Wall clock time and date at job start Mon Mar 30 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.48469 * 2 1 4 4 C 1.53115 * 109.48554 * 239.95626 * 2 1 3 5 5 C 1.53107 * 109.15135 * 182.47629 * 4 2 1 6 6 C 1.53027 * 109.46154 * 297.12128 * 5 4 2 7 7 C 1.53186 * 109.18039 * 182.37635 * 6 5 4 8 8 C 1.53180 * 109.01578 * 56.89431 * 7 6 5 9 9 C 1.53085 * 109.17116 * 302.95580 * 8 7 6 10 10 H 1.09004 * 109.47972 * 297.66758 * 9 8 7 11 11 C 1.50696 * 109.48380 * 177.63120 * 9 8 7 12 12 H 1.07997 * 119.99995 * 0.05768 * 11 9 8 13 13 C 1.37877 * 120.00141 * 180.02562 * 11 9 8 14 14 N 1.31516 * 120.00060 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00154 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47264 * 59.99725 * 15 13 11 17 17 H 1.48496 * 109.47456 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47221 * 299.99971 * 15 13 11 19 19 O 1.42803 * 109.57491 * 176.93211 * 5 4 2 20 20 C 1.53107 * 109.15281 * 56.92923 * 5 4 2 21 21 C 1.53117 * 109.15351 * 303.09359 * 20 5 4 22 22 H 1.09000 * 109.47805 * 297.52439 * 21 20 5 23 23 C 1.52998 * 109.49058 * 177.50100 * 21 20 5 24 24 O 1.42890 * 109.41259 * 57.50649 * 21 20 5 25 25 H 1.09002 * 109.47153 * 299.96742 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.96915 * 1 2 3 28 28 H 1.08997 * 109.52428 * 302.38272 * 4 2 1 29 29 H 1.09006 * 109.52149 * 62.57540 * 4 2 1 30 30 H 1.09002 * 109.51997 * 302.29101 * 6 5 4 31 31 H 1.09001 * 109.51646 * 62.46963 * 6 5 4 32 32 H 1.08998 * 109.54953 * 297.03566 * 7 6 5 33 33 H 1.09000 * 109.54492 * 176.75596 * 7 6 5 34 34 H 1.08994 * 109.52459 * 183.04684 * 8 7 6 35 35 H 1.09006 * 109.51892 * 62.86406 * 8 7 6 36 36 H 0.96997 * 120.00231 * 179.97438 * 14 13 11 37 37 H 1.08995 * 109.52913 * 183.18604 * 20 5 4 38 38 H 1.09003 * 109.52368 * 62.98925 * 20 5 4 39 39 H 1.09005 * 109.46924 * 300.04587 * 23 21 20 40 40 H 1.08991 * 109.47397 * 60.04997 * 23 21 20 41 41 H 1.08995 * 109.46966 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0407 -0.7227 -1.2495 5 6 3.5705 -0.7725 -1.2109 6 6 4.1282 0.6519 -1.2504 7 6 5.6588 0.5928 -1.2714 8 6 6.1094 -0.2434 -2.4732 9 6 5.4766 -1.6344 -2.3834 10 1 5.8268 -2.1356 -1.4810 11 6 5.8686 -2.4439 -3.5925 12 1 6.5061 -2.0106 -4.3489 13 6 5.4140 -3.7380 -3.7327 14 7 4.6378 -4.2658 -2.8115 15 14 5.9006 -4.7417 -5.2311 16 1 7.3790 -4.8735 -5.2799 17 1 5.2865 -6.0909 -5.1439 18 1 5.4237 -4.0588 -6.4606 19 8 4.0538 -1.5070 -2.3361 20 6 4.0182 -1.4604 0.0816 21 6 3.4307 -0.7096 1.2798 22 1 3.8195 0.3085 1.2969 23 6 3.8219 -1.4269 2.5734 24 8 2.0068 -0.6742 1.1663 25 1 -0.3633 0.5133 0.8903 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5143 -0.8897 28 1 1.6436 -1.7375 -1.2713 29 1 1.7161 -0.1842 -2.1400 30 1 3.7709 1.1583 -2.1471 31 1 3.7969 1.1973 -0.3666 32 1 6.0187 0.1324 -0.3513 33 1 6.0615 1.6020 -1.3577 34 1 7.1954 -0.3362 -2.4656 35 1 5.7909 0.2430 -3.3952 36 1 4.3177 -5.1761 -2.9103 37 1 5.1064 -1.4489 0.1424 38 1 3.6629 -2.4909 0.0877 39 1 3.4334 -2.4452 2.5560 40 1 4.9081 -1.4538 2.6597 41 1 3.4032 -0.8924 3.4260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380980235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:59 Heat of formation + Delta-G solvation = -113.241490 kcal Electronic energy + Delta-G solvation = -20850.360565 eV Core-core repulsion = 17922.398417 eV Total energy + Delta-G solvation = -2927.962148 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.08687 -37.38226 -33.48057 -33.19076 -32.44334 -31.66635 -29.58674 -27.40983 -26.09833 -25.07491 -22.17280 -21.95972 -21.55189 -19.99845 -17.90094 -16.60462 -16.15187 -15.60424 -14.99699 -14.60405 -14.41400 -14.14808 -13.99557 -13.43571 -12.93885 -12.66119 -12.48758 -12.15967 -12.01987 -11.81323 -11.80037 -11.57794 -11.28259 -11.11546 -10.89410 -10.82925 -10.57403 -10.54275 -10.42517 -10.32049 -9.95153 -9.62048 -9.38662 -9.16439 -8.68578 -8.44136 -7.79270 -5.99172 -4.11219 3.32831 3.37543 3.39949 3.96806 4.42785 4.76740 5.11011 5.22910 5.30627 5.36153 5.43647 5.47468 5.49506 5.57075 5.62713 5.74049 5.82139 5.88113 5.97231 6.00812 6.03319 6.09681 6.25157 6.26421 6.29691 6.35169 6.35660 6.47941 6.60250 6.63539 6.73700 6.85262 6.90713 6.99814 7.08893 7.54510 7.63154 7.91502 8.31154 8.80491 9.17293 9.58641 11.07990 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.024601 B = 0.007088 C = 0.006741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.895454 B = 3949.518700 C = 4152.671186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.091 3.909 3 H 0.054 0.946 4 C -0.131 4.131 5 C 0.116 3.884 6 C -0.143 4.143 7 C -0.121 4.121 8 C -0.144 4.144 9 C 0.219 3.781 10 H 0.018 0.982 11 C -0.529 4.529 12 H 0.062 0.938 13 C 0.079 3.921 14 N -0.858 5.858 15 Si 0.890 3.110 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 O -0.344 6.344 20 C -0.164 4.164 21 C 0.089 3.911 22 H 0.053 0.947 23 C -0.142 4.142 24 O -0.381 6.381 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.260 0.740 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 8.489 7.513 11.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.033 3.967 3 H 0.072 0.928 4 C -0.169 4.169 5 C 0.075 3.925 6 C -0.181 4.181 7 C -0.158 4.158 8 C -0.182 4.182 9 C 0.164 3.836 10 H 0.035 0.965 11 C -0.566 4.566 12 H 0.080 0.920 13 C -0.127 4.127 14 N -0.494 5.494 15 Si 0.718 3.282 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 O -0.263 6.263 20 C -0.202 4.202 21 C 0.031 3.969 22 H 0.071 0.929 23 C -0.199 4.199 24 O -0.301 6.301 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.157 8.156 7.566 11.876 hybrid contribution 0.620 -0.332 -0.882 1.128 sum -3.537 7.824 6.684 10.881 Atomic orbital electron populations 1.21748 0.93491 1.02880 1.01820 1.22058 0.94502 0.94839 0.85310 0.92793 1.22121 0.95191 1.02234 0.97371 1.21059 0.92655 0.90135 0.88668 1.22262 0.96569 0.98292 1.00970 1.21647 0.95323 0.99281 0.99565 1.22265 1.00098 0.99320 0.96551 1.19685 0.77893 0.88893 0.97170 0.96483 1.20967 1.31079 0.96800 1.07776 0.92004 1.25050 0.94078 0.97623 0.95970 1.70025 1.31769 1.14446 1.33128 0.86709 0.78715 0.79245 0.83569 1.20168 1.21205 1.20127 1.88375 1.24747 1.72337 1.40887 1.22750 1.01594 1.01323 0.94562 1.22113 0.81043 0.98210 0.95518 0.92934 1.21747 1.01128 1.01205 0.95859 1.87837 1.21188 1.78190 1.42913 0.92296 0.91779 0.91278 0.90424 0.91111 0.91903 0.92682 0.92528 0.93320 0.92597 0.92630 0.92987 0.90691 0.90127 0.91786 0.91314 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.57 37.16 0.36 -1.44 16 2 C 0.09 1.39 2.99 -26.67 -0.08 1.31 16 3 H 0.05 0.77 6.66 -51.93 -0.35 0.43 16 4 C -0.13 -2.40 4.57 -26.62 -0.12 -2.52 16 5 C 0.12 2.34 0.86 -90.50 -0.08 2.27 16 6 C -0.14 -2.52 4.35 -26.62 -0.12 -2.64 16 7 C -0.12 -2.14 5.72 -26.54 -0.15 -2.29 16 8 C -0.14 -3.07 5.35 -26.59 -0.14 -3.22 16 9 C 0.22 5.60 2.18 -27.84 -0.06 5.54 16 10 H 0.02 0.48 6.44 -51.93 -0.33 0.14 16 11 C -0.53 -14.90 8.79 -34.44 -0.30 -15.20 16 12 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 13 C 0.08 2.23 5.40 -17.82 -0.10 2.14 16 14 N -0.86 -25.18 12.84 55.43 0.71 -24.47 16 15 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 O -0.34 -8.83 9.27 -35.23 -0.33 -9.16 16 20 C -0.16 -3.19 3.65 -26.62 -0.10 -3.29 16 21 C 0.09 1.43 2.99 -26.67 -0.08 1.35 16 22 H 0.05 0.80 6.54 -51.93 -0.34 0.46 16 23 C -0.14 -1.96 9.57 37.16 0.36 -1.61 16 24 O -0.38 -6.41 10.04 -35.23 -0.35 -6.76 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.85 5.01 -51.93 -0.26 0.59 16 32 H 0.06 0.98 6.57 -51.93 -0.34 0.64 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.07 1.49 5.04 -51.93 -0.26 1.23 16 38 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 307.15 15.07 4.63 4.63 Total: -1.00 -30.04 307.15 -7.90 -37.94 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.92 Total: 1.01 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -0.61 Total: -19.60 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.71 Total: -24.47 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.68 Total: -15.92 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.04 -7.90 -37.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380980235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.304 kcal (2) G-P(sol) polarization free energy of solvation -30.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds