Wall clock time and date at job start Mon Mar 30 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46910 * 2 1 4 4 H 1.08992 * 109.49099 * 305.03504 * 3 2 1 5 5 C 1.53116 * 109.48156 * 184.99837 * 3 2 1 6 6 C 1.53090 * 109.15317 * 182.50612 * 5 3 2 7 7 C 1.53030 * 109.48992 * 297.09898 * 6 5 3 8 8 C 1.53191 * 109.14746 * 182.22627 * 7 6 5 9 9 C 1.53168 * 109.02169 * 56.89804 * 8 7 6 10 10 C 1.53096 * 109.19679 * 303.00403 * 9 8 7 11 11 H 1.09003 * 109.48119 * 297.63052 * 10 9 8 12 12 C 1.50701 * 109.48695 * 177.60224 * 10 9 8 13 13 H 1.07998 * 120.00178 * 0.05605 * 12 10 9 14 14 C 1.37887 * 119.99620 * 180.02562 * 12 10 9 15 15 N 1.31512 * 120.00104 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99749 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47117 * 90.00258 * 16 14 12 18 18 H 1.48498 * 109.47129 * 209.99883 * 16 14 12 19 19 H 1.48500 * 109.47212 * 330.00279 * 16 14 12 20 20 O 1.42804 * 109.61123 * 176.89412 * 6 5 3 21 21 C 1.53111 * 109.16245 * 56.90381 * 6 5 3 22 22 C 1.53111 * 109.15133 * 303.07985 * 21 6 5 23 23 O 1.42901 * 109.48100 * 65.06750 * 3 2 1 24 24 H 1.08998 * 109.47041 * 60.00041 * 1 2 3 25 25 H 1.09004 * 109.46725 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47127 * 299.99486 * 1 2 3 27 27 H 1.08999 * 109.47137 * 239.99958 * 2 1 3 28 28 H 1.09006 * 109.47497 * 119.99519 * 2 1 3 29 29 H 1.09002 * 109.52229 * 302.40983 * 5 3 2 30 30 H 1.08999 * 109.51892 * 62.53730 * 5 3 2 31 31 H 1.08995 * 109.52536 * 302.12618 * 7 6 5 32 32 H 1.09007 * 109.52718 * 62.32190 * 7 6 5 33 33 H 1.09004 * 109.54121 * 297.03275 * 8 7 6 34 34 H 1.09001 * 109.62028 * 176.80937 * 8 7 6 35 35 H 1.08999 * 109.51514 * 183.09340 * 9 8 7 36 36 H 1.08991 * 109.51649 * 62.91712 * 9 8 7 37 37 H 0.97001 * 119.99921 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.52507 * 62.98009 * 21 6 5 39 39 H 1.08997 * 109.52960 * 183.11507 * 21 6 5 40 40 H 1.08996 * 109.48915 * 177.51146 * 22 21 6 41 41 H 1.09000 * 109.48501 * 297.55109 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6051 1.9820 -0.8413 5 6 3.5660 1.4447 -0.1258 6 6 4.0731 2.8878 -0.0620 7 6 3.5193 3.6766 -1.2507 8 6 4.0758 5.1032 -1.2101 9 6 5.6063 5.0423 -1.2127 10 6 6.0786 4.2010 -0.0240 11 1 5.7683 4.6785 0.9054 12 6 7.5810 4.0877 -0.0537 13 1 8.1434 4.5682 -0.8407 14 6 8.2378 3.3711 0.9242 15 7 7.5530 2.7861 1.8826 16 14 10.1001 3.2300 0.8870 17 1 10.6969 4.3511 1.6567 18 1 10.5109 1.9387 1.4944 19 1 10.5730 3.2883 -0.5194 20 8 5.5005 2.8965 -0.1059 21 6 3.5967 3.5308 1.2433 22 6 2.0696 3.4481 1.3158 23 8 1.6634 2.0812 1.2216 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 3.9997 0.8697 0.6923 30 1 3.8536 0.9981 -1.0776 31 1 3.8209 3.1942 -2.1804 32 1 2.4312 3.7081 -1.1918 33 1 3.7321 5.6030 -0.3044 34 1 3.7313 5.6555 -2.0844 35 1 6.0109 6.0509 -1.1285 36 1 5.9510 4.5869 -2.1409 37 1 8.0151 2.2823 2.5707 38 1 4.0309 2.9999 2.0905 39 1 3.9076 4.5751 1.2697 40 1 1.7274 3.8646 2.2631 41 1 1.6353 4.0142 0.4917 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390633840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:53 Heat of formation + Delta-G solvation = -115.162609 kcal Electronic energy + Delta-G solvation = -20658.782909 eV Core-core repulsion = 17730.737456 eV Total energy + Delta-G solvation = -2928.045454 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.03018 -37.42458 -33.78221 -33.22642 -32.48812 -31.58936 -29.57763 -28.09559 -25.25250 -24.08628 -23.23577 -22.16893 -21.12902 -20.02998 -17.78143 -16.59086 -16.11523 -16.00413 -14.89875 -14.60270 -14.42470 -13.96578 -13.88301 -13.77028 -13.51099 -13.08040 -12.62456 -12.46971 -11.97188 -11.75397 -11.48216 -11.26281 -11.18987 -10.93434 -10.89841 -10.83513 -10.67900 -10.48512 -10.40883 -10.31186 -9.94492 -9.61458 -9.38532 -9.19690 -8.71668 -8.44340 -7.79684 -5.99737 -4.11623 3.30910 3.38053 3.41394 4.06658 4.42498 4.70033 5.12519 5.17695 5.27905 5.33918 5.38500 5.46301 5.49776 5.55798 5.61865 5.66926 5.78496 5.85413 5.90058 5.98465 6.06366 6.08752 6.20041 6.22364 6.27297 6.34709 6.36672 6.47443 6.59244 6.61645 6.73140 6.84881 6.89982 6.99206 7.08077 7.53592 7.58274 7.91198 8.30750 8.80331 9.16807 9.58352 11.07523 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.028165 B = 0.006551 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.891479 B = 4273.200853 C = 4719.380921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.094 3.906 4 H 0.055 0.945 5 C -0.132 4.132 6 C 0.117 3.883 7 C -0.143 4.143 8 C -0.121 4.121 9 C -0.144 4.144 10 C 0.218 3.782 11 H 0.018 0.982 12 C -0.528 4.528 13 H 0.062 0.938 14 C 0.079 3.921 15 N -0.858 5.858 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 O -0.344 6.344 21 C -0.173 4.173 22 C 0.065 3.935 23 O -0.381 6.381 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.260 0.740 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.144 -1.048 -3.457 12.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.037 3.963 4 H 0.073 0.927 5 C -0.170 4.170 6 C 0.076 3.924 7 C -0.181 4.181 8 C -0.158 4.158 9 C -0.182 4.182 10 C 0.163 3.837 11 H 0.035 0.965 12 C -0.566 4.566 13 H 0.081 0.919 14 C -0.127 4.127 15 N -0.494 5.494 16 Si 0.718 3.282 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.198 1.198 20 O -0.263 6.263 21 C -0.211 4.211 22 C -0.012 4.012 23 O -0.301 6.301 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.120 -1.423 -3.167 12.608 hybrid contribution 1.084 0.340 -0.185 1.152 sum -11.036 -1.083 -3.352 11.584 Atomic orbital electron populations 1.21713 0.95637 1.01098 1.02061 1.21546 0.96185 0.94881 1.02767 1.22133 0.93785 0.93460 0.86964 0.92716 1.22106 0.94472 0.97138 1.03236 1.21031 0.86616 0.93092 0.91682 1.22258 0.99118 0.96904 0.99794 1.21647 0.97723 0.95986 1.00465 1.22263 0.93183 1.00814 1.01979 1.19696 0.92574 0.80509 0.90919 0.96480 1.21008 0.89750 1.34547 1.11255 0.91949 1.25054 0.98158 0.94498 0.95020 1.70035 1.35191 1.31597 1.12592 0.86642 0.85789 0.77466 0.78330 1.20593 1.21113 1.19788 1.88377 1.12986 1.31664 1.93318 1.22733 0.95103 1.02764 1.00488 1.22592 0.94826 0.82716 1.01064 1.87845 1.78585 1.24978 1.38645 0.93173 0.93084 0.92026 0.90782 0.91060 0.90429 0.91129 0.91914 0.92641 0.92535 0.93328 0.92603 0.92628 0.93037 0.90107 0.90626 0.89555 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.81 37.16 0.36 -1.26 16 2 C -0.12 -1.48 5.64 -26.73 -0.15 -1.63 16 3 C 0.09 1.42 2.37 -26.67 -0.06 1.36 16 4 H 0.05 0.78 6.66 -51.93 -0.35 0.44 16 5 C -0.13 -2.38 4.57 -26.62 -0.12 -2.50 16 6 C 0.12 2.35 0.86 -90.50 -0.08 2.27 16 7 C -0.14 -2.50 4.35 -26.62 -0.12 -2.62 16 8 C -0.12 -2.13 5.72 -26.55 -0.15 -2.29 16 9 C -0.14 -3.07 5.35 -26.59 -0.14 -3.21 16 10 C 0.22 5.58 2.18 -27.83 -0.06 5.52 16 11 H 0.02 0.48 6.43 -51.93 -0.33 0.14 16 12 C -0.53 -14.87 8.80 -34.44 -0.30 -15.18 16 13 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 14 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 15 N -0.86 -25.21 12.84 55.43 0.71 -24.50 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 O -0.34 -8.81 9.27 -35.23 -0.33 -9.13 16 21 C -0.17 -3.33 4.36 -26.62 -0.12 -3.44 16 22 C 0.06 1.01 6.57 37.21 0.24 1.26 16 23 O -0.38 -6.26 9.94 -35.23 -0.35 -6.61 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.73 7.83 -51.93 -0.41 0.32 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.85 5.01 -51.92 -0.26 0.59 16 33 H 0.06 0.97 6.56 -51.93 -0.34 0.63 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 39 H 0.08 1.48 5.02 -51.93 -0.26 1.22 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 LS Contribution 306.69 15.07 4.62 4.62 Total: -1.00 -29.94 306.69 -8.06 -37.99 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.90 Total: 0.81 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -0.79 Total: -19.59 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.71 Total: -24.50 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.68 Total: -15.74 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.94 -8.06 -37.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390633840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.169 kcal (2) G-P(sol) polarization free energy of solvation -29.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds