Wall clock time and date at job start Mon Mar 30 2020 06:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.49734 * 2 1 4 4 C 1.53195 * 109.49138 * 239.94992 * 2 1 3 5 5 C 1.52641 * 109.19672 * 296.76867 * 4 2 1 6 6 C 1.54475 * 109.79994 * 183.17661 * 5 4 2 7 7 C 1.55388 * 100.89060 * 204.87621 * 6 5 4 8 8 C 1.54417 * 102.29945 * 33.65170 * 7 6 5 9 9 C 1.53002 * 109.91485 * 98.20314 * 8 7 6 10 10 C 1.50701 * 109.83015 * 219.13970 * 8 7 6 11 11 H 1.07998 * 120.00365 * 3.30466 * 10 8 7 12 12 C 1.37884 * 119.99672 * 183.30840 * 10 8 7 13 13 N 1.31509 * 120.00427 * 348.13829 * 12 10 8 14 14 Si 1.86807 * 119.99611 * 168.13268 * 12 10 8 15 15 H 1.48498 * 109.46618 * 180.02562 * 14 12 10 16 16 H 1.48498 * 109.46905 * 60.00502 * 14 12 10 17 17 H 1.48494 * 109.47301 * 300.00262 * 14 12 10 18 18 O 1.43117 * 110.55031 * 66.87472 * 5 4 2 19 19 C 1.52634 * 110.28450 * 304.29479 * 5 4 2 20 20 C 1.53187 * 109.20487 * 55.69465 * 19 5 4 21 21 H 1.09002 * 109.49271 * 63.22487 * 20 19 5 22 22 C 1.53002 * 109.51503 * 183.28762 * 20 19 5 23 23 O 1.42912 * 109.34769 * 303.26449 * 20 19 5 24 24 H 1.09003 * 109.47313 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46826 * 300.05211 * 1 2 3 26 26 H 1.09001 * 109.47256 * 60.04678 * 1 2 3 27 27 H 1.09005 * 109.51890 * 176.85763 * 4 2 1 28 28 H 1.08997 * 109.56376 * 56.71255 * 4 2 1 29 29 H 1.09003 * 111.13074 * 322.77993 * 6 5 4 30 30 H 1.08992 * 111.13579 * 86.96436 * 6 5 4 31 31 H 1.08999 * 110.83786 * 275.44164 * 7 6 5 32 32 H 1.09003 * 110.83393 * 151.85462 * 7 6 5 33 33 H 1.08994 * 109.47308 * 176.75332 * 9 8 7 34 34 H 1.09006 * 109.46666 * 296.75361 * 9 8 7 35 35 H 1.09001 * 109.47390 * 56.74870 * 9 8 7 36 36 H 0.96999 * 119.99718 * 354.38110 * 13 12 10 37 37 H 1.09002 * 109.51502 * 175.61380 * 19 5 4 38 38 H 1.09006 * 109.51199 * 295.77226 * 19 5 4 39 39 H 1.08993 * 109.47069 * 179.88676 * 22 20 19 40 40 H 1.08996 * 109.46850 * 299.89028 * 22 20 19 41 41 H 1.09004 * 109.46550 * 59.88725 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0411 -0.7232 -1.2500 5 6 1.5965 -2.1826 -1.2026 6 6 2.1718 -2.9446 -2.4170 7 6 1.1437 -4.1021 -2.5512 8 6 -0.1723 -3.4260 -2.1091 9 6 -0.9730 -2.9906 -3.3380 10 6 -0.9875 -4.3863 -1.2818 11 1 -0.5917 -5.3616 -1.0400 12 6 -2.2389 -4.0197 -0.8337 13 7 -2.6281 -2.7666 -0.9221 14 14 -3.3816 -5.3032 -0.1011 15 1 -4.6574 -4.6582 0.3008 16 1 -2.7394 -5.9157 1.0895 17 1 -3.6565 -6.3558 -1.1118 18 8 0.1736 -2.2785 -1.3223 19 6 2.0711 -2.8386 0.0913 20 6 1.5590 -2.0267 1.2851 21 1 0.4693 -2.0484 1.2993 22 6 2.0985 -2.6307 2.5832 23 8 2.0074 -0.6750 1.1657 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5147 0.8895 26 1 -0.3634 0.5131 -0.8904 27 1 3.1297 -0.6749 -1.2791 28 1 1.6315 -0.2465 -2.1406 29 1 2.1760 -2.3174 -3.3084 30 1 3.1696 -3.3279 -2.2038 31 1 1.3990 -4.9265 -1.8855 32 1 1.0766 -4.4431 -3.5843 33 1 -1.9254 -2.5669 -3.0197 34 1 -0.4087 -2.2405 -3.8922 35 1 -1.1551 -3.8542 -3.9777 36 1 -2.0072 -2.0863 -1.2262 37 1 1.6817 -3.8551 0.1484 38 1 3.1607 -2.8637 0.1084 39 1 1.7354 -2.0513 3.4320 40 1 1.7564 -3.6616 2.6739 41 1 3.1883 -2.6095 2.5683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381031061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:07 Heat of formation + Delta-G solvation = -106.365462 kcal Electronic energy + Delta-G solvation = -21526.448192 eV Core-core repulsion = 18598.784211 eV Total energy + Delta-G solvation = -2927.663981 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.11363 -37.63668 -33.70046 -32.88221 -31.51317 -31.26660 -29.18191 -27.21513 -26.24554 -25.13088 -22.98859 -21.96611 -20.26118 -19.88623 -18.40596 -17.18059 -15.92817 -15.58241 -15.15880 -14.01143 -13.95324 -13.85108 -13.69752 -13.18422 -13.06411 -12.52730 -12.24185 -11.90553 -11.83809 -11.73227 -11.40017 -11.26343 -11.16955 -10.99531 -10.83230 -10.70980 -10.59987 -10.52268 -10.43383 -10.09785 -10.02004 -9.59647 -9.34351 -8.95994 -8.73817 -8.36832 -7.84963 -6.25133 -4.07261 3.44168 3.45346 3.64141 4.24909 4.53688 4.68868 5.20759 5.30011 5.31898 5.42095 5.49295 5.59239 5.72510 5.75095 5.82567 5.94849 5.95715 6.05494 6.10696 6.15001 6.22704 6.30460 6.34348 6.38780 6.44915 6.50886 6.56890 6.61177 6.67364 6.71342 6.76312 6.83754 6.95077 7.10814 7.39470 7.65020 7.82211 8.22523 8.36515 8.63476 8.96455 9.73321 11.11143 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.020438 B = 0.009927 C = 0.008714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.646816 B = 2819.957623 C = 3212.488551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.096 3.904 3 H 0.087 0.913 4 C -0.139 4.139 5 C 0.112 3.888 6 C -0.148 4.148 7 C -0.131 4.131 8 C 0.208 3.792 9 C -0.144 4.144 10 C -0.606 4.606 11 H 0.049 0.951 12 C 0.039 3.961 13 N -0.892 5.892 14 Si 1.055 2.945 15 H -0.283 1.283 16 H -0.289 1.289 17 H -0.289 1.289 18 O -0.355 6.355 19 C -0.147 4.147 20 C 0.087 3.913 21 H 0.076 0.924 22 C -0.140 4.140 23 O -0.386 6.386 24 H 0.111 0.889 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.019 0.981 35 H 0.043 0.957 36 H 0.289 0.711 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.632 2.011 0.473 8.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.038 3.962 3 H 0.105 0.895 4 C -0.177 4.177 5 C 0.071 3.929 6 C -0.186 4.186 7 C -0.168 4.168 8 C 0.171 3.829 9 C -0.202 4.202 10 C -0.644 4.644 11 H 0.067 0.933 12 C -0.170 4.170 13 N -0.529 5.529 14 Si 0.884 3.116 15 H -0.209 1.209 16 H -0.216 1.216 17 H -0.216 1.216 18 O -0.275 6.275 19 C -0.185 4.185 20 C 0.030 3.970 21 H 0.094 0.906 22 C -0.197 4.197 23 O -0.306 6.306 24 H 0.129 0.871 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.074 2.022 1.283 7.468 hybrid contribution 1.613 -0.132 -1.024 1.915 sum 8.687 1.890 0.259 8.894 Atomic orbital electron populations 1.22630 0.94961 1.06602 1.00558 1.22026 0.94738 0.94746 0.84674 0.89534 1.22259 1.00197 0.96211 0.99034 1.21521 0.85307 0.92931 0.93137 1.23200 0.98840 0.98279 0.98263 1.23086 0.95930 0.97413 1.00420 1.19938 0.90425 0.83496 0.89029 1.22059 1.01924 0.98920 0.97273 1.22058 1.03516 1.00574 1.38237 0.93310 1.25604 0.97012 0.99548 0.94814 1.70673 1.40436 1.01096 1.40658 0.83776 0.76447 0.75084 0.76328 1.20861 1.21582 1.21585 1.88580 1.16635 1.49185 1.73118 1.22424 0.99596 1.00958 0.95525 1.22013 0.99507 0.81362 0.94105 0.90632 1.21738 1.01022 1.00487 0.96498 1.87826 1.73671 1.25511 1.43636 0.87088 0.93717 0.92530 0.91480 0.90991 0.91729 0.91832 0.91716 0.92439 0.91148 0.96164 0.93801 0.89743 0.90120 0.92326 0.92425 0.91281 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.67 8.28 37.15 0.31 -3.36 16 2 C 0.10 1.66 3.92 -26.63 -0.10 1.56 16 3 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.14 -2.36 4.75 -26.81 -0.13 -2.49 16 5 C 0.11 2.13 0.66 -90.22 -0.06 2.07 16 6 C -0.15 -2.62 6.01 -24.69 -0.15 -2.77 16 7 C -0.13 -2.64 5.71 -24.72 -0.14 -2.79 16 8 C 0.21 4.91 0.78 -91.03 -0.07 4.84 16 9 C -0.14 -3.36 8.37 37.16 0.31 -3.04 16 10 C -0.61 -16.14 8.23 -34.44 -0.28 -16.43 16 11 H 0.05 1.31 7.53 -52.49 -0.40 0.92 16 12 C 0.04 1.06 5.11 -17.82 -0.09 0.97 16 13 N -0.89 -25.59 12.51 55.43 0.69 -24.90 16 14 Si 1.05 24.49 29.92 -169.99 -5.09 19.40 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 18 O -0.35 -8.08 4.94 -35.23 -0.17 -8.25 16 19 C -0.15 -2.72 4.30 -26.82 -0.12 -2.84 16 20 C 0.09 1.62 2.88 -26.63 -0.08 1.55 16 21 H 0.08 1.64 6.23 -51.93 -0.32 1.32 16 22 C -0.14 -2.18 9.57 37.16 0.36 -1.82 16 23 O -0.39 -7.16 10.23 -35.23 -0.36 -7.52 16 24 H 0.11 2.54 3.48 -51.93 -0.18 2.36 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 30 H 0.06 1.00 7.98 -51.93 -0.41 0.58 16 31 H 0.06 1.33 7.40 -51.93 -0.38 0.95 16 32 H 0.06 1.09 7.81 -51.93 -0.41 0.69 16 33 H 0.07 1.81 5.70 -51.93 -0.30 1.51 16 34 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.04 0.97 8.12 -51.93 -0.42 0.55 16 36 H 0.29 8.25 4.98 -40.82 -0.20 8.04 16 37 H 0.08 1.62 7.64 -51.93 -0.40 1.23 16 38 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 303.79 15.07 4.58 4.58 Total: -1.00 -28.17 303.79 -7.45 -35.62 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.86 Total: 5.62 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: -0.24 Total: -24.56 kcal Atomic # 7 Polarization: -25.59 SS G_CDS: 0.69 Total: -24.90 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.53 Total: -15.77 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.09 Total: 19.40 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.17 -7.45 -35.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381031061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.743 kcal (2) G-P(sol) polarization free energy of solvation -28.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds