Wall clock time and date at job start Mon Mar 30 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.64139 * 2 1 4 4 C 1.53022 * 109.64105 * 239.36150 * 2 1 3 5 5 C 1.50065 * 110.14993 * 289.75236 * 4 2 1 6 6 C 1.29449 * 124.07435 * 342.87366 * 5 4 2 7 7 C 1.50069 * 124.07414 * 0.46390 * 6 5 4 8 8 C 1.53015 * 110.14845 * 342.87379 * 7 6 5 9 9 H 1.09010 * 109.81544 * 289.64597 * 8 7 6 10 10 C 1.52999 * 109.64466 * 169.12161 * 8 7 6 11 11 O 1.42902 * 109.47063 * 66.05430 * 10 8 7 12 12 C 1.42903 * 114.00103 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47290 * 179.97438 * 12 11 10 14 14 O 1.42901 * 109.47091 * 64.99730 * 13 12 11 15 15 C 1.42905 * 113.99785 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.46972 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47261 * 60.00310 * 20 18 16 23 23 H 1.48500 * 109.47454 * 300.00304 * 20 18 16 24 24 H 1.09001 * 109.47233 * 299.58334 * 1 2 3 25 25 H 1.08999 * 109.46753 * 59.57961 * 1 2 3 26 26 H 1.08998 * 109.47117 * 179.58135 * 1 2 3 27 27 H 1.08999 * 109.35918 * 49.96240 * 4 2 1 28 28 H 1.09001 * 109.35688 * 169.68549 * 4 2 1 29 29 H 1.08002 * 117.96172 * 162.84502 * 5 4 2 30 30 H 1.07999 * 117.96205 * 180.49081 * 6 5 4 31 31 H 1.09004 * 109.35328 * 222.66326 * 7 6 5 32 32 H 1.08998 * 109.35646 * 103.07879 * 7 6 5 33 33 H 1.08997 * 109.47085 * 306.05695 * 10 8 7 34 34 H 1.09001 * 109.47640 * 186.04969 * 10 8 7 35 35 H 1.09002 * 109.46900 * 59.99479 * 12 11 10 36 36 H 1.09004 * 109.46905 * 300.00026 * 12 11 10 37 37 H 1.09003 * 109.47090 * 304.99630 * 13 12 11 38 38 H 1.09002 * 109.47184 * 184.99999 * 13 12 11 39 39 H 1.09001 * 109.47112 * 60.00541 * 15 14 13 40 40 H 1.08993 * 109.47057 * 299.99974 * 15 14 13 41 41 H 0.97001 * 119.99934 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8965 1.0266 0.0000 4 6 2.0444 -0.7345 -1.2400 5 6 1.7698 -2.2049 -1.1209 6 6 1.4812 -2.8011 -0.0087 7 6 1.3712 -2.1033 1.3154 8 6 2.0456 -0.7315 1.2458 9 1 3.1266 -0.8542 1.1776 10 6 1.6977 0.0767 2.4975 11 8 2.2795 -0.5470 3.6441 12 6 2.0130 0.1318 4.8730 13 6 2.6800 -0.6204 6.0263 14 8 4.0994 -0.5730 5.8683 15 6 4.8219 -1.2494 6.8991 16 6 6.3009 -1.1366 6.6329 17 1 6.6538 -0.6015 5.7636 18 6 7.2035 -1.7156 7.4995 19 7 6.7738 -2.3667 8.5582 20 14 9.0368 -1.5752 7.1698 21 1 9.7877 -2.2781 8.2410 22 1 9.4277 -0.1427 7.1490 23 1 9.3525 -2.1935 5.8571 24 1 -0.3634 0.5073 0.8937 25 1 -0.3633 0.5204 -0.8862 26 1 -0.3633 -1.0276 -0.0075 27 1 1.5428 -0.3438 -2.1253 28 1 3.1188 -0.5761 -1.3340 29 1 1.8152 -2.8030 -2.0190 30 1 1.3093 -3.8670 -0.0352 31 1 1.8568 -2.7062 2.0829 32 1 0.3192 -1.9762 1.5705 33 1 0.6149 0.1158 2.6155 34 1 2.0891 1.0890 2.3969 35 1 0.9366 0.1718 5.0400 36 1 2.4106 1.1455 4.8218 37 1 2.3485 -1.6588 6.0227 38 1 2.4038 -0.1542 6.9721 39 1 4.5350 -2.3008 6.9140 40 1 4.5902 -0.7958 7.8628 41 1 5.8218 -2.4393 8.7297 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385348670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:14 Heat of formation + Delta-G solvation = -125.978057 kcal Electronic energy + Delta-G solvation = -18789.704980 eV Core-core repulsion = 15861.190533 eV Total energy + Delta-G solvation = -2928.514447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.57678 -39.17912 -37.99992 -35.26606 -33.45911 -32.42727 -30.91637 -28.62077 -28.12956 -26.32115 -24.78905 -23.57094 -23.31206 -21.43776 -19.23855 -18.32158 -17.91069 -17.61139 -17.23814 -16.41447 -16.30023 -15.95413 -15.63176 -15.22142 -15.02574 -14.53725 -14.42060 -14.07545 -13.78615 -13.64237 -13.49015 -13.01970 -12.79013 -12.69119 -12.57625 -12.47846 -12.14301 -11.99709 -11.89022 -11.47812 -11.24810 -10.95795 -10.89789 -10.87461 -10.53007 -10.39556 -9.86059 -8.86562 -6.57357 1.42075 1.51467 1.60803 1.82380 2.48215 2.66335 3.00864 3.01475 3.68118 3.73077 3.89786 4.08059 4.14600 4.22933 4.27714 4.35141 4.40328 4.44633 4.48156 4.49584 4.50448 4.60245 4.66779 4.73695 4.79515 4.82819 4.86653 4.99855 5.07360 5.11004 5.17247 5.27307 5.31174 5.52587 5.64134 5.79808 5.88841 6.07865 6.27679 6.31522 6.63482 7.23604 8.54861 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.025704 B = 0.003793 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.066421 B = 7380.137769 C = 7942.305837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 H 0.081 0.919 4 C -0.087 4.087 5 C -0.156 4.156 6 C -0.168 4.168 7 C -0.081 4.081 8 C -0.081 4.081 9 H 0.055 0.945 10 C 0.063 3.937 11 O -0.408 6.408 12 C 0.074 3.926 13 C 0.048 3.952 14 O -0.402 6.402 15 C 0.195 3.805 16 C -0.627 4.627 17 H 0.051 0.949 18 C -0.028 4.028 19 N -0.927 5.927 20 Si 1.129 2.871 21 H -0.273 1.273 22 H -0.265 1.265 23 H -0.269 1.269 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.043 0.957 38 H 0.071 0.929 39 H -0.020 1.020 40 H -0.012 1.012 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.110 5.069 -18.610 24.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 H 0.099 0.901 4 C -0.124 4.124 5 C -0.174 4.174 6 C -0.186 4.186 7 C -0.118 4.118 8 C -0.100 4.100 9 H 0.073 0.927 10 C -0.013 4.013 11 O -0.328 6.328 12 C -0.002 4.002 13 C -0.028 4.028 14 O -0.322 6.322 15 C 0.120 3.880 16 C -0.665 4.665 17 H 0.070 0.930 18 C -0.225 4.225 19 N -0.563 5.563 20 Si 0.947 3.053 21 H -0.198 1.198 22 H -0.190 1.190 23 H -0.194 1.194 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.132 0.868 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.089 0.911 39 H -0.002 1.002 40 H 0.005 0.995 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.463 4.571 -18.196 23.092 hybrid contribution -1.901 0.127 0.102 1.908 sum -15.365 4.699 -18.094 24.198 Atomic orbital electron populations 1.21925 0.93940 1.02304 1.02298 1.21152 0.96945 0.99054 0.92881 0.90058 1.20552 1.01312 0.92333 0.98212 1.22215 1.00261 0.96995 0.97934 1.22137 1.02099 0.99868 0.94458 1.20396 1.00930 0.95025 0.95405 1.21192 0.99890 0.95430 0.93491 0.92690 1.22750 0.97697 0.95901 0.84962 1.87983 1.76666 1.52625 1.15516 1.22542 0.99366 0.95277 0.83007 1.22728 0.82017 1.00045 0.98057 1.87894 1.17636 1.76617 1.50042 1.19983 0.92231 0.89760 0.86052 1.22283 0.91604 1.39416 1.13171 0.93044 1.27656 1.11436 0.91614 0.91802 1.70924 1.16885 1.40657 1.27842 0.82823 0.67897 0.77864 0.76706 1.19803 1.19000 1.19403 0.92345 0.91408 0.92449 0.89001 0.91041 0.86773 0.87659 0.93088 0.89949 0.91327 0.92996 0.88572 0.92591 0.93884 0.91110 1.00247 0.99488 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.32 71.98 0.60 -1.51 16 2 C -0.08 -1.41 2.71 -10.65 -0.03 -1.44 16 3 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.09 -1.40 5.56 29.66 0.16 -1.24 16 5 C -0.16 -2.80 9.40 27.03 0.25 -2.55 16 6 C -0.17 -3.47 9.15 27.03 0.25 -3.23 16 7 C -0.08 -1.90 4.61 29.66 0.14 -1.76 16 8 C -0.08 -1.93 2.27 -10.66 -0.02 -1.95 16 9 H 0.05 1.59 8.13 -2.38 -0.02 1.57 16 10 C 0.06 1.55 5.01 71.98 0.36 1.91 16 11 O -0.41 -13.94 10.09 -144.34 -1.46 -15.39 16 12 C 0.07 2.28 6.32 71.98 0.45 2.73 16 13 C 0.05 1.88 6.32 71.98 0.45 2.33 16 14 O -0.40 -21.21 10.29 -144.34 -1.49 -22.69 16 15 C 0.20 11.43 5.00 71.24 0.36 11.79 16 16 C -0.63 -39.46 9.43 25.60 0.24 -39.22 16 17 H 0.05 3.25 7.81 -2.91 -0.02 3.23 16 18 C -0.03 -1.67 5.46 84.65 0.46 -1.20 16 19 N -0.93 -58.61 13.65 21.45 0.29 -58.32 16 20 Si 1.13 51.68 29.90 68.60 2.05 53.73 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H 0.06 0.79 6.80 -2.39 -0.02 0.77 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.89 5.71 -2.39 -0.01 0.88 16 27 H 0.09 1.11 8.11 -2.39 -0.02 1.09 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.11 1.70 8.06 -2.91 -0.02 1.67 16 30 H 0.11 2.02 8.06 -2.91 -0.02 1.99 16 31 H 0.05 1.47 8.12 -2.38 -0.02 1.45 16 32 H 0.08 1.72 6.85 -2.39 -0.02 1.70 16 33 H 0.07 1.35 6.87 -2.39 -0.02 1.34 16 34 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 35 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H -0.02 -1.21 8.01 -2.39 -0.02 -1.23 16 40 H -0.01 -0.73 8.01 -2.39 -0.02 -0.75 16 41 H 0.26 16.30 7.22 -92.71 -0.67 15.63 16 Total: -1.00 -73.29 327.71 4.15 -69.14 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.07 Total: 8.86 kcal Atomic # 6 Polarization: -39.01 SS G_CDS: 3.68 Total: -35.33 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: 0.29 Total: -58.32 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -2.94 Total: -38.08 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 2.05 Total: 53.73 kcal Total: -73.29 4.15 -69.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385348670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.840 kcal (2) G-P(sol) polarization free energy of solvation -73.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds