.10 -2.64 16 24 H 0.03 0.53 7.87 -51.93 -0.41 0.12 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.93 7.87 -51.93 -0.41 0.52 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.83 7.69 -51.93 -0.40 1.43 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.03 6.62 -51.93 -0.34 0.69 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.50 4.98 -51.93 -0.26 1.24 16 LS Contribution 307.52 15.07 4.63 4.63 Total: -1.00 -27.59 307.52 -7.92 -35.51 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.06 Total: 2.59 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -0.45 Total: -18.94 kcal Atomic # 7 Polarization: -23.24 SS G_CDS: 0.63 Total: -22.61 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.64 Total: -16.95 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.59 -7.92 -35.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309488129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.461 kcal (2) G-P(sol) polarization free energy of solvation -27.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds