Wall clock time and date at job start Mon Mar 30 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.48469 * 2 1 4 4 C 1.53115 * 109.48554 * 239.95626 * 2 1 3 5 5 C 1.53107 * 109.15135 * 182.47629 * 4 2 1 6 6 C 1.53027 * 109.46154 * 297.12128 * 5 4 2 7 7 C 1.53186 * 109.18039 * 182.37635 * 6 5 4 8 8 C 1.53180 * 109.01578 * 56.89431 * 7 6 5 9 9 C 1.53085 * 109.17116 * 302.95580 * 8 7 6 10 10 H 1.09004 * 109.47972 * 297.66758 * 9 8 7 11 11 C 1.50696 * 109.48380 * 177.63120 * 9 8 7 12 12 H 1.07997 * 119.99995 * 0.05768 * 11 9 8 13 13 C 1.37877 * 120.00141 * 180.02562 * 11 9 8 14 14 N 1.31516 * 120.00060 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00154 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47264 * 59.99725 * 15 13 11 17 17 H 1.48496 * 109.47456 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47221 * 299.99971 * 15 13 11 19 19 O 1.42803 * 109.57491 * 176.93211 * 5 4 2 20 20 C 1.53107 * 109.15281 * 56.92923 * 5 4 2 21 21 C 1.53117 * 109.15351 * 303.09359 * 20 5 4 22 22 H 1.09000 * 109.47805 * 297.52439 * 21 20 5 23 23 C 1.52998 * 109.49058 * 177.50100 * 21 20 5 24 24 O 1.42890 * 109.41259 * 57.50649 * 21 20 5 25 25 H 1.09002 * 109.47153 * 299.96742 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.96915 * 1 2 3 28 28 H 1.08997 * 109.52428 * 302.38272 * 4 2 1 29 29 H 1.09006 * 109.52149 * 62.57540 * 4 2 1 30 30 H 1.09002 * 109.51997 * 302.29101 * 6 5 4 31 31 H 1.09001 * 109.51646 * 62.46963 * 6 5 4 32 32 H 1.08998 * 109.54953 * 297.03566 * 7 6 5 33 33 H 1.09000 * 109.54492 * 176.75596 * 7 6 5 34 34 H 1.08994 * 109.52459 * 183.04684 * 8 7 6 35 35 H 1.09006 * 109.51892 * 62.86406 * 8 7 6 36 36 H 0.96997 * 120.00231 * 179.97438 * 14 13 11 37 37 H 1.08995 * 109.52913 * 183.18604 * 20 5 4 38 38 H 1.09003 * 109.52368 * 62.98925 * 20 5 4 39 39 H 1.09005 * 109.46924 * 300.04587 * 23 21 20 40 40 H 1.08991 * 109.47397 * 60.04997 * 23 21 20 41 41 H 1.08995 * 109.46966 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0407 -0.7227 -1.2495 5 6 3.5705 -0.7725 -1.2109 6 6 4.1282 0.6519 -1.2504 7 6 5.6588 0.5928 -1.2714 8 6 6.1094 -0.2434 -2.4732 9 6 5.4766 -1.6344 -2.3834 10 1 5.8268 -2.1356 -1.4810 11 6 5.8686 -2.4439 -3.5925 12 1 6.5061 -2.0106 -4.3489 13 6 5.4140 -3.7380 -3.7327 14 7 4.6378 -4.2658 -2.8115 15 14 5.9006 -4.7417 -5.2311 16 1 7.3790 -4.8735 -5.2799 17 1 5.2865 -6.0909 -5.1439 18 1 5.4237 -4.0588 -6.4606 19 8 4.0538 -1.5070 -2.3361 20 6 4.0182 -1.4604 0.0816 21 6 3.4307 -0.7096 1.2798 22 1 3.8195 0.3085 1.2969 23 6 3.8219 -1.4269 2.5734 24 8 2.0068 -0.6742 1.1663 25 1 -0.3633 0.5133 0.8903 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5143 -0.8897 28 1 1.6436 -1.7375 -1.2713 29 1 1.7161 -0.1842 -2.1400 30 1 3.7709 1.1583 -2.1471 31 1 3.7969 1.1973 -0.3666 32 1 6.0187 0.1324 -0.3513 33 1 6.0615 1.6020 -1.3577 34 1 7.1954 -0.3362 -2.4656 35 1 5.7909 0.2430 -3.3952 36 1 4.3177 -5.1761 -2.9103 37 1 5.1064 -1.4489 0.1424 38 1 3.6629 -2.4909 0.0877 39 1 3.4334 -2.4452 2.5560 40 1 4.9081 -1.4538 2.6597 41 1 3.4032 -0.8924 3.4260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380980235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:59 Heat of formation + Delta-G solvation = -131.613088 kcal Electronic energy + Delta-G solvation = -20851.157217 eV Core-core repulsion = 17922.398417 eV Total energy + Delta-G solvation = -2928.758800 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.57613 -38.94130 -35.12807 -34.71316 -34.08933 -33.45904 -30.93922 -29.05518 -27.48250 -26.89033 -23.94862 -23.34274 -22.83359 -21.59447 -19.45445 -18.66697 -17.45546 -17.15070 -16.78040 -16.23039 -16.12285 -15.64715 -15.44778 -14.84231 -14.60821 -14.26414 -13.78305 -13.72228 -13.38393 -13.09265 -12.96256 -12.92005 -12.80763 -12.79857 -12.64180 -12.48694 -12.39760 -12.13867 -11.88279 -11.82727 -11.64070 -11.16200 -11.10427 -10.85089 -10.49078 -10.25320 -9.61869 -8.14087 -6.34359 1.38514 1.41300 1.48764 2.39495 2.74799 2.99550 3.48082 3.73607 3.91577 3.96431 3.97668 4.11304 4.17993 4.25843 4.32652 4.36755 4.47316 4.54206 4.58249 4.70394 4.76664 4.78712 4.85328 4.93245 4.98312 5.02349 5.07907 5.09018 5.12077 5.17105 5.25211 5.28749 5.35795 5.42793 5.48518 5.59400 5.80901 6.23899 6.36221 6.68302 7.27225 7.42468 8.92497 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.024601 B = 0.007088 C = 0.006741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.895454 B = 3949.518700 C = 4152.671186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.092 3.908 3 H 0.078 0.922 4 C -0.129 4.129 5 C 0.099 3.901 6 C -0.135 4.135 7 C -0.116 4.116 8 C -0.139 4.139 9 C 0.219 3.781 10 H -0.013 1.013 11 C -0.556 4.556 12 H 0.062 0.938 13 C 0.026 3.974 14 N -0.893 5.893 15 Si 0.958 3.042 16 H -0.264 1.264 17 H -0.283 1.283 18 H -0.271 1.271 19 O -0.382 6.382 20 C -0.155 4.155 21 C 0.093 3.907 22 H 0.076 0.924 23 C -0.140 4.140 24 O -0.392 6.392 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.259 0.741 37 H 0.065 0.935 38 H 0.035 0.965 39 H 0.048 0.952 40 H 0.080 0.920 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.896 10.779 8.127 14.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.035 3.965 3 H 0.095 0.905 4 C -0.167 4.167 5 C 0.059 3.941 6 C -0.173 4.173 7 C -0.153 4.153 8 C -0.177 4.177 9 C 0.163 3.837 10 H 0.004 0.996 11 C -0.593 4.593 12 H 0.080 0.920 13 C -0.177 4.177 14 N -0.530 5.530 15 Si 0.782 3.218 16 H -0.189 1.189 17 H -0.209 1.209 18 H -0.197 1.197 19 O -0.302 6.302 20 C -0.193 4.193 21 C 0.035 3.965 22 H 0.094 0.906 23 C -0.198 4.198 24 O -0.312 6.312 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.232 10.458 8.184 13.938 hybrid contribution 0.628 -1.056 -1.068 1.629 sum -3.603 9.402 7.115 12.329 Atomic orbital electron populations 1.21770 0.91371 1.02737 1.03726 1.22214 0.96183 0.95011 0.83082 0.90465 1.22148 0.93870 1.00931 0.99728 1.21462 0.93897 0.91501 0.87207 1.22196 0.96344 0.96165 1.02550 1.21631 0.95472 1.00373 0.97802 1.22128 1.00027 0.97325 0.98206 1.19496 0.78470 0.90937 0.94781 0.99595 1.21449 1.31365 0.97853 1.08640 0.92011 1.25907 0.94008 0.98851 0.98931 1.70180 1.33098 1.14637 1.35104 0.85639 0.78906 0.77502 0.79708 1.18886 1.20853 1.19663 1.88248 1.24500 1.73939 1.43471 1.22621 1.00952 0.99335 0.96374 1.22171 0.80746 0.98933 0.94616 0.90585 1.21766 1.02055 1.00394 0.95540 1.87853 1.21416 1.78643 1.43267 0.90375 0.93017 0.89364 0.93835 0.90496 0.91700 0.89478 0.92109 0.89799 0.92140 0.93219 0.93195 0.91674 0.94632 0.93305 0.90095 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.57 71.98 0.69 -2.48 16 2 C 0.09 2.63 2.99 30.63 0.09 2.72 16 3 H 0.08 1.88 6.66 -2.39 -0.02 1.87 16 4 C -0.13 -4.71 4.57 30.67 0.14 -4.57 16 5 C 0.10 4.05 0.86 -10.71 -0.01 4.04 16 6 C -0.14 -4.43 4.35 30.67 0.13 -4.30 16 7 C -0.12 -3.82 5.72 30.72 0.18 -3.65 16 8 C -0.14 -5.87 5.35 30.68 0.16 -5.70 16 9 C 0.22 11.58 2.18 29.88 0.07 11.64 16 10 H -0.01 -0.77 6.44 -2.38 -0.02 -0.79 16 11 C -0.56 -32.27 8.79 25.60 0.23 -32.05 16 12 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 13 C 0.03 1.49 5.40 84.65 0.46 1.95 16 14 N -0.89 -54.82 12.84 21.45 0.28 -54.55 16 15 Si 0.96 44.98 29.54 68.60 2.03 47.00 16 16 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 19 O -0.38 -20.32 9.27 -148.98 -1.38 -21.70 16 20 C -0.15 -6.15 3.65 30.67 0.11 -6.04 16 21 C 0.09 2.83 2.99 30.63 0.09 2.92 16 22 H 0.08 2.01 6.54 -2.39 -0.02 1.99 16 23 C -0.14 -3.66 9.57 71.98 0.69 -2.98 16 24 O -0.39 -12.49 10.04 -148.98 -1.50 -13.99 16 25 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 30 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.09 2.31 5.01 -2.39 -0.01 2.30 16 32 H 0.06 1.97 6.57 -2.39 -0.02 1.95 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.06 2.66 5.04 -2.39 -0.01 2.65 16 38 H 0.03 1.68 8.14 -2.39 -0.02 1.67 16 39 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -68.17 307.15 3.44 -64.73 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.99 Total: 16.99 kcal Atomic # 6 Polarization: -41.50 SS G_CDS: 3.02 Total: -38.48 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.28 Total: -54.55 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -2.88 Total: -35.69 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -68.17 3.44 -64.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380980235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.883 kcal (2) G-P(sol) polarization free energy of solvation -68.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds