Wall clock time and date at job start Mon Mar 30 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.48721 * 2 1 4 4 C 1.53108 * 109.48256 * 239.97062 * 2 1 3 5 5 C 1.53116 * 109.20882 * 297.53853 * 4 2 1 6 6 C 1.53000 * 109.49360 * 183.24630 * 5 4 2 7 7 C 1.53184 * 109.19721 * 182.47910 * 6 5 4 8 8 C 1.53181 * 109.03325 * 56.86358 * 7 6 5 9 9 C 1.53101 * 109.14984 * 302.95266 * 8 7 6 10 10 H 1.08994 * 109.48650 * 297.69879 * 9 8 7 11 11 C 1.50705 * 109.47835 * 177.66201 * 9 8 7 12 12 H 1.07999 * 120.00446 * 0.06670 * 11 9 8 13 13 C 1.37883 * 119.99494 * 180.02562 * 11 9 8 14 14 N 1.31510 * 119.99956 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99463 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47488 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46906 * 120.00253 * 15 13 11 18 18 H 1.48496 * 109.47228 * 239.99709 * 15 13 11 19 19 O 1.42814 * 109.51743 * 63.06470 * 5 4 2 20 20 C 1.53118 * 109.15108 * 303.18972 * 5 4 2 21 21 C 1.53104 * 109.21315 * 56.78067 * 20 5 4 22 22 H 1.08998 * 109.47867 * 62.51400 * 21 20 5 23 23 C 1.53000 * 109.47903 * 182.54793 * 21 20 5 24 24 O 1.42896 * 109.42057 * 302.53460 * 21 20 5 25 25 H 1.09004 * 109.47259 * 188.86264 * 1 2 3 26 26 H 1.09002 * 109.47219 * 308.86630 * 1 2 3 27 27 H 1.09008 * 109.47480 * 68.86140 * 1 2 3 28 28 H 1.09002 * 109.52387 * 57.47794 * 4 2 1 29 29 H 1.09001 * 109.52284 * 177.60413 * 4 2 1 30 30 H 1.08999 * 109.51631 * 302.39726 * 6 5 4 31 31 H 1.09006 * 109.51683 * 62.56499 * 6 5 4 32 32 H 1.08999 * 109.54707 * 296.99730 * 7 6 5 33 33 H 1.09002 * 109.54701 * 176.72635 * 7 6 5 34 34 H 1.09002 * 109.52600 * 183.05219 * 8 7 6 35 35 H 1.08996 * 109.52455 * 62.85018 * 8 7 6 36 36 H 0.97005 * 119.99223 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.46321 * 296.88130 * 20 5 4 38 38 H 1.08994 * 109.57607 * 176.75204 * 20 5 4 39 39 H 1.08999 * 109.47192 * 179.97438 * 23 21 20 40 40 H 1.08994 * 109.47415 * 299.94884 * 23 21 20 41 41 H 1.09003 * 109.47223 * 59.94723 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2497 5 6 1.5784 -2.1816 -1.2123 6 6 2.1525 -2.9301 -2.4168 7 6 1.6361 -4.3722 -2.4067 8 6 0.1044 -4.3543 -2.4070 9 6 -0.3888 -3.5533 -1.1991 10 1 -0.0627 -4.0419 -0.2811 11 6 -1.8940 -3.4823 -1.2238 12 1 -2.4442 -3.9613 -2.0201 13 6 -2.5686 -2.8066 -0.2291 14 7 -1.8986 -2.2244 0.7413 15 14 -4.4342 -2.7180 -0.2601 16 1 -4.9449 -3.4491 -1.4475 17 1 -4.9797 -3.3376 0.9744 18 1 -4.8613 -1.2976 -0.3313 19 8 0.1517 -2.2314 -1.2533 20 6 2.0757 -2.8330 0.0811 21 6 1.5643 -2.0287 1.2793 22 1 0.4748 -2.0550 1.2964 23 6 2.1100 -2.6373 2.5727 24 8 2.0066 -0.6746 1.1662 25 1 -0.3634 -1.0154 0.1583 26 1 -0.3634 0.6449 0.8002 27 1 -0.3634 0.3706 -0.9586 28 1 1.6414 -0.2364 -2.1400 29 1 3.1297 -0.6857 -1.2721 30 1 1.8371 -2.4368 -3.3362 31 1 3.2411 -2.9326 -2.3589 32 1 1.9946 -4.8817 -1.5122 33 1 1.9948 -4.8943 -3.2938 34 1 -0.2718 -5.3755 -2.3451 35 1 -0.2542 -3.8879 -3.3245 36 1 -2.3733 -1.7493 1.4412 37 1 3.1656 -2.8425 0.0872 38 1 1.7020 -3.8551 0.1423 39 1 1.7463 -2.0643 3.4256 40 1 1.7727 -3.6701 2.6588 41 1 3.1996 -2.6113 2.5550 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380980222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:50 Heat of formation + Delta-G solvation = -119.612263 kcal Electronic energy + Delta-G solvation = -21657.142469 eV Core-core repulsion = 18728.904064 eV Total energy + Delta-G solvation = -2928.238405 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.51555 -38.71823 -35.13518 -34.37631 -33.83134 -33.33152 -30.69227 -29.03780 -27.52946 -26.68503 -23.95705 -23.60037 -22.48811 -20.60729 -19.67502 -18.62096 -17.37376 -16.93793 -16.62757 -16.35429 -15.81103 -15.36638 -15.16465 -14.96477 -14.46215 -14.05002 -13.94770 -13.60906 -13.31014 -13.03402 -12.89718 -12.80645 -12.68755 -12.51958 -12.43631 -12.30499 -12.13452 -12.04090 -11.77925 -11.62939 -11.61135 -11.09175 -10.90101 -10.67737 -10.11952 -10.06805 -9.39076 -8.04666 -6.22834 1.41548 1.45998 1.54517 2.44756 3.00438 3.09042 3.60966 3.85894 4.02325 4.06339 4.19084 4.24757 4.32950 4.43175 4.51836 4.59880 4.66705 4.71577 4.77358 4.81440 4.86695 4.89310 4.96777 5.04706 5.06493 5.13281 5.21406 5.23027 5.26788 5.32057 5.37023 5.41216 5.47117 5.58866 5.67762 5.89669 6.28866 6.55751 6.62833 6.77413 7.33495 7.51604 8.96693 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.019175 B = 0.010841 C = 0.008713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.913265 B = 2582.160661 C = 3212.759379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.094 3.906 3 H 0.100 0.900 4 C -0.127 4.127 5 C 0.097 3.903 6 C -0.132 4.132 7 C -0.115 4.115 8 C -0.140 4.140 9 C 0.214 3.786 10 H -0.004 1.004 11 C -0.545 4.545 12 H 0.054 0.946 13 C 0.039 3.961 14 N -0.871 5.871 15 Si 0.947 3.053 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.286 1.286 19 O -0.359 6.359 20 C -0.154 4.154 21 C 0.061 3.939 22 H 0.082 0.918 23 C -0.133 4.133 24 O -0.395 6.395 25 H 0.157 0.843 26 H 0.018 0.982 27 H 0.033 0.967 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.260 0.740 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.044 -0.323 -1.769 9.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C 0.037 3.963 3 H 0.117 0.883 4 C -0.164 4.164 5 C 0.057 3.943 6 C -0.170 4.170 7 C -0.152 4.152 8 C -0.178 4.178 9 C 0.158 3.842 10 H 0.013 0.987 11 C -0.582 4.582 12 H 0.072 0.928 13 C -0.164 4.164 14 N -0.508 5.508 15 Si 0.774 3.226 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.212 1.212 19 O -0.278 6.278 20 C -0.192 4.192 21 C 0.004 3.996 22 H 0.100 0.900 23 C -0.190 4.190 24 O -0.315 6.315 25 H 0.174 0.826 26 H 0.037 0.963 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.027 0.015 -1.491 9.149 hybrid contribution -1.346 -0.048 -0.163 1.357 sum 7.680 -0.033 -1.654 7.857 Atomic orbital electron populations 1.23169 0.96201 1.09785 0.98256 1.22069 0.93982 0.95381 0.84904 0.88256 1.22158 1.01124 0.94613 0.98545 1.21458 0.84695 0.94795 0.93353 1.22076 1.00762 0.96008 0.98136 1.21601 0.95009 0.96636 1.01976 1.22143 0.95878 0.99998 0.99809 1.19546 0.91880 0.81386 0.91386 0.98664 1.21378 0.91549 1.35467 1.09823 0.92793 1.25576 1.01634 0.94253 0.94926 1.69715 1.35760 1.33372 1.11979 0.85697 0.81639 0.77410 0.77894 1.19707 1.20488 1.21218 1.88363 1.16205 1.29734 1.93544 1.22581 1.00769 0.99858 0.95999 1.22367 1.00964 0.81262 0.95007 0.89972 1.21679 1.01495 1.00239 0.95604 1.87767 1.73836 1.25654 1.44245 0.82553 0.96262 0.94824 0.90955 0.89017 0.92051 0.89853 0.92156 0.90611 0.92571 0.93524 0.93087 0.90557 0.91778 0.92640 0.91178 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -9.77 8.10 71.98 0.58 -9.19 16 2 C 0.09 3.57 3.91 30.63 0.12 3.69 16 3 H 0.10 3.29 8.14 -2.39 -0.02 3.28 16 4 C -0.13 -4.36 4.77 30.67 0.15 -4.21 16 5 C 0.10 3.65 0.68 -10.72 -0.01 3.65 16 6 C -0.13 -4.20 4.92 30.66 0.15 -4.05 16 7 C -0.11 -3.70 5.72 30.72 0.18 -3.53 16 8 C -0.14 -5.66 5.36 30.69 0.16 -5.49 16 9 C 0.21 10.33 2.18 29.88 0.07 10.40 16 10 H 0.00 -0.22 6.30 -2.39 -0.02 -0.23 16 11 C -0.54 -29.27 8.79 25.60 0.23 -29.05 16 12 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 13 C 0.04 2.07 5.40 84.66 0.46 2.53 16 14 N -0.87 -46.82 9.25 21.45 0.20 -46.63 16 15 Si 0.95 42.81 29.54 68.60 2.03 44.83 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 19 O -0.36 -16.81 5.66 -148.98 -0.84 -17.65 16 20 C -0.15 -5.65 3.53 30.67 0.11 -5.54 16 21 C 0.06 2.44 2.87 30.63 0.09 2.53 16 22 H 0.08 3.94 4.95 -2.39 -0.01 3.93 16 23 C -0.13 -4.40 9.56 71.98 0.69 -3.71 16 24 O -0.39 -15.78 10.23 -148.98 -1.52 -17.31 16 25 H 0.16 7.72 1.00 -2.38 0.00 7.72 16 26 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.03 1.50 8.13 -2.38 -0.02 1.48 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.06 1.91 6.72 -2.39 -0.02 1.89 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.26 13.56 8.31 -92.70 -0.77 12.79 16 37 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.06 2.47 5.03 -2.39 -0.01 2.46 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 40 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -57.26 295.83 3.82 -53.44 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 1.00 Total: 25.29 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 2.96 Total: -41.98 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.20 Total: -46.63 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -2.37 Total: -34.96 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -57.26 3.82 -53.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380980222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.175 kcal (2) G-P(sol) polarization free energy of solvation -57.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds