Wall clock time and date at job start Mon Mar 30 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.64139 * 2 1 4 4 C 1.53022 * 109.64105 * 239.36150 * 2 1 3 5 5 C 1.50065 * 110.14993 * 289.75236 * 4 2 1 6 6 C 1.29449 * 124.07435 * 342.87366 * 5 4 2 7 7 C 1.50069 * 124.07414 * 0.46390 * 6 5 4 8 8 C 1.53015 * 110.14845 * 342.87379 * 7 6 5 9 9 H 1.09010 * 109.81544 * 289.64597 * 8 7 6 10 10 C 1.52999 * 109.64466 * 169.12161 * 8 7 6 11 11 O 1.42902 * 109.47063 * 66.05430 * 10 8 7 12 12 C 1.42903 * 114.00103 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47290 * 179.97438 * 12 11 10 14 14 O 1.42901 * 109.47091 * 64.99730 * 13 12 11 15 15 C 1.42905 * 113.99785 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.46972 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47261 * 60.00310 * 20 18 16 23 23 H 1.48500 * 109.47454 * 300.00304 * 20 18 16 24 24 H 1.09001 * 109.47233 * 299.58334 * 1 2 3 25 25 H 1.08999 * 109.46753 * 59.57961 * 1 2 3 26 26 H 1.08998 * 109.47117 * 179.58135 * 1 2 3 27 27 H 1.08999 * 109.35918 * 49.96240 * 4 2 1 28 28 H 1.09001 * 109.35688 * 169.68549 * 4 2 1 29 29 H 1.08002 * 117.96172 * 162.84502 * 5 4 2 30 30 H 1.07999 * 117.96205 * 180.49081 * 6 5 4 31 31 H 1.09004 * 109.35328 * 222.66326 * 7 6 5 32 32 H 1.08998 * 109.35646 * 103.07879 * 7 6 5 33 33 H 1.08997 * 109.47085 * 306.05695 * 10 8 7 34 34 H 1.09001 * 109.47640 * 186.04969 * 10 8 7 35 35 H 1.09002 * 109.46900 * 59.99479 * 12 11 10 36 36 H 1.09004 * 109.46905 * 300.00026 * 12 11 10 37 37 H 1.09003 * 109.47090 * 304.99630 * 13 12 11 38 38 H 1.09002 * 109.47184 * 184.99999 * 13 12 11 39 39 H 1.09001 * 109.47112 * 60.00541 * 15 14 13 40 40 H 1.08993 * 109.47057 * 299.99974 * 15 14 13 41 41 H 0.97001 * 119.99934 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8965 1.0266 0.0000 4 6 2.0444 -0.7345 -1.2400 5 6 1.7698 -2.2049 -1.1209 6 6 1.4812 -2.8011 -0.0087 7 6 1.3712 -2.1033 1.3154 8 6 2.0456 -0.7315 1.2458 9 1 3.1266 -0.8542 1.1776 10 6 1.6977 0.0767 2.4975 11 8 2.2795 -0.5470 3.6441 12 6 2.0130 0.1318 4.8730 13 6 2.6800 -0.6204 6.0263 14 8 4.0994 -0.5730 5.8683 15 6 4.8219 -1.2494 6.8991 16 6 6.3009 -1.1366 6.6329 17 1 6.6538 -0.6015 5.7636 18 6 7.2035 -1.7156 7.4995 19 7 6.7738 -2.3667 8.5582 20 14 9.0368 -1.5752 7.1698 21 1 9.7877 -2.2781 8.2410 22 1 9.4277 -0.1427 7.1490 23 1 9.3525 -2.1935 5.8571 24 1 -0.3634 0.5073 0.8937 25 1 -0.3633 0.5204 -0.8862 26 1 -0.3633 -1.0276 -0.0075 27 1 1.5428 -0.3438 -2.1253 28 1 3.1188 -0.5761 -1.3340 29 1 1.8152 -2.8030 -2.0190 30 1 1.3093 -3.8670 -0.0352 31 1 1.8568 -2.7062 2.0829 32 1 0.3192 -1.9762 1.5705 33 1 0.6149 0.1158 2.6155 34 1 2.0891 1.0890 2.3969 35 1 0.9366 0.1718 5.0400 36 1 2.4106 1.1455 4.8218 37 1 2.3485 -1.6588 6.0227 38 1 2.4038 -0.1542 6.9721 39 1 4.5350 -2.3008 6.9140 40 1 4.5902 -0.7958 7.8628 41 1 5.8218 -2.4393 8.7297 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385348670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:14 Heat of formation + Delta-G solvation = -105.450271 kcal Electronic energy + Delta-G solvation = -18788.814828 eV Core-core repulsion = 15861.190533 eV Total energy + Delta-G solvation = -2927.624295 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.69240 -37.70556 -36.34836 -33.03074 -32.55627 -31.50736 -29.45354 -27.50582 -26.28175 -25.37330 -22.57902 -22.49910 -21.99373 -20.58271 -17.40169 -16.96890 -16.58228 -16.41084 -16.08848 -14.97338 -14.84405 -14.58241 -14.07654 -14.02683 -13.69397 -13.34659 -13.20780 -12.94500 -12.54769 -12.13016 -11.97328 -11.88683 -11.63167 -11.51553 -11.27936 -11.03354 -10.68849 -10.61234 -10.40614 -10.18104 -10.12121 -10.05189 -9.38581 -9.06094 -8.83283 -8.59702 -8.21132 -6.43468 -4.11427 2.21506 3.45525 3.48746 3.67393 3.78365 4.46390 4.50381 4.55238 4.76649 4.80464 5.05327 5.08665 5.15704 5.24215 5.29857 5.34635 5.40462 5.42630 5.48250 5.54501 5.62497 5.67524 5.76415 5.81772 5.85226 5.90987 5.92506 5.95317 6.08312 6.14282 6.21858 6.32639 6.58383 6.78508 6.87996 7.16327 7.43321 7.92831 8.21547 8.67541 8.84612 9.59086 10.96947 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.025704 B = 0.003793 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.066421 B = 7380.137769 C = 7942.305837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 H 0.074 0.926 4 C -0.084 4.084 5 C -0.163 4.163 6 C -0.148 4.148 7 C -0.085 4.085 8 C -0.081 4.081 9 H 0.084 0.916 10 C 0.066 3.934 11 O -0.372 6.372 12 C 0.070 3.930 13 C 0.061 3.939 14 O -0.380 6.380 15 C 0.185 3.815 16 C -0.595 4.595 17 H 0.060 0.940 18 C 0.016 3.984 19 N -0.912 5.912 20 Si 1.079 2.921 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.285 1.285 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.051 0.949 39 H -0.004 1.004 40 H -0.006 1.006 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.624 4.061 -17.156 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.105 4.105 3 H 0.092 0.908 4 C -0.121 4.121 5 C -0.181 4.181 6 C -0.166 4.166 7 C -0.121 4.121 8 C -0.099 4.099 9 H 0.102 0.898 10 C -0.011 4.011 11 O -0.291 6.291 12 C -0.007 4.007 13 C -0.017 4.017 14 O -0.299 6.299 15 C 0.111 3.889 16 C -0.633 4.633 17 H 0.079 0.921 18 C -0.187 4.187 19 N -0.548 5.548 20 Si 0.906 3.094 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.212 1.212 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.013 0.987 40 H 0.012 0.988 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.928 3.553 -16.732 21.441 hybrid contribution -1.945 0.438 -0.318 2.019 sum -14.873 3.991 -17.050 22.975 Atomic orbital electron populations 1.21945 0.95123 1.02350 1.01339 1.21152 0.96042 0.99063 0.94199 0.90801 1.20472 1.01187 0.92814 0.97628 1.21977 1.01991 0.96335 0.97771 1.22110 1.00374 0.99461 0.94653 1.20477 1.00777 0.95441 0.95444 1.21187 1.01537 0.94846 0.92355 0.89805 1.22540 0.96505 0.95869 0.86192 1.88023 1.75508 1.51406 1.14185 1.22520 0.97465 0.96284 0.84441 1.22304 0.85246 0.99056 0.95049 1.87951 1.14110 1.77052 1.50806 1.20292 0.92508 0.90516 0.85625 1.21912 0.89909 1.38596 1.12905 0.92131 1.25943 1.06652 0.93160 0.92898 1.70800 1.17464 1.39676 1.26902 0.83402 0.73594 0.76442 0.75922 1.20635 1.21216 1.21182 0.92718 0.92917 0.91923 0.91129 0.90803 0.88282 0.88146 0.90150 0.90917 0.93698 0.93562 0.92878 0.92837 0.93691 0.93087 0.98653 0.98818 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.32 37.16 0.31 -0.96 16 2 C -0.09 -0.81 2.71 -90.40 -0.25 -1.06 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.08 -0.75 5.56 -28.18 -0.16 -0.91 16 5 C -0.16 -1.58 9.40 -35.90 -0.34 -1.92 16 6 C -0.15 -1.57 9.15 -35.90 -0.33 -1.89 16 7 C -0.08 -0.99 4.61 -28.18 -0.13 -1.12 16 8 C -0.08 -0.97 2.27 -90.41 -0.21 -1.17 16 9 H 0.08 1.17 8.13 -51.92 -0.42 0.75 16 10 C 0.07 0.84 5.01 37.16 0.19 1.03 16 11 O -0.37 -6.39 10.09 -40.08 -0.40 -6.80 16 12 C 0.07 1.11 6.32 37.16 0.23 1.34 16 13 C 0.06 1.19 6.32 37.16 0.23 1.43 16 14 O -0.38 -9.81 10.29 -40.08 -0.41 -10.22 16 15 C 0.19 5.27 5.00 36.00 0.18 5.45 16 16 C -0.60 -18.38 9.43 -34.44 -0.32 -18.70 16 17 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 18 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 19 N -0.91 -28.59 13.65 55.43 0.76 -27.83 16 20 Si 1.08 26.07 29.90 -169.99 -5.08 20.98 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H 0.05 0.44 6.80 -51.93 -0.35 0.09 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.56 5.71 -51.93 -0.30 0.26 16 27 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.10 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 32 H 0.07 0.78 6.85 -51.93 -0.36 0.42 16 33 H 0.04 0.50 6.87 -51.93 -0.36 0.14 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.00 -0.12 8.01 -51.93 -0.42 -0.54 16 40 H -0.01 -0.17 8.01 -51.93 -0.42 -0.58 16 41 H 0.27 8.29 7.22 -40.82 -0.29 8.00 16 LS Contribution 327.71 15.07 4.94 4.94 Total: -1.00 -33.62 327.71 -8.07 -41.70 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -7.19 Total: -4.68 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -0.68 Total: -18.09 kcal Atomic # 7 Polarization: -28.59 SS G_CDS: 0.76 Total: -27.83 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.82 Total: -17.02 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.08 Total: 20.98 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.62 -8.07 -41.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385348670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.755 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds