Wall clock time and date at job start Mon Mar 30 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.48721 * 2 1 4 4 C 1.53108 * 109.48256 * 239.97062 * 2 1 3 5 5 C 1.53116 * 109.20882 * 297.53853 * 4 2 1 6 6 C 1.53000 * 109.49360 * 183.24630 * 5 4 2 7 7 C 1.53184 * 109.19721 * 182.47910 * 6 5 4 8 8 C 1.53181 * 109.03325 * 56.86358 * 7 6 5 9 9 C 1.53101 * 109.14984 * 302.95266 * 8 7 6 10 10 H 1.08994 * 109.48650 * 297.69879 * 9 8 7 11 11 C 1.50705 * 109.47835 * 177.66201 * 9 8 7 12 12 H 1.07999 * 120.00446 * 0.06670 * 11 9 8 13 13 C 1.37883 * 119.99494 * 180.02562 * 11 9 8 14 14 N 1.31510 * 119.99956 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99463 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47488 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46906 * 120.00253 * 15 13 11 18 18 H 1.48496 * 109.47228 * 239.99709 * 15 13 11 19 19 O 1.42814 * 109.51743 * 63.06470 * 5 4 2 20 20 C 1.53118 * 109.15108 * 303.18972 * 5 4 2 21 21 C 1.53104 * 109.21315 * 56.78067 * 20 5 4 22 22 H 1.08998 * 109.47867 * 62.51400 * 21 20 5 23 23 C 1.53000 * 109.47903 * 182.54793 * 21 20 5 24 24 O 1.42896 * 109.42057 * 302.53460 * 21 20 5 25 25 H 1.09004 * 109.47259 * 188.86264 * 1 2 3 26 26 H 1.09002 * 109.47219 * 308.86630 * 1 2 3 27 27 H 1.09008 * 109.47480 * 68.86140 * 1 2 3 28 28 H 1.09002 * 109.52387 * 57.47794 * 4 2 1 29 29 H 1.09001 * 109.52284 * 177.60413 * 4 2 1 30 30 H 1.08999 * 109.51631 * 302.39726 * 6 5 4 31 31 H 1.09006 * 109.51683 * 62.56499 * 6 5 4 32 32 H 1.08999 * 109.54707 * 296.99730 * 7 6 5 33 33 H 1.09002 * 109.54701 * 176.72635 * 7 6 5 34 34 H 1.09002 * 109.52600 * 183.05219 * 8 7 6 35 35 H 1.08996 * 109.52455 * 62.85018 * 8 7 6 36 36 H 0.97005 * 119.99223 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.46321 * 296.88130 * 20 5 4 38 38 H 1.08994 * 109.57607 * 176.75204 * 20 5 4 39 39 H 1.08999 * 109.47192 * 179.97438 * 23 21 20 40 40 H 1.08994 * 109.47415 * 299.94884 * 23 21 20 41 41 H 1.09003 * 109.47223 * 59.94723 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2497 5 6 1.5784 -2.1816 -1.2123 6 6 2.1525 -2.9301 -2.4168 7 6 1.6361 -4.3722 -2.4067 8 6 0.1044 -4.3543 -2.4070 9 6 -0.3888 -3.5533 -1.1991 10 1 -0.0627 -4.0419 -0.2811 11 6 -1.8940 -3.4823 -1.2238 12 1 -2.4442 -3.9613 -2.0201 13 6 -2.5686 -2.8066 -0.2291 14 7 -1.8986 -2.2244 0.7413 15 14 -4.4342 -2.7180 -0.2601 16 1 -4.9449 -3.4491 -1.4475 17 1 -4.9797 -3.3376 0.9744 18 1 -4.8613 -1.2976 -0.3313 19 8 0.1517 -2.2314 -1.2533 20 6 2.0757 -2.8330 0.0811 21 6 1.5643 -2.0287 1.2793 22 1 0.4748 -2.0550 1.2964 23 6 2.1100 -2.6373 2.5727 24 8 2.0066 -0.6746 1.1662 25 1 -0.3634 -1.0154 0.1583 26 1 -0.3634 0.6449 0.8002 27 1 -0.3634 0.3706 -0.9586 28 1 1.6414 -0.2364 -2.1400 29 1 3.1297 -0.6857 -1.2721 30 1 1.8371 -2.4368 -3.3362 31 1 3.2411 -2.9326 -2.3589 32 1 1.9946 -4.8817 -1.5122 33 1 1.9948 -4.8943 -3.2938 34 1 -0.2718 -5.3755 -2.3451 35 1 -0.2542 -3.8879 -3.3245 36 1 -2.3733 -1.7493 1.4412 37 1 3.1656 -2.8425 0.0872 38 1 1.7020 -3.8551 0.1423 39 1 1.7463 -2.0643 3.4256 40 1 1.7727 -3.6701 2.6588 41 1 3.1996 -2.6113 2.5550 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380980222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:50 Heat of formation + Delta-G solvation = -105.770753 kcal Electronic energy + Delta-G solvation = -21656.542256 eV Core-core repulsion = 18728.904064 eV Total energy + Delta-G solvation = -2927.638192 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.95029 -37.10953 -33.32932 -32.83125 -32.26661 -31.60465 -29.05691 -27.34724 -26.03332 -24.95546 -22.33997 -21.98087 -20.90266 -19.06110 -18.08572 -16.71964 -15.73205 -15.38530 -14.92110 -14.55134 -14.27462 -13.80955 -13.60551 -13.41101 -12.78729 -12.42517 -12.29527 -12.08800 -11.81516 -11.58911 -11.36111 -11.09599 -11.02098 -10.88036 -10.77701 -10.59577 -10.46786 -10.35241 -10.14313 -10.06726 -10.01187 -9.45328 -9.23033 -8.88486 -8.45024 -8.26746 -7.74028 -6.08084 -4.19456 3.26696 3.36047 3.38839 4.36699 4.54725 4.86029 5.27985 5.33432 5.50012 5.59183 5.67847 5.70573 5.78201 5.88438 6.01568 6.07145 6.16628 6.18827 6.22443 6.29871 6.30738 6.36568 6.49981 6.53529 6.54087 6.58982 6.73189 6.82466 6.85905 6.91447 6.93886 6.98973 7.09182 7.19470 7.49844 7.83525 8.13562 8.18783 8.43376 8.74365 9.08769 9.51892 10.96697 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.019175 B = 0.010841 C = 0.008713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.913265 B = 2582.160661 C = 3212.759379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.097 3.903 3 H 0.077 0.923 4 C -0.131 4.131 5 C 0.111 3.889 6 C -0.136 4.136 7 C -0.121 4.121 8 C -0.144 4.144 9 C 0.210 3.790 10 H 0.020 0.980 11 C -0.518 4.518 12 H 0.063 0.937 13 C 0.078 3.922 14 N -0.862 5.862 15 Si 0.893 3.107 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.283 1.283 19 O -0.338 6.338 20 C -0.162 4.162 21 C 0.068 3.932 22 H 0.118 0.882 23 C -0.138 4.138 24 O -0.390 6.390 25 H 0.170 0.830 26 H 0.027 0.973 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.263 0.737 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.299 -0.173 -1.214 7.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C 0.039 3.961 3 H 0.095 0.905 4 C -0.168 4.168 5 C 0.070 3.930 6 C -0.174 4.174 7 C -0.158 4.158 8 C -0.182 4.182 9 C 0.155 3.845 10 H 0.038 0.962 11 C -0.555 4.555 12 H 0.081 0.919 13 C -0.126 4.126 14 N -0.499 5.499 15 Si 0.721 3.279 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.209 1.209 19 O -0.257 6.257 20 C -0.200 4.200 21 C 0.011 3.989 22 H 0.136 0.864 23 C -0.195 4.195 24 O -0.310 6.310 25 H 0.187 0.813 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.275 0.170 -0.934 7.336 hybrid contribution -0.789 -0.125 -0.357 0.875 sum 6.485 0.045 -1.291 6.613 Atomic orbital electron populations 1.23177 0.93699 1.10879 0.99274 1.21978 0.95909 0.93926 0.84274 0.90509 1.22150 0.99562 0.95754 0.99368 1.21131 0.86455 0.93382 0.92004 1.22105 0.99153 0.96665 0.99497 1.21639 0.97716 0.96022 1.00464 1.22251 0.93235 1.00763 1.01936 1.19787 0.92976 0.80736 0.91038 0.96240 1.21086 0.89635 1.34962 1.09795 0.91901 1.24962 0.98289 0.94338 0.94988 1.69562 1.34976 1.33447 1.11960 0.86529 0.85592 0.77859 0.77904 1.19857 1.20989 1.20898 1.88442 1.13627 1.30346 1.93308 1.22667 0.99697 1.00856 0.96768 1.22372 1.02658 0.80911 0.92931 0.86409 1.21709 1.00347 1.00242 0.97203 1.87773 1.74108 1.25409 1.43702 0.81281 0.95379 0.93821 0.91193 0.91812 0.91964 0.92804 0.92537 0.93379 0.92674 0.92625 0.92738 0.92778 0.90733 0.92555 0.91729 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.76 8.10 37.15 0.30 -4.45 16 2 C 0.10 1.91 3.91 -26.68 -0.10 1.80 16 3 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 4 C -0.13 -2.41 4.77 -26.62 -0.13 -2.53 16 5 C 0.11 2.19 0.68 -90.50 -0.06 2.13 16 6 C -0.14 -2.38 4.92 -26.64 -0.13 -2.51 16 7 C -0.12 -2.11 5.72 -26.54 -0.15 -2.26 16 8 C -0.14 -2.94 5.36 -26.59 -0.14 -3.09 16 9 C 0.21 5.01 2.18 -27.83 -0.06 4.95 16 10 H 0.02 0.51 6.30 -51.93 -0.33 0.18 16 11 C -0.52 -13.59 8.79 -34.44 -0.30 -13.89 16 12 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 13 C 0.08 2.05 5.40 -17.82 -0.10 1.95 16 14 N -0.86 -22.58 9.25 55.43 0.51 -22.07 16 15 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 O -0.34 -7.90 5.66 -35.23 -0.20 -8.10 16 20 C -0.16 -3.11 3.53 -26.62 -0.09 -3.21 16 21 C 0.07 1.39 2.87 -26.68 -0.08 1.31 16 22 H 0.12 2.78 4.95 -51.93 -0.26 2.52 16 23 C -0.14 -2.38 9.56 37.16 0.36 -2.02 16 24 O -0.39 -8.09 10.23 -35.23 -0.36 -8.45 16 25 H 0.17 4.10 1.00 -51.93 -0.05 4.05 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.96 8.13 -51.92 -0.42 0.54 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.96 6.72 -51.93 -0.35 0.62 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.47 5.03 -51.93 -0.26 1.21 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 295.83 15.07 4.46 4.46 Total: -1.00 -26.53 295.83 -8.01 -34.54 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.71 Total: 5.97 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -0.69 Total: -21.82 kcal Atomic # 7 Polarization: -22.58 SS G_CDS: 0.51 Total: -22.07 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.56 Total: -16.55 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.53 -8.01 -34.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380980222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.230 kcal (2) G-P(sol) polarization free energy of solvation -26.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds