Wall clock time and date at job start Mon Mar 30 2020 06:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47553 * 2 1 4 4 C 1.42898 * 114.00165 * 184.91503 * 3 2 1 5 5 H 1.08998 * 109.47331 * 333.68842 * 4 3 2 6 6 C 1.53006 * 109.46894 * 213.69009 * 4 3 2 7 7 O 1.42897 * 109.47113 * 295.31676 * 6 4 3 8 8 C 1.42903 * 113.99873 * 184.93263 * 7 6 4 9 9 C 1.52997 * 109.47169 * 184.93711 * 8 7 6 10 10 C 1.50706 * 115.54933 * 65.25704 * 9 8 7 11 11 H 1.08001 * 119.99651 * 272.82444 * 10 9 8 12 12 C 1.37873 * 119.99912 * 92.54902 * 10 9 8 13 13 N 1.31516 * 120.00024 * 173.62925 * 12 10 9 14 14 Si 1.86802 * 120.00148 * 353.62571 * 12 10 9 15 15 H 1.48496 * 109.46733 * 94.33347 * 14 12 10 16 16 H 1.48499 * 109.47089 * 214.33014 * 14 12 10 17 17 H 1.48497 * 109.46999 * 334.33091 * 14 12 10 18 18 C 1.52993 * 117.50072 * 210.92391 * 9 8 7 19 19 C 1.53000 * 117.50197 * 279.58869 * 9 8 7 20 20 C 1.53000 * 109.47276 * 93.69271 * 4 3 2 21 21 C 1.53003 * 117.49691 * 254.51485 * 20 4 3 22 22 C 1.53002 * 117.49949 * 185.85541 * 20 4 3 23 23 H 1.09000 * 109.47122 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46982 * 300.00035 * 1 2 3 25 25 H 1.08997 * 109.47051 * 59.99968 * 1 2 3 26 26 H 1.09002 * 109.47397 * 239.99373 * 2 1 3 27 27 H 1.09006 * 109.46885 * 120.00204 * 2 1 3 28 28 H 1.08997 * 109.46930 * 175.31684 * 6 4 3 29 29 H 1.09002 * 109.47159 * 55.31887 * 6 4 3 30 30 H 1.08999 * 109.46854 * 64.93789 * 8 7 6 31 31 H 1.08998 * 109.47238 * 304.94094 * 8 7 6 32 32 H 0.96996 * 120.00597 * 174.99279 * 13 12 10 33 33 H 1.09000 * 117.50701 * 215.00167 * 18 9 8 34 34 H 1.09006 * 117.49664 * 0.02866 * 18 9 8 35 35 H 1.09004 * 117.49440 * 359.96923 * 19 9 8 36 36 H 1.08993 * 117.50666 * 144.97545 * 19 9 8 37 37 H 1.08995 * 115.54824 * 40.18478 * 20 4 3 38 38 H 1.08995 * 117.49790 * 359.97438 * 21 20 4 39 39 H 1.08996 * 117.49355 * 145.01851 * 21 20 4 40 40 H 1.08994 * 117.49716 * 214.97671 * 22 20 4 41 41 H 1.09004 * 117.49698 * 359.97438 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4264 1.4616 -0.1118 5 1 3.8957 0.5598 0.2814 6 6 3.9048 2.6755 0.6873 7 8 3.3760 3.8681 0.1043 8 6 3.8528 5.0717 0.7093 9 6 3.1326 6.2725 0.0927 10 6 1.6507 6.3473 0.3564 11 1 0.9592 5.8394 -0.2997 12 6 1.1781 7.0593 1.4383 13 7 -0.1160 7.2301 1.5986 14 14 2.3759 7.7813 2.6767 15 1 2.6751 9.1895 2.3127 16 1 1.7720 7.7381 4.0326 17 1 3.6326 6.9902 2.6690 18 6 3.9027 7.5919 0.0096 19 6 3.6358 6.7798 -1.2602 20 6 3.8098 1.6361 -1.5827 21 6 4.4309 0.4347 -2.2982 22 6 5.3001 1.6394 -1.9288 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 4.9939 2.7150 0.6709 29 1 3.5598 2.5910 1.7179 30 1 4.9253 5.1642 0.5382 31 1 3.6572 5.0418 1.7812 32 1 -0.4525 7.6675 2.3963 33 1 3.3377 8.5140 0.1456 34 1 4.9227 7.6043 0.3939 35 1 4.4804 6.2583 -1.7107 36 1 2.8952 7.1673 -1.9597 37 1 3.1565 2.2860 -2.1648 38 1 4.5669 -0.4797 -1.7209 39 1 4.1866 0.2946 -3.3511 40 1 5.6272 2.2912 -2.7388 41 1 6.0075 1.5177 -1.1084 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703553280.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:53 Heat of formation + Delta-G solvation = -42.519576 kcal Electronic energy + Delta-G solvation = -19582.373734 eV Core-core repulsion = 16657.478319 eV Total energy + Delta-G solvation = -2924.895415 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.98449 -37.45468 -36.27618 -35.57226 -31.94235 -31.42122 -28.92556 -26.31943 -24.81782 -23.44003 -22.68403 -22.23977 -21.53797 -20.06847 -18.93596 -17.10687 -16.40871 -15.94190 -15.23876 -15.17555 -14.74144 -14.63305 -14.51816 -13.87721 -13.60704 -12.72112 -12.57410 -12.42109 -12.31880 -11.82141 -11.74214 -11.53353 -11.44212 -11.07718 -10.98161 -10.89466 -10.58163 -10.37810 -10.30007 -9.93961 -9.90691 -9.53868 -9.24683 -9.12575 -8.63137 -8.46514 -8.34479 -5.97989 -3.97296 3.34377 3.43328 3.47195 3.72666 3.92581 4.24270 4.51828 4.73859 4.89350 5.06091 5.08013 5.18747 5.23914 5.29250 5.39579 5.45909 5.52355 5.59973 5.61240 5.70606 5.83937 5.91219 5.93423 6.02807 6.08587 6.11121 6.14898 6.17283 6.28323 6.33055 6.43078 6.46878 6.54136 6.81738 7.14028 7.25348 7.48547 7.86295 8.07725 8.67924 9.10882 9.65451 11.14769 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.020295 B = 0.006483 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.298968 B = 4317.676951 C = 5137.471286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.128 3.872 5 H 0.065 0.935 6 C 0.064 3.936 7 O -0.348 6.348 8 C 0.102 3.898 9 C 0.005 3.995 10 C -0.469 4.469 11 H 0.081 0.919 12 C 0.073 3.927 13 N -0.900 5.900 14 Si 0.877 3.123 15 H -0.280 1.280 16 H -0.295 1.295 17 H -0.263 1.263 18 C -0.199 4.199 19 C -0.174 4.174 20 C -0.155 4.155 21 C -0.189 4.189 22 C -0.172 4.172 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.019 0.981 31 H 0.042 0.958 32 H 0.262 0.738 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.574 -13.910 -3.292 17.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.069 3.931 5 H 0.083 0.917 6 C -0.013 4.013 7 O -0.267 6.267 8 C 0.025 3.975 9 C 0.004 3.996 10 C -0.506 4.506 11 H 0.099 0.901 12 C -0.128 4.128 13 N -0.539 5.539 14 Si 0.705 3.295 15 H -0.206 1.206 16 H -0.222 1.222 17 H -0.187 1.187 18 C -0.236 4.236 19 C -0.211 4.211 20 C -0.173 4.173 21 C -0.226 4.226 22 C -0.209 4.209 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.137 0.863 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.167 -13.609 -3.343 16.746 hybrid contribution 0.988 0.195 1.001 1.420 sum 10.155 -13.415 -2.341 16.987 Atomic orbital electron populations 1.21723 0.93830 1.01575 1.03729 1.22492 0.95820 0.84617 0.99246 1.88186 1.20239 1.25102 1.94064 1.21645 0.82438 0.96271 0.92704 0.91685 1.22475 0.96281 0.86324 0.96258 1.88075 1.68975 1.11893 1.57731 1.22300 0.93820 0.84969 0.96423 1.19293 0.95520 0.88678 0.96124 1.20266 0.87396 1.30439 1.12530 0.90144 1.24972 0.94859 0.95203 0.97724 1.69914 1.12472 1.43953 1.27515 0.86910 0.82122 0.79830 0.80626 1.20621 1.22178 1.18726 1.22959 0.99508 0.97166 1.03994 1.22783 1.02034 1.04630 0.91697 1.22726 0.96409 1.01087 0.97104 1.23048 1.05617 0.92774 1.01192 1.22839 0.93507 1.01171 1.03377 0.91658 0.91596 0.91649 0.93705 0.94050 0.93268 0.93294 0.96263 0.93937 0.92777 0.89195 0.91066 0.91027 0.89545 0.86311 0.89368 0.88946 0.88653 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 37.16 0.38 -1.47 16 2 C 0.06 0.71 6.45 37.16 0.24 0.95 16 3 O -0.36 -6.18 9.94 -40.41 -0.40 -6.58 16 4 C 0.13 1.90 2.72 -26.73 -0.07 1.83 16 5 H 0.07 0.79 7.59 -51.93 -0.39 0.39 16 6 C 0.06 1.08 5.66 37.16 0.21 1.29 16 7 O -0.35 -7.56 9.73 -40.41 -0.39 -7.96 16 8 C 0.10 2.25 5.44 37.16 0.20 2.45 16 9 C 0.00 0.12 1.06 -155.66 -0.17 -0.05 16 10 C -0.47 -13.75 9.37 -34.44 -0.32 -14.08 16 11 H 0.08 2.63 8.06 -52.49 -0.42 2.21 16 12 C 0.07 2.17 5.46 -17.82 -0.10 2.08 16 13 N -0.90 -28.24 13.95 55.43 0.77 -27.47 16 14 Si 0.88 22.19 24.79 -169.99 -4.21 17.98 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 17 H -0.26 -6.26 5.88 56.52 0.33 -5.93 16 18 C -0.20 -4.40 7.49 -26.70 -0.20 -4.60 16 19 C -0.17 -3.78 9.96 -26.69 -0.27 -4.04 16 20 C -0.15 -2.19 4.97 -90.62 -0.45 -2.64 16 21 C -0.19 -2.07 10.18 -26.69 -0.27 -2.34 16 22 C -0.17 -2.02 9.91 -26.69 -0.26 -2.28 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.71 7.88 -51.93 -0.41 0.30 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.02 0.38 8.09 -51.93 -0.42 -0.04 16 31 H 0.04 0.97 7.01 -51.93 -0.36 0.61 16 32 H 0.26 7.72 8.32 -40.82 -0.34 7.38 16 33 H 0.09 2.08 6.99 -51.93 -0.36 1.72 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 37 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 38 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.09 0.96 8.04 -51.93 -0.42 0.55 16 LS Contribution 335.21 15.07 5.05 5.05 Total: -1.00 -32.34 335.21 -7.75 -40.09 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.49 Total: 1.78 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -1.08 Total: -22.90 kcal Atomic # 7 Polarization: -28.24 SS G_CDS: 0.77 Total: -27.47 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.80 Total: -14.53 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.21 Total: 17.98 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.34 -7.75 -40.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703553280.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.433 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds