Wall clock time and date at job start Mon Mar 30 2020 06:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99824 * 2 1 4 4 H 1.08995 * 109.46808 * 30.00061 * 3 2 1 5 5 C 1.52994 * 109.46615 * 270.00267 * 3 2 1 6 6 C 1.53009 * 109.43856 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46706 * 60.04968 * 6 5 3 8 8 C 1.52990 * 109.50683 * 300.01807 * 7 6 5 9 9 C 1.53092 * 109.40475 * 179.81773 * 8 7 6 10 10 C 1.53175 * 109.17989 * 177.55321 * 9 8 7 11 11 C 1.53186 * 109.02488 * 303.01536 * 10 9 8 12 12 C 1.53097 * 109.14868 * 57.01491 * 11 10 9 13 13 H 1.08999 * 109.48085 * 62.36462 * 12 11 10 14 14 C 1.50703 * 109.47784 * 182.38820 * 12 11 10 15 15 H 1.08001 * 119.99519 * 359.97438 * 14 12 11 16 16 C 1.37877 * 120.00118 * 180.02562 * 14 12 11 17 17 N 1.31515 * 119.99643 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00092 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47280 * 59.99520 * 18 16 14 20 20 H 1.48501 * 109.47144 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46851 * 299.99678 * 18 16 14 22 22 O 1.42875 * 109.51817 * 299.76746 * 8 7 6 23 23 C 1.52988 * 109.50396 * 59.88750 * 8 7 6 24 24 H 1.08994 * 109.47100 * 60.00484 * 1 2 3 25 25 H 1.09004 * 109.46835 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47166 * 300.00160 * 1 2 3 27 27 H 1.08993 * 109.48052 * 299.95020 * 5 3 2 28 28 H 1.09002 * 109.47690 * 59.96798 * 5 3 2 29 29 H 1.08994 * 109.47459 * 180.02562 * 6 5 3 30 30 H 1.08997 * 109.47283 * 300.05568 * 6 5 3 31 31 H 1.08993 * 109.46714 * 180.02562 * 7 6 5 32 32 H 1.09008 * 109.46108 * 60.02458 * 7 6 5 33 33 H 1.09006 * 109.51728 * 57.64509 * 9 8 7 34 34 H 1.09004 * 109.52616 * 297.46494 * 9 8 7 35 35 H 1.08993 * 109.55181 * 183.14798 * 10 9 8 36 36 H 1.09001 * 109.54683 * 62.87389 * 10 9 8 37 37 H 1.08997 * 109.52349 * 176.91205 * 11 10 9 38 38 H 1.08998 * 109.52583 * 297.04512 * 11 10 9 39 39 H 0.96998 * 119.99654 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.46787 * 60.13510 * 23 8 7 41 41 H 1.09002 * 109.46139 * 180.11808 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2175 1.7714 -1.4425 6 6 2.8392 3.1694 -1.4418 7 6 4.1883 3.1272 -0.7212 8 6 3.9827 2.6598 0.7210 9 6 5.3344 2.6140 1.4383 10 6 5.1157 2.2046 2.8981 11 6 4.1433 3.1905 3.5529 12 6 2.8373 3.2130 2.7543 13 1 2.3767 2.2255 2.7828 14 6 1.8966 4.2239 3.3579 15 1 2.1992 4.7931 4.2244 16 6 0.6492 4.4214 2.8046 17 7 0.2807 3.7278 1.7497 18 14 -0.5170 5.6738 3.5531 19 1 0.1100 7.0194 3.5139 20 1 -1.7837 5.6957 2.7783 21 1 -0.8043 5.3025 4.9620 22 8 3.1152 3.5703 1.3989 23 6 3.3589 1.2628 0.7211 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 2.8834 1.0781 -1.9562 28 1 1.2568 1.8008 -1.9565 29 1 2.9868 3.5021 -2.4692 30 1 2.1740 3.8626 -0.9270 31 1 4.6309 4.1232 -0.7203 32 1 4.8536 2.4342 -1.2363 33 1 5.7994 3.5992 1.4022 34 1 5.9820 1.8864 0.9491 35 1 6.0675 2.2242 3.4289 36 1 4.6963 1.1992 2.9359 37 1 3.9391 2.8754 4.5762 38 1 4.5845 4.1871 3.5598 39 1 -0.5967 3.8670 1.3602 40 1 4.0235 0.5681 0.2076 41 1 3.2108 0.9314 1.7489 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309488129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:22 Heat of formation + Delta-G solvation = -132.441364 kcal Electronic energy + Delta-G solvation = -21216.817708 eV Core-core repulsion = 18288.022992 eV Total energy + Delta-G solvation = -2928.794717 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.18843 -38.75642 -36.46799 -34.69682 -33.93073 -32.00465 -31.04450 -28.76092 -27.25361 -26.69907 -23.99293 -23.51403 -22.51192 -20.92240 -19.78313 -18.59359 -17.45206 -16.66261 -16.53617 -16.37994 -15.98283 -15.82210 -15.22668 -15.01172 -14.79307 -14.25109 -14.08035 -13.71652 -13.60682 -13.18718 -12.93198 -12.81222 -12.69884 -12.59411 -12.40220 -12.10217 -11.98209 -11.90324 -11.68113 -11.61866 -11.38273 -11.19750 -11.00219 -10.71260 -10.37426 -10.15721 -9.52131 -8.05793 -6.24056 1.42402 1.43812 1.50446 2.43869 2.90092 3.13133 3.70402 3.82323 3.94657 4.18336 4.22738 4.26238 4.32132 4.42219 4.50395 4.52389 4.58875 4.65785 4.71705 4.74479 4.81902 4.82499 4.91075 4.93853 4.97064 5.05860 5.14239 5.20084 5.24668 5.32063 5.36342 5.40759 5.46485 5.57388 5.67561 5.68218 5.89336 6.32698 6.46049 6.75579 7.35063 7.50258 8.98014 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.010692 C = 0.008175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.439422 B = 2618.119411 C = 3424.287913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.410 6.410 3 C 0.066 3.934 4 H 0.091 0.909 5 C -0.122 4.122 6 C -0.106 4.106 7 C -0.097 4.097 8 C 0.103 3.897 9 C -0.133 4.133 10 C -0.117 4.117 11 C -0.141 4.141 12 C 0.222 3.778 13 H -0.014 1.014 14 C -0.554 4.554 15 H 0.055 0.945 16 C 0.038 3.962 17 N -0.875 5.875 18 Si 0.950 3.050 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.272 1.272 22 O -0.367 6.367 23 C -0.121 4.121 24 H 0.041 0.959 25 H 0.103 0.897 26 H 0.022 0.978 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.258 0.742 40 H 0.074 0.926 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.887 -4.593 -5.423 9.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.330 6.330 3 C 0.009 3.991 4 H 0.109 0.891 5 C -0.159 4.159 6 C -0.144 4.144 7 C -0.135 4.135 8 C 0.063 3.937 9 C -0.171 4.171 10 C -0.154 4.154 11 C -0.179 4.179 12 C 0.166 3.834 13 H 0.003 0.997 14 C -0.591 4.591 15 H 0.073 0.927 16 C -0.166 4.166 17 N -0.511 5.511 18 Si 0.776 3.224 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.198 1.198 22 O -0.286 6.286 23 C -0.159 4.159 24 H 0.059 0.941 25 H 0.121 0.879 26 H 0.041 0.959 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.779 -4.629 -5.634 9.304 hybrid contribution -1.122 0.691 0.750 1.517 sum 4.657 -3.938 -4.884 7.813 Atomic orbital electron populations 1.22736 0.80821 1.02747 0.99559 1.87706 1.20396 1.29621 1.95290 1.22470 0.96113 0.84162 0.96352 0.89146 1.21837 1.00534 0.97272 0.96290 1.21298 0.96848 0.96169 1.00070 1.21518 0.97436 1.01811 0.92707 1.21488 0.90003 0.88734 0.93465 1.22111 0.97003 1.02184 0.95795 1.21623 0.99290 0.98381 0.96146 1.22150 0.97600 0.98863 0.99282 1.19420 0.90342 0.93994 0.79639 0.99680 1.21335 0.99311 1.25068 1.13427 0.92712 1.25671 0.99078 0.97014 0.94851 1.69979 1.19751 1.40098 1.21308 0.85773 0.78205 0.79868 0.78597 1.20176 1.20810 1.19754 1.88260 1.65828 1.48093 1.26453 1.21996 0.95953 0.98305 0.99654 0.94056 0.87909 0.95894 0.90977 0.92931 0.90365 0.93938 0.91671 0.89034 0.91590 0.89493 0.90387 0.92688 0.92797 0.93202 0.93310 0.90741 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 10.82 113.37 1.23 2.54 16 2 O -0.41 -16.39 10.35 -148.98 -1.54 -17.93 16 3 C 0.07 2.73 2.47 30.59 0.08 2.81 16 4 H 0.09 4.48 5.72 -2.39 -0.01 4.47 16 5 C -0.12 -4.26 5.54 30.60 0.17 -4.09 16 6 C -0.11 -3.69 5.78 30.60 0.18 -3.52 16 7 C -0.10 -3.19 4.94 30.59 0.15 -3.04 16 8 C 0.10 3.97 0.68 -10.77 -0.01 3.96 16 9 C -0.13 -4.34 4.91 30.68 0.15 -4.18 16 10 C -0.12 -3.99 5.72 30.72 0.18 -3.82 16 11 C -0.14 -5.98 5.36 30.69 0.16 -5.81 16 12 C 0.22 11.34 2.17 29.88 0.06 11.40 16 13 H -0.01 -0.81 6.35 -2.39 -0.02 -0.82 16 14 C -0.55 -31.07 8.79 25.60 0.23 -30.84 16 15 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 16 C 0.04 2.07 5.40 84.65 0.46 2.52 16 17 N -0.88 -49.02 11.29 21.45 0.24 -48.78 16 18 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 O -0.37 -18.04 7.95 -148.98 -1.18 -19.23 16 23 C -0.12 -4.75 3.69 30.59 0.11 -4.64 16 24 H 0.04 1.34 7.87 -2.39 -0.02 1.32 16 25 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 26 H 0.02 0.89 8.08 -2.39 -0.02 0.87 16 27 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.05 1.80 7.87 -2.39 -0.02 1.78 16 29 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.04 1.84 7.69 -2.39 -0.02 1.82 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 33 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.05 1.90 6.62 -2.39 -0.02 1.89 16 37 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 40 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.05 2.00 4.98 -2.39 -0.01 1.98 16 Total: -1.00 -61.46 307.52 3.67 -57.79 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.98 Total: 19.22 kcal Atomic # 6 Polarization: -39.85 SS G_CDS: 3.14 Total: -36.71 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.24 Total: -48.78 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -2.73 Total: -37.16 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -61.46 3.67 -57.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309488129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.653 kcal (2) G-P(sol) polarization free energy of solvation -61.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds