Wall clock time and date at job start Mon Mar 30 2020 06:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47153 * 2 1 4 4 H 1.08998 * 109.48299 * 305.03441 * 3 2 1 5 5 C 1.53103 * 109.48395 * 185.00149 * 3 2 1 6 6 C 1.53121 * 109.14790 * 182.47044 * 5 3 2 7 7 C 1.53027 * 109.45456 * 297.09560 * 6 5 3 8 8 C 1.53194 * 109.14472 * 297.39600 * 7 6 5 9 9 C 1.53174 * 109.02252 * 303.10327 * 8 7 6 10 10 C 1.53089 * 109.19514 * 56.99783 * 9 8 7 11 11 H 1.08998 * 109.48350 * 62.36608 * 10 9 8 12 12 C 1.50707 * 109.48000 * 182.40052 * 10 9 8 13 13 H 1.07999 * 119.99603 * 359.94198 * 12 10 9 14 14 C 1.37871 * 120.00056 * 179.97438 * 12 10 9 15 15 N 1.31512 * 120.00208 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00204 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46794 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.47000 * 119.99921 * 16 14 12 19 19 H 1.48501 * 109.47244 * 240.00331 * 16 14 12 20 20 O 1.42811 * 109.54573 * 176.94691 * 6 5 3 21 21 C 1.53089 * 109.16011 * 56.91980 * 6 5 3 22 22 C 1.53114 * 109.15462 * 303.09429 * 21 6 5 23 23 O 1.42908 * 109.41627 * 57.51057 * 22 21 6 24 24 H 1.09001 * 109.46904 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46742 * 299.99957 * 1 2 3 26 26 H 1.08993 * 109.47126 * 59.99862 * 1 2 3 27 27 H 1.08995 * 109.46754 * 239.99977 * 2 1 3 28 28 H 1.08998 * 109.46871 * 119.99715 * 2 1 3 29 29 H 1.09004 * 109.52538 * 62.56640 * 5 3 2 30 30 H 1.09004 * 109.52367 * 302.37130 * 5 3 2 31 31 H 1.08997 * 109.52962 * 57.29714 * 7 6 5 32 32 H 1.09003 * 109.52344 * 177.49986 * 7 6 5 33 33 H 1.09005 * 109.54499 * 183.24221 * 8 7 6 34 34 H 1.08995 * 109.62278 * 63.01440 * 8 7 6 35 35 H 1.08999 * 109.52081 * 297.07990 * 9 8 7 36 36 H 1.09006 * 109.55988 * 176.93686 * 9 8 7 37 37 H 0.96999 * 120.00307 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.52107 * 183.19491 * 21 6 5 39 39 H 1.08999 * 109.52975 * 63.00005 * 21 6 5 40 40 H 1.09002 * 109.48324 * 177.49725 * 22 21 6 41 41 H 1.08999 * 109.48354 * 297.52616 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6051 1.9819 -0.8414 5 6 3.5659 1.4447 -0.1258 6 6 4.0730 2.8881 -0.0630 7 6 3.5186 3.6753 -1.2524 8 6 4.0447 3.0585 -2.5522 9 6 5.5761 3.0538 -2.5186 10 6 6.0499 2.2891 -1.2799 11 1 5.7174 1.2530 -1.3430 12 6 7.5547 2.3308 -1.2087 13 1 8.1172 2.8497 -1.9708 14 6 8.2134 1.7060 -0.1711 15 7 7.5285 1.0732 0.7563 16 14 10.0786 1.7583 -0.0824 17 1 10.6076 2.5280 -1.2370 18 1 10.4957 2.4149 1.1825 19 1 10.6150 0.3741 -0.1220 20 8 5.5004 2.8955 -0.1082 21 6 3.5969 3.5315 1.2420 22 6 2.0698 3.4484 1.3152 23 8 1.6634 2.0815 1.2215 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8536 0.9986 -1.0779 30 1 3.9998 0.8701 0.6926 31 1 2.4296 3.6311 -1.2428 32 1 3.8426 4.7139 -1.1847 33 1 3.7004 3.6489 -3.4015 34 1 3.6788 2.0362 -2.6466 35 1 5.9426 4.0794 -2.4757 36 1 5.9593 2.5673 -3.4156 37 1 7.9919 0.6340 1.4866 38 1 3.9065 4.5764 1.2670 39 1 4.0317 3.0015 2.0894 40 1 1.7281 3.8651 2.2627 41 1 1.6350 4.0142 0.4913 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390633839.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:50 Heat of formation + Delta-G solvation = -115.180567 kcal Electronic energy + Delta-G solvation = -20762.526451 eV Core-core repulsion = 17834.480218 eV Total energy + Delta-G solvation = -2928.046232 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.04359 -37.35518 -33.83504 -33.20091 -32.48298 -31.62795 -29.46888 -28.12233 -25.22832 -23.98531 -23.43516 -22.16077 -20.97489 -20.04333 -17.81666 -16.60102 -16.09602 -15.96237 -14.92452 -14.53818 -14.40786 -14.09883 -13.92065 -13.65866 -13.52136 -12.96613 -12.72082 -12.29965 -11.94908 -11.84914 -11.47379 -11.27771 -11.15087 -10.94421 -10.89890 -10.72179 -10.65067 -10.54291 -10.39855 -10.32775 -9.94913 -9.59946 -9.36791 -9.20425 -8.69816 -8.44572 -7.79664 -5.99792 -4.11612 3.30236 3.38419 3.41926 4.07594 4.42561 4.83536 4.97979 5.22571 5.32258 5.36282 5.37455 5.45994 5.52255 5.57317 5.58480 5.69755 5.80199 5.87166 5.92291 6.06359 6.07082 6.09658 6.19145 6.24813 6.29114 6.35031 6.42258 6.47240 6.59816 6.62152 6.72748 6.84990 6.90335 6.99087 7.08272 7.53920 7.58846 7.91268 8.30766 8.80533 9.16827 9.58424 11.07461 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.026444 B = 0.006734 C = 0.006441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.572288 B = 4157.044199 C = 4345.828025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.093 3.907 4 H 0.054 0.946 5 C -0.165 4.165 6 C 0.116 3.884 7 C -0.143 4.143 8 C -0.121 4.121 9 C -0.144 4.144 10 C 0.218 3.782 11 H 0.018 0.982 12 C -0.527 4.527 13 H 0.063 0.937 14 C 0.078 3.922 15 N -0.858 5.858 16 Si 0.890 3.110 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 O -0.344 6.344 21 C -0.139 4.139 22 C 0.067 3.933 23 O -0.381 6.381 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.259 0.741 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.101 1.518 -1.788 12.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.035 3.965 4 H 0.071 0.929 5 C -0.203 4.203 6 C 0.075 3.925 7 C -0.181 4.181 8 C -0.158 4.158 9 C -0.182 4.182 10 C 0.163 3.837 11 H 0.035 0.965 12 C -0.565 4.565 13 H 0.081 0.919 14 C -0.128 4.128 15 N -0.494 5.494 16 Si 0.717 3.283 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 O -0.263 6.263 21 C -0.177 4.177 22 C -0.010 4.010 23 O -0.301 6.301 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.072 1.392 -1.341 12.226 hybrid contribution 1.080 0.122 -0.316 1.132 sum -10.993 1.514 -1.657 11.219 Atomic orbital electron populations 1.21717 0.95765 1.01048 1.01929 1.21550 0.96003 0.95054 1.02823 1.22185 0.94497 0.93267 0.86533 0.92856 1.22749 0.94424 0.99295 1.03829 1.21043 0.86601 0.92324 0.92514 1.22257 0.99185 1.00241 0.96385 1.21645 0.97785 1.00020 0.96361 1.22264 0.93174 1.01629 1.01170 1.19701 0.92924 0.90996 0.80108 0.96459 1.21045 0.89697 1.35303 1.10419 0.91900 1.25053 0.98176 0.94273 0.95260 1.70044 1.35068 1.32549 1.11733 0.86590 0.85851 0.77722 0.78111 1.19676 1.20879 1.20951 1.88379 1.13275 1.80144 1.44545 1.22094 0.95176 1.01670 0.98728 1.22548 0.94066 0.83157 1.01235 1.87844 1.78576 1.24674 1.38994 0.93127 0.92112 0.93237 0.90814 0.91088 0.90695 0.90131 0.92643 0.91909 0.93342 0.92532 0.92641 0.92601 0.93102 0.91053 0.90414 0.89289 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.81 37.16 0.36 -1.36 16 2 C -0.12 -1.62 5.64 -26.73 -0.15 -1.77 16 3 C 0.09 1.47 2.37 -26.68 -0.06 1.40 16 4 H 0.05 0.80 6.54 -51.93 -0.34 0.46 16 5 C -0.17 -3.18 3.64 -26.62 -0.10 -3.27 16 6 C 0.12 2.33 0.86 -90.50 -0.08 2.25 16 7 C -0.14 -2.50 4.35 -26.62 -0.12 -2.61 16 8 C -0.12 -2.13 5.72 -26.54 -0.15 -2.29 16 9 C -0.14 -3.07 5.35 -26.60 -0.14 -3.21 16 10 C 0.22 5.57 2.18 -27.83 -0.06 5.51 16 11 H 0.02 0.48 6.43 -51.93 -0.33 0.15 16 12 C -0.53 -14.83 8.79 -34.44 -0.30 -15.13 16 13 H 0.06 1.73 7.74 -52.49 -0.41 1.33 16 14 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 15 N -0.86 -25.16 12.84 55.43 0.71 -24.44 16 16 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 O -0.34 -8.80 9.28 -35.23 -0.33 -9.12 16 21 C -0.14 -2.49 5.29 -26.63 -0.14 -2.63 16 22 C 0.07 0.99 6.57 37.22 0.24 1.23 16 23 O -0.38 -6.25 9.94 -35.23 -0.35 -6.60 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.74 7.83 -51.93 -0.41 0.34 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.48 5.02 -51.93 -0.26 1.22 16 30 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 31 H 0.06 0.85 5.01 -51.93 -0.26 0.59 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.97 6.56 -51.93 -0.34 0.63 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.63 6.66 -51.93 -0.35 0.28 16 LS Contribution 306.70 15.07 4.62 4.62 Total: -1.00 -29.93 306.70 -8.06 -37.99 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.90 Total: 0.94 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -0.79 Total: -19.77 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.71 Total: -24.44 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.68 Total: -15.73 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.93 -8.06 -37.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390633839.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.191 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds