Wall clock time and date at job start Mon Mar 30 2020 06:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00095 * 2 1 4 4 C 1.52996 * 109.46761 * 149.99869 * 3 2 1 5 5 C 1.53011 * 109.46897 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.44564 * 300.00631 * 5 4 3 7 7 C 1.53101 * 109.34584 * 300.18919 * 6 5 4 8 8 C 1.53179 * 109.15494 * 297.43665 * 7 6 5 9 9 C 1.53177 * 109.09411 * 303.15273 * 8 7 6 10 10 C 1.53086 * 109.16738 * 56.95744 * 9 8 7 11 11 H 1.08995 * 109.48158 * 62.37785 * 10 9 8 12 12 C 1.50706 * 109.48069 * 182.39899 * 10 9 8 13 13 H 1.08002 * 119.99832 * 359.97438 * 12 10 9 14 14 C 1.37875 * 120.00268 * 179.97438 * 12 10 9 15 15 N 1.31518 * 119.99721 * 0.02562 * 14 12 10 16 16 Si 1.86794 * 120.00226 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47401 * 89.99734 * 16 14 12 18 18 H 1.48496 * 109.47550 * 210.00131 * 16 14 12 19 19 H 1.48503 * 109.46983 * 329.99882 * 16 14 12 20 20 O 1.42868 * 109.52585 * 180.17245 * 6 5 4 21 21 C 1.52997 * 109.47935 * 60.05937 * 6 5 4 22 22 C 1.52997 * 109.46520 * 270.02956 * 3 2 1 23 23 H 1.08995 * 109.46823 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46934 * 300.00386 * 1 2 3 25 25 H 1.09003 * 109.46624 * 60.00129 * 1 2 3 26 26 H 1.08998 * 109.46632 * 30.00784 * 3 2 1 27 27 H 1.09001 * 109.47707 * 59.98348 * 4 3 2 28 28 H 1.08999 * 109.47484 * 299.97990 * 4 3 2 29 29 H 1.08997 * 109.48036 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.47424 * 59.99455 * 5 4 3 31 31 H 1.09005 * 109.45319 * 177.57431 * 7 6 5 32 32 H 1.09004 * 109.60508 * 57.38465 * 7 6 5 33 33 H 1.09002 * 109.54888 * 183.24113 * 8 7 6 34 34 H 1.08999 * 109.54457 * 63.05885 * 8 7 6 35 35 H 1.09001 * 109.51933 * 176.86624 * 9 8 7 36 36 H 1.09006 * 109.52201 * 297.04753 * 9 8 7 37 37 H 0.96998 * 119.99529 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.46954 * 59.93042 * 21 6 5 39 39 H 1.08998 * 109.47430 * 179.97438 * 21 6 5 40 40 H 1.08998 * 109.47411 * 300.01657 * 22 3 2 41 41 H 1.08993 * 109.47188 * 60.02163 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2631 0.7213 5 6 3.9816 2.6608 0.7207 6 6 4.1887 3.1255 -0.7221 7 6 5.1192 2.1457 -1.4419 8 6 6.4871 2.1530 -0.7527 9 6 7.0375 3.5825 -0.7464 10 6 6.0324 4.5050 -0.0519 11 1 5.9095 4.1934 0.9853 12 6 6.5398 5.9234 -0.0939 13 1 7.4846 6.1451 -0.5679 14 6 5.7980 6.9380 0.4728 15 7 4.6477 6.6679 1.0505 16 14 6.4272 8.6961 0.4215 17 1 5.9360 9.3619 -0.8116 18 1 5.9340 9.4335 1.6123 19 1 7.9122 8.6905 0.4229 20 8 4.7739 4.4289 -0.7246 21 6 2.8398 3.1690 -1.4428 22 6 2.2170 1.7715 -1.4425 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.3450 1.9993 0.5140 27 1 4.0241 0.5690 0.2077 28 1 3.2111 0.9316 1.7490 29 1 4.9426 2.6308 1.2342 30 1 3.3165 3.3552 1.2342 31 1 5.2337 2.4512 -2.4820 32 1 4.6959 1.1420 -1.4007 33 1 7.1721 1.5008 -1.2946 34 1 6.3807 1.7987 0.2726 35 1 7.9852 3.6055 -0.2085 36 1 7.1915 3.9180 -1.7721 37 1 4.1257 7.3818 1.4488 38 1 2.1753 3.8631 -0.9283 39 1 2.9874 3.5006 -2.4705 40 1 2.8817 1.0775 -1.9569 41 1 1.2559 1.8020 -1.9557 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390500352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:24 Heat of formation + Delta-G solvation = -131.806777 kcal Electronic energy + Delta-G solvation = -20570.098497 eV Core-core repulsion = 17641.331298 eV Total energy + Delta-G solvation = -2928.767199 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.36390 -39.10491 -36.55919 -34.49100 -34.12447 -31.93653 -31.29815 -28.77225 -27.25457 -26.57584 -24.02044 -23.76882 -22.86437 -21.31122 -19.19909 -18.60537 -17.67829 -17.19703 -16.67317 -16.28816 -16.04500 -15.95792 -15.29913 -15.14089 -14.66140 -14.25192 -14.07632 -13.75375 -13.51788 -13.21582 -13.05179 -12.92423 -12.79467 -12.57295 -12.41023 -12.20939 -12.08298 -12.02361 -11.98637 -11.64654 -11.46032 -11.19589 -11.04326 -10.75518 -10.48856 -10.21960 -9.54805 -8.11756 -6.31022 1.40670 1.42064 1.52136 2.41908 2.76625 3.06991 3.59052 3.75072 3.79367 4.08278 4.13274 4.14272 4.26891 4.30338 4.40218 4.49712 4.53730 4.55397 4.57526 4.64586 4.72855 4.80920 4.86350 4.89136 4.92565 4.98505 5.08702 5.12669 5.19646 5.20884 5.24232 5.31174 5.35912 5.54060 5.56752 5.64270 5.85176 6.27783 6.29457 6.71900 7.31999 7.45738 8.95382 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.030766 B = 0.006234 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.866824 B = 4490.587350 C = 4964.550245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.400 6.400 3 C 0.093 3.907 4 C -0.104 4.104 5 C -0.125 4.125 6 C 0.102 3.898 7 C -0.134 4.134 8 C -0.116 4.116 9 C -0.139 4.139 10 C 0.219 3.781 11 H -0.011 1.011 12 C -0.555 4.555 13 H 0.060 0.940 14 C 0.028 3.972 15 N -0.893 5.893 16 Si 0.957 3.043 17 H -0.277 1.277 18 H -0.280 1.280 19 H -0.264 1.264 20 O -0.382 6.382 21 C -0.096 4.096 22 C -0.124 4.124 23 H 0.102 0.898 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.260 0.740 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.940 -12.570 -3.017 14.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.036 3.964 4 C -0.142 4.142 5 C -0.163 4.163 6 C 0.062 3.938 7 C -0.171 4.171 8 C -0.154 4.154 9 C -0.177 4.177 10 C 0.163 3.837 11 H 0.007 0.993 12 C -0.592 4.592 13 H 0.078 0.922 14 C -0.175 4.175 15 N -0.530 5.530 16 Si 0.782 3.218 17 H -0.203 1.203 18 H -0.206 1.206 19 H -0.188 1.188 20 O -0.302 6.302 21 C -0.134 4.134 22 C -0.161 4.161 23 H 0.120 0.880 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.061 -12.512 -3.002 14.223 hybrid contribution 0.160 1.431 0.349 1.482 sum -5.902 -11.080 -2.653 12.831 Atomic orbital electron populations 1.22977 0.79922 1.03827 1.00561 1.87853 1.21098 1.27808 1.95204 1.22084 0.94617 0.84105 0.95624 1.21525 0.95563 0.96151 1.00936 1.21892 1.00306 0.96205 0.97868 1.21462 0.93225 0.85434 0.93672 1.22192 0.95626 1.00048 0.99265 1.21626 0.96868 0.96073 1.00799 1.22134 0.99250 0.95961 1.00378 1.19491 0.80703 0.93667 0.89828 0.99333 1.21478 1.05714 0.93637 1.38367 0.92203 1.25862 0.94721 1.03174 0.93750 1.70173 1.13259 1.33465 1.36087 0.85597 0.78997 0.79625 0.77615 1.20277 1.20556 1.18813 1.88239 1.37403 1.27497 1.77016 1.21329 0.94620 0.97182 1.00242 1.21934 1.01715 0.95369 0.97125 0.87986 0.93801 0.93337 0.92644 0.90079 0.91191 0.92480 0.94115 0.92270 0.89190 0.90311 0.92202 0.92364 0.93349 0.93154 0.93380 0.91651 0.90055 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.82 113.37 1.23 1.65 16 2 O -0.40 -10.16 10.35 -148.98 -1.54 -11.70 16 3 C 0.09 2.56 2.61 30.59 0.08 2.64 16 4 C -0.10 -3.10 5.30 30.60 0.16 -2.93 16 5 C -0.12 -4.79 4.20 30.60 0.13 -4.66 16 6 C 0.10 4.06 0.86 -10.76 -0.01 4.05 16 7 C -0.13 -4.49 4.20 30.69 0.13 -4.36 16 8 C -0.12 -3.98 5.71 30.71 0.18 -3.81 16 9 C -0.14 -5.97 5.36 30.68 0.16 -5.81 16 10 C 0.22 11.53 2.17 29.88 0.06 11.60 16 11 H -0.01 -0.62 6.35 -2.39 -0.02 -0.63 16 12 C -0.55 -32.08 8.79 25.60 0.23 -31.85 16 13 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 14 C 0.03 1.58 5.40 84.65 0.46 2.04 16 15 N -0.89 -53.80 12.84 21.45 0.28 -53.52 16 16 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 20 O -0.38 -19.97 9.27 -148.98 -1.38 -21.36 16 21 C -0.10 -3.34 5.11 30.59 0.16 -3.18 16 22 C -0.12 -3.31 5.26 30.59 0.16 -3.15 16 23 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.04 0.77 8.08 -2.39 -0.02 0.75 16 25 H 0.05 0.81 7.87 -2.39 -0.02 0.79 16 26 H 0.06 1.56 7.79 -2.39 -0.02 1.55 16 27 H 0.08 2.24 6.36 -2.39 -0.02 2.23 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 2.35 4.98 -2.39 -0.01 2.33 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.09 2.53 4.80 -2.38 -0.01 2.51 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.06 2.02 6.62 -2.39 -0.02 2.00 16 35 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.08 2.05 6.48 -2.39 -0.02 2.04 16 41 H 0.08 1.83 7.87 -2.39 -0.02 1.81 16 Total: -1.00 -65.71 305.62 3.49 -62.22 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.99 Total: 15.50 kcal Atomic # 6 Polarization: -40.90 SS G_CDS: 3.12 Total: -37.78 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.28 Total: -53.52 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -2.92 Total: -33.06 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -65.71 3.49 -62.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390500352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.589 kcal (2) G-P(sol) polarization free energy of solvation -65.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds