Wall clock time and date at job start Mon Mar 30 2020 06:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.63809 * 2 1 4 4 C 1.53022 * 109.81541 * 239.47226 * 2 1 3 5 5 C 1.50069 * 110.14786 * 190.77543 * 4 2 1 6 6 C 1.29443 * 124.07390 * 17.13596 * 5 4 2 7 7 C 1.50069 * 124.07433 * 359.52642 * 6 5 4 8 8 C 1.53025 * 110.14997 * 17.13284 * 7 6 5 9 9 H 1.09005 * 109.81193 * 70.34738 * 8 7 6 10 10 C 1.52997 * 109.64474 * 190.87697 * 8 7 6 11 11 O 1.42898 * 109.47319 * 293.94791 * 10 8 7 12 12 C 1.42902 * 114.00186 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47230 * 179.97438 * 12 11 10 14 14 O 1.42902 * 109.47354 * 64.99741 * 13 12 11 15 15 C 1.42895 * 114.00157 * 179.97438 * 14 13 12 16 16 C 1.50709 * 109.47177 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99711 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00075 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00077 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00083 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47178 * 89.99836 * 20 18 16 22 22 H 1.48498 * 109.47285 * 210.00559 * 20 18 16 23 23 H 1.48502 * 109.46996 * 330.00184 * 20 18 16 24 24 H 1.08997 * 109.46886 * 299.57798 * 1 2 3 25 25 H 1.08997 * 109.46948 * 59.57845 * 1 2 3 26 26 H 1.09001 * 109.46847 * 179.57333 * 1 2 3 27 27 H 1.08999 * 109.36114 * 310.98262 * 4 2 1 28 28 H 1.09004 * 109.35745 * 70.70883 * 4 2 1 29 29 H 1.08000 * 117.96299 * 197.10892 * 5 4 2 30 30 H 1.07999 * 117.96317 * 179.55363 * 6 5 4 31 31 H 1.08999 * 109.36152 * 256.92373 * 7 6 5 32 32 H 1.08999 * 109.36063 * 137.34284 * 7 6 5 33 33 H 1.09002 * 109.47153 * 173.94484 * 10 8 7 34 34 H 1.09001 * 109.46832 * 53.94675 * 10 8 7 35 35 H 1.09001 * 109.46918 * 299.99649 * 12 11 10 36 36 H 1.08999 * 109.46857 * 59.99535 * 12 11 10 37 37 H 1.08999 * 109.47305 * 185.00032 * 13 12 11 38 38 H 1.09004 * 109.47201 * 305.00192 * 13 12 11 39 39 H 1.08998 * 109.46934 * 300.00056 * 15 14 13 40 40 H 1.08997 * 109.47320 * 60.00223 * 15 14 13 41 41 H 0.97001 * 120.00030 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8964 1.0265 0.0000 4 6 2.0488 -0.7313 -1.2401 5 6 3.5261 -0.9668 -1.1210 6 6 4.1845 -0.8957 -0.0088 7 6 3.5644 -0.5576 1.3152 8 6 2.0456 -0.7316 1.2458 9 1 1.7978 -1.7909 1.1774 10 6 1.4015 -0.1324 2.4975 11 8 1.7934 -0.8900 3.6440 12 6 1.2428 -0.4115 4.8729 13 6 1.7262 -1.2933 6.0259 14 8 3.1417 -1.1581 6.1679 15 6 3.6977 -1.9444 7.2236 16 6 5.1876 -1.7251 7.2823 17 1 5.6624 -1.0528 6.5829 18 6 5.9444 -2.3826 8.2287 19 7 5.3663 -3.2015 9.0800 20 14 7.7912 -2.1113 8.3010 21 1 8.0896 -0.9765 9.2112 22 1 8.4526 -3.3402 8.8084 23 1 8.2996 -1.8014 6.9405 24 1 -0.3633 0.5073 0.8937 25 1 -0.3633 0.5204 -0.8862 26 1 -0.3633 -1.0277 -0.0077 27 1 1.5368 -1.6888 -1.3355 28 1 1.8516 -0.1263 -2.1251 29 1 4.0739 -1.2114 -2.0191 30 1 5.2463 -1.0913 -0.0355 31 1 3.7983 0.4759 1.5705 32 1 3.9689 -1.2175 2.0827 33 1 0.3165 -0.1607 2.3968 34 1 1.7287 0.9006 2.6155 35 1 1.5663 0.6158 5.0403 36 1 0.1545 -0.4459 4.8211 37 1 1.2372 -0.9840 6.9496 38 1 1.4800 -2.3341 5.8154 39 1 3.2496 -1.6480 8.1720 40 1 3.4923 -2.9987 7.0384 41 1 5.8989 -3.6644 9.7456 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385348671.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:17 Heat of formation + Delta-G solvation = -103.660067 kcal Electronic energy + Delta-G solvation = -18771.936945 eV Core-core repulsion = 15844.390279 eV Total energy + Delta-G solvation = -2927.546666 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.41374 -37.55324 -36.17578 -33.11168 -32.69511 -31.62256 -29.38693 -26.96859 -26.64605 -25.53379 -22.38430 -22.22674 -21.85521 -20.45577 -18.15263 -16.60906 -16.38653 -16.02603 -15.88582 -14.98304 -14.66548 -14.53918 -14.26785 -13.88029 -13.58328 -13.51888 -12.97584 -12.76507 -12.34091 -12.21292 -12.04911 -11.83865 -11.66029 -11.41168 -11.18694 -10.80954 -10.76819 -10.60613 -10.54136 -10.29334 -10.03656 -9.95146 -9.30683 -9.05266 -8.98080 -8.78744 -8.12612 -6.07125 -4.08327 2.29224 3.33081 3.37780 3.43863 3.84992 4.38259 4.55616 4.60628 4.79248 4.90672 4.96073 5.19548 5.23458 5.29367 5.36833 5.39349 5.44532 5.46245 5.56465 5.60458 5.63846 5.69136 5.76351 5.85305 5.92210 6.03760 6.05619 6.08368 6.10546 6.25771 6.29739 6.40677 6.64929 6.97063 7.14035 7.46894 7.50911 7.83956 8.19771 8.63004 9.05435 9.56335 11.04612 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.024146 B = 0.004082 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.327635 B = 6858.120020 C = 7823.706901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 H 0.073 0.927 4 C -0.081 4.081 5 C -0.173 4.173 6 C -0.142 4.142 7 C -0.088 4.088 8 C -0.078 4.078 9 H 0.080 0.920 10 C 0.062 3.938 11 O -0.372 6.372 12 C 0.069 3.931 13 C 0.064 3.936 14 O -0.388 6.388 15 C 0.194 3.806 16 C -0.512 4.512 17 H 0.066 0.934 18 C 0.056 3.944 19 N -0.900 5.900 20 Si 0.907 3.093 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.271 1.271 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.004 0.996 40 H 0.006 0.994 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.158 6.323 -18.262 21.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.118 4.118 5 C -0.191 4.191 6 C -0.160 4.160 7 C -0.125 4.125 8 C -0.097 4.097 9 H 0.098 0.902 10 C -0.015 4.015 11 O -0.291 6.291 12 C -0.008 4.008 13 C -0.014 4.014 14 O -0.308 6.308 15 C 0.120 3.880 16 C -0.551 4.551 17 H 0.085 0.915 18 C -0.145 4.145 19 N -0.539 5.539 20 Si 0.735 3.265 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.196 1.196 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.022 0.978 40 H 0.023 0.977 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.871 6.155 -18.240 21.634 hybrid contribution 0.676 0.051 0.376 0.775 sum -9.195 6.206 -17.864 21.028 Atomic orbital electron populations 1.21935 0.95154 1.02078 1.01729 1.21168 0.95375 0.99629 0.94292 0.90895 1.20450 0.93411 1.00386 0.97537 1.21974 0.96073 1.03241 0.97795 1.22189 0.99752 0.99362 0.94658 1.20498 0.94057 1.02453 0.95485 1.21178 0.95410 1.00756 0.92308 0.90188 1.22624 0.97798 0.94862 0.86170 1.88020 1.72460 1.54506 1.14116 1.22541 0.95801 0.98153 0.84265 1.22254 0.85978 0.98333 0.94839 1.87911 1.17263 1.69143 1.56510 1.20204 0.93885 0.89782 0.84160 1.21067 0.91275 1.26512 1.16206 0.91536 1.24944 0.99387 0.94964 0.95230 1.69966 1.36097 1.28712 1.19159 0.86342 0.84139 0.77570 0.78478 1.20493 1.21085 1.19597 0.92203 0.92709 0.92451 0.90998 0.91320 0.88299 0.88002 0.90858 0.89433 0.93347 0.93666 0.92907 0.93030 0.93110 0.93725 0.97832 0.97659 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.67 37.16 0.32 -0.90 16 2 C -0.09 -0.82 2.39 -90.40 -0.22 -1.04 16 3 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 4 C -0.08 -0.73 5.44 -28.18 -0.15 -0.88 16 5 C -0.17 -1.79 9.80 -35.90 -0.35 -2.14 16 6 C -0.14 -1.67 9.80 -35.90 -0.35 -2.02 16 7 C -0.09 -1.17 5.25 -28.18 -0.15 -1.31 16 8 C -0.08 -0.94 2.10 -90.41 -0.19 -1.13 16 9 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 10 C 0.06 0.80 4.94 37.16 0.18 0.98 16 11 O -0.37 -6.36 10.08 -40.08 -0.40 -6.77 16 12 C 0.07 1.10 6.32 37.16 0.23 1.33 16 13 C 0.06 1.24 6.32 37.16 0.23 1.47 16 14 O -0.39 -9.88 10.29 -40.08 -0.41 -10.29 16 15 C 0.19 5.51 5.69 36.01 0.20 5.71 16 16 C -0.51 -15.53 9.43 -34.44 -0.32 -15.85 16 17 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 20 Si 0.91 22.25 29.54 -169.99 -5.02 17.23 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H 0.06 0.47 6.26 -51.93 -0.32 0.15 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.90 8.06 -52.49 -0.42 0.47 16 30 H 0.10 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 32 H 0.09 1.38 8.12 -51.93 -0.42 0.96 16 33 H 0.05 0.53 6.07 -51.93 -0.32 0.22 16 34 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 40 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 332.61 15.07 5.01 5.01 Total: -1.00 -32.35 332.61 -8.10 -40.45 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -7.36 Total: -4.73 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -0.65 Total: -14.22 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 0.74 Total: -26.68 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.82 Total: -17.05 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.35 -8.10 -40.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385348671.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.206 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds