Wall clock time and date at job start Mon Mar 30 2020 06:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00169 * 2 1 4 4 C 1.52997 * 109.46903 * 304.06369 * 3 2 1 5 5 H 1.09003 * 110.55277 * 58.57415 * 4 3 2 6 6 C 1.54985 * 110.62056 * 295.52222 * 4 3 2 7 7 C 1.54814 * 102.09358 * 204.47834 * 6 4 3 8 8 C 1.54096 * 104.18877 * 20.87770 * 7 6 4 9 9 H 1.08994 * 110.00855 * 242.53689 * 8 7 6 10 10 C 1.50705 * 109.87706 * 121.45241 * 8 7 6 11 11 H 1.07996 * 120.00177 * 0.71802 * 10 8 7 12 12 C 1.37876 * 119.99704 * 180.71641 * 10 8 7 13 13 N 1.31512 * 120.00089 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 119.99639 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47548 * 60.00028 * 14 12 10 16 16 H 1.48502 * 109.47296 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47235 * 299.99952 * 14 12 10 18 18 O 1.43746 * 107.29155 * 2.03337 * 8 7 6 19 19 C 1.52996 * 109.46672 * 64.06377 * 3 2 1 20 20 C 1.52997 * 109.47463 * 60.00335 * 19 3 2 21 21 C 1.52995 * 109.47435 * 59.99781 * 20 19 3 22 22 C 1.53006 * 109.47049 * 300.00153 * 21 20 19 23 23 C 1.52995 * 109.47285 * 184.06020 * 3 2 1 24 24 H 1.09004 * 109.47618 * 305.38267 * 1 2 3 25 25 H 1.09003 * 109.47461 * 65.38306 * 1 2 3 26 26 H 1.09000 * 109.47534 * 185.38381 * 1 2 3 27 27 H 1.09007 * 110.90967 * 322.67694 * 6 4 3 28 28 H 1.08997 * 110.90981 * 86.27791 * 6 4 3 29 29 H 1.09005 * 110.48630 * 262.20046 * 7 6 4 30 30 H 1.09006 * 110.60176 * 139.61402 * 7 6 4 31 31 H 0.97000 * 119.99700 * 179.97438 * 13 12 10 32 32 H 1.09006 * 109.47334 * 299.99808 * 19 3 2 33 33 H 1.09004 * 109.46805 * 180.02562 * 19 3 2 34 34 H 1.09003 * 109.46990 * 299.99237 * 20 19 3 35 35 H 1.09003 * 109.47602 * 179.97438 * 20 19 3 36 36 H 1.08993 * 109.47475 * 59.99765 * 21 20 19 37 37 H 1.09002 * 109.47727 * 180.02562 * 21 20 19 38 38 H 1.08994 * 109.47558 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.46983 * 300.00537 * 22 21 20 40 40 H 1.09006 * 109.46597 * 60.00170 * 23 3 2 41 41 H 1.08993 * 109.47475 * 179.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4795 2.0999 -1.1950 5 1 0.3929 2.1742 -1.1530 6 6 1.9346 1.4514 -2.5270 7 6 1.8852 2.6505 -3.5051 8 6 1.9508 3.8880 -2.5891 9 1 1.0390 4.4763 -2.6912 10 6 3.1471 4.7302 -2.9507 11 1 3.7952 4.4284 -3.7601 12 6 3.4140 5.8861 -2.2481 13 7 2.6250 6.2534 -1.2621 14 14 4.8964 6.9304 -2.6967 15 1 4.7728 7.3867 -4.1045 16 1 4.9605 8.1110 -1.7981 17 1 6.1342 6.1242 -2.5447 18 8 2.0776 3.4134 -1.2382 19 6 1.6413 2.0279 1.2972 20 6 2.1719 1.2334 2.4922 21 6 3.6938 1.1140 2.3901 22 6 4.0628 0.3915 1.0928 23 6 3.5321 1.1861 -0.1021 24 1 -0.3634 0.5951 0.8379 25 1 -0.3634 0.4281 -0.9343 26 1 -0.3634 -1.0231 0.0964 27 1 2.9484 1.0598 -2.4427 28 1 1.2413 0.6690 -2.8356 29 1 0.9533 2.6434 -4.0706 30 1 2.7404 2.6300 -4.1806 31 1 2.8131 7.0664 -0.7676 32 1 0.5570 2.1129 1.3700 33 1 2.0843 3.0238 1.2970 34 1 1.7285 0.2376 2.4922 35 1 1.9095 1.7483 3.4164 36 1 4.1372 2.1097 2.3900 37 1 4.0719 0.5476 3.2412 38 1 5.1470 0.3068 1.0197 39 1 3.6193 -0.6043 1.0928 40 1 3.7949 0.6713 -1.0263 41 1 3.9754 2.1818 -0.1026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000320100232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:02 Heat of formation + Delta-G solvation = -108.812557 kcal Electronic energy + Delta-G solvation = -20828.126798 eV Core-core repulsion = 17900.356703 eV Total energy + Delta-G solvation = -2927.770095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.89039 -37.33091 -35.56913 -32.63210 -31.02355 -30.50635 -30.21770 -27.62634 -26.24389 -24.50843 -22.73186 -21.78286 -20.32497 -19.69726 -18.93855 -16.84989 -15.89040 -15.35655 -15.16218 -15.08053 -14.53452 -14.27629 -13.66651 -13.34002 -13.12182 -12.98053 -12.64289 -12.32086 -12.00958 -11.78916 -11.68849 -11.48965 -11.01377 -10.90403 -10.64154 -10.59638 -10.58321 -10.41340 -10.28566 -10.10115 -9.99819 -9.73830 -9.31115 -9.12797 -8.88366 -8.54573 -7.93773 -5.99166 -4.11650 3.32423 3.37113 3.39506 4.12340 4.43229 4.89746 5.02711 5.14688 5.20861 5.46307 5.49825 5.50732 5.60459 5.60872 5.74216 5.75357 5.82652 5.87300 5.91689 5.99207 6.02752 6.10435 6.24782 6.32569 6.37158 6.43018 6.46975 6.59044 6.63265 6.66723 6.72514 6.76446 6.85058 6.88530 7.01818 7.54025 7.65158 7.89552 8.27082 8.56063 9.01555 9.58640 11.08038 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.023353 B = 0.007631 C = 0.006641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.718222 B = 3668.425949 C = 4214.961137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.374 6.374 3 C 0.134 3.866 4 C 0.044 3.956 5 H 0.047 0.953 6 C -0.143 4.143 7 C -0.147 4.147 8 C 0.205 3.795 9 H 0.023 0.977 10 C -0.532 4.532 11 H 0.061 0.939 12 C 0.078 3.922 13 N -0.863 5.863 14 Si 0.889 3.111 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.275 1.275 18 O -0.338 6.338 19 C -0.138 4.138 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.100 4.100 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.261 0.739 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.100 -11.045 4.646 12.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.293 6.293 3 C 0.095 3.905 4 C -0.015 4.015 5 H 0.064 0.936 6 C -0.181 4.181 7 C -0.185 4.185 8 C 0.150 3.850 9 H 0.041 0.959 10 C -0.569 4.569 11 H 0.079 0.921 12 C -0.128 4.128 13 N -0.499 5.499 14 Si 0.716 3.284 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.201 1.201 18 O -0.258 6.258 19 C -0.175 4.175 20 C -0.149 4.149 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.137 4.137 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.929 -10.943 4.959 12.168 hybrid contribution 0.313 0.771 -0.437 0.940 sum -1.616 -10.173 4.521 11.249 Atomic orbital electron populations 1.22712 0.82567 1.01664 1.00272 1.87909 1.18673 1.27797 1.94927 1.21310 0.94016 0.81884 0.93303 1.23398 0.96186 0.88003 0.93919 0.93566 1.23099 1.01505 0.97576 0.95898 1.23062 1.00413 0.96147 0.98885 1.20261 0.97102 0.89595 0.78069 0.95921 1.21140 1.12164 1.06294 1.17346 0.92092 1.25061 0.96109 0.97163 0.94420 1.70026 1.36815 1.23294 1.19784 0.86728 0.83515 0.79798 0.78327 1.20180 1.21213 1.20093 1.89255 1.78687 1.26198 1.31623 1.22018 1.00560 1.00805 0.94155 1.21427 0.95862 1.00170 0.97459 1.21517 0.96075 1.00668 0.97275 1.21479 0.99664 0.99437 0.94631 1.21545 0.92071 1.02115 0.97930 0.93953 0.94047 0.90472 0.90763 0.92582 0.93443 0.91534 0.92969 0.92474 0.89399 0.92098 0.92749 0.91954 0.92809 0.92617 0.91783 0.91456 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.15 101.05 1.03 1.36 16 2 O -0.37 -6.02 8.79 -35.23 -0.31 -6.33 16 3 C 0.13 2.36 0.26 -90.63 -0.02 2.33 16 4 C 0.04 0.89 2.08 -25.68 -0.05 0.84 16 5 H 0.05 0.93 6.61 -51.93 -0.34 0.58 16 6 C -0.14 -2.73 6.27 -24.73 -0.16 -2.88 16 7 C -0.15 -3.12 6.63 -25.20 -0.17 -3.29 16 8 C 0.21 5.31 3.26 -27.31 -0.09 5.22 16 9 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 10 C -0.53 -14.89 8.78 -34.44 -0.30 -15.20 16 11 H 0.06 1.66 7.33 -52.49 -0.38 1.28 16 12 C 0.08 2.21 5.41 -17.82 -0.10 2.11 16 13 N -0.86 -25.44 12.92 55.43 0.72 -24.73 16 14 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 18 O -0.34 -8.55 9.19 -35.23 -0.32 -8.87 16 19 C -0.14 -2.36 4.36 -26.74 -0.12 -2.47 16 20 C -0.11 -1.61 5.78 -26.74 -0.15 -1.77 16 21 C -0.12 -1.67 5.92 -26.73 -0.16 -1.82 16 22 C -0.11 -1.69 5.78 -26.73 -0.15 -1.85 16 23 C -0.10 -1.75 4.45 -26.73 -0.12 -1.87 16 24 H 0.04 0.55 6.28 -51.93 -0.33 0.22 16 25 H 0.04 0.57 6.64 -51.93 -0.34 0.22 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.41 5.69 -51.93 -0.30 1.11 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.40 7.40 -51.93 -0.38 1.02 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.06 0.94 6.51 -51.93 -0.34 0.60 16 33 H 0.09 1.76 7.78 -51.93 -0.40 1.35 16 34 H 0.06 0.85 7.68 -51.93 -0.40 0.45 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.93 7.68 -51.93 -0.40 0.53 16 40 H 0.07 1.18 6.03 -51.93 -0.31 0.86 16 41 H 0.09 1.85 7.70 -51.93 -0.40 1.45 16 LS Contribution 307.66 15.07 4.64 4.64 Total: -1.00 -29.52 307.66 -7.71 -37.24 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.85 Total: 0.99 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -0.56 Total: -19.29 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.72 Total: -24.73 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.63 Total: -15.20 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.52 -7.71 -37.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320100232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.575 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds