Wall clock time and date at job start Mon Mar 30 2020 06:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47553 * 2 1 4 4 C 1.42898 * 114.00165 * 184.91503 * 3 2 1 5 5 H 1.08998 * 109.47331 * 333.68842 * 4 3 2 6 6 C 1.53006 * 109.46894 * 213.69009 * 4 3 2 7 7 O 1.42897 * 109.47113 * 295.31676 * 6 4 3 8 8 C 1.42903 * 113.99873 * 184.93263 * 7 6 4 9 9 C 1.52997 * 109.47169 * 184.93711 * 8 7 6 10 10 C 1.50706 * 115.54933 * 65.25704 * 9 8 7 11 11 H 1.08001 * 119.99651 * 272.82444 * 10 9 8 12 12 C 1.37873 * 119.99912 * 92.54902 * 10 9 8 13 13 N 1.31516 * 120.00024 * 173.62925 * 12 10 9 14 14 Si 1.86802 * 120.00148 * 353.62571 * 12 10 9 15 15 H 1.48496 * 109.46733 * 94.33347 * 14 12 10 16 16 H 1.48499 * 109.47089 * 214.33014 * 14 12 10 17 17 H 1.48497 * 109.46999 * 334.33091 * 14 12 10 18 18 C 1.52993 * 117.50072 * 210.92391 * 9 8 7 19 19 C 1.53000 * 117.50197 * 279.58869 * 9 8 7 20 20 C 1.53000 * 109.47276 * 93.69271 * 4 3 2 21 21 C 1.53003 * 117.49691 * 254.51485 * 20 4 3 22 22 C 1.53002 * 117.49949 * 185.85541 * 20 4 3 23 23 H 1.09000 * 109.47122 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46982 * 300.00035 * 1 2 3 25 25 H 1.08997 * 109.47051 * 59.99968 * 1 2 3 26 26 H 1.09002 * 109.47397 * 239.99373 * 2 1 3 27 27 H 1.09006 * 109.46885 * 120.00204 * 2 1 3 28 28 H 1.08997 * 109.46930 * 175.31684 * 6 4 3 29 29 H 1.09002 * 109.47159 * 55.31887 * 6 4 3 30 30 H 1.08999 * 109.46854 * 64.93789 * 8 7 6 31 31 H 1.08998 * 109.47238 * 304.94094 * 8 7 6 32 32 H 0.96996 * 120.00597 * 174.99279 * 13 12 10 33 33 H 1.09000 * 117.50701 * 215.00167 * 18 9 8 34 34 H 1.09006 * 117.49664 * 0.02866 * 18 9 8 35 35 H 1.09004 * 117.49440 * 359.96923 * 19 9 8 36 36 H 1.08993 * 117.50666 * 144.97545 * 19 9 8 37 37 H 1.08995 * 115.54824 * 40.18478 * 20 4 3 38 38 H 1.08995 * 117.49790 * 359.97438 * 21 20 4 39 39 H 1.08996 * 117.49355 * 145.01851 * 21 20 4 40 40 H 1.08994 * 117.49716 * 214.97671 * 22 20 4 41 41 H 1.09004 * 117.49698 * 359.97438 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4264 1.4616 -0.1118 5 1 3.8957 0.5598 0.2814 6 6 3.9048 2.6755 0.6873 7 8 3.3760 3.8681 0.1043 8 6 3.8528 5.0717 0.7093 9 6 3.1326 6.2725 0.0927 10 6 1.6507 6.3473 0.3564 11 1 0.9592 5.8394 -0.2997 12 6 1.1781 7.0593 1.4383 13 7 -0.1160 7.2301 1.5986 14 14 2.3759 7.7813 2.6767 15 1 2.6751 9.1895 2.3127 16 1 1.7720 7.7381 4.0326 17 1 3.6326 6.9902 2.6690 18 6 3.9027 7.5919 0.0096 19 6 3.6358 6.7798 -1.2602 20 6 3.8098 1.6361 -1.5827 21 6 4.4309 0.4347 -2.2982 22 6 5.3001 1.6394 -1.9288 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 4.9939 2.7150 0.6709 29 1 3.5598 2.5910 1.7179 30 1 4.9253 5.1642 0.5382 31 1 3.6572 5.0418 1.7812 32 1 -0.4525 7.6675 2.3963 33 1 3.3377 8.5140 0.1456 34 1 4.9227 7.6043 0.3939 35 1 4.4804 6.2583 -1.7107 36 1 2.8952 7.1673 -1.9597 37 1 3.1565 2.2860 -2.1648 38 1 4.5669 -0.4797 -1.7209 39 1 4.1866 0.2946 -3.3511 40 1 5.6272 2.2912 -2.7388 41 1 6.0075 1.5177 -1.1084 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703553280.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:53 Heat of formation + Delta-G solvation = -63.344104 kcal Electronic energy + Delta-G solvation = -19583.276754 eV Core-core repulsion = 16657.478319 eV Total energy + Delta-G solvation = -2925.798435 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.16617 -39.09825 -37.40058 -37.09263 -34.19780 -32.48893 -30.17385 -28.21676 -26.76259 -24.61025 -23.69667 -23.29406 -23.10598 -21.19067 -20.88959 -18.47982 -18.17477 -17.25857 -16.99168 -16.51376 -16.17719 -15.99457 -15.77338 -15.39834 -14.82069 -14.74611 -14.27608 -13.66986 -13.47058 -13.17057 -13.14480 -13.02227 -12.77098 -12.37618 -12.31771 -12.16623 -12.06033 -12.00817 -11.83730 -11.52546 -11.28670 -10.97011 -10.88238 -10.62563 -10.39916 -10.31559 -10.16775 -8.26421 -6.31613 1.34724 1.36997 1.50753 2.38980 2.68205 2.78502 2.95627 3.07654 3.42701 3.75609 3.94127 4.06325 4.10593 4.19301 4.22187 4.33294 4.35896 4.39179 4.42984 4.50672 4.51434 4.62486 4.63871 4.71522 4.78165 4.83631 4.87019 4.90901 5.02088 5.06952 5.08534 5.25520 5.27281 5.34048 5.37882 5.49292 5.73623 6.32417 6.41718 6.63077 6.76879 7.35167 8.90895 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.020295 B = 0.006483 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.298968 B = 4317.676951 C = 5137.471286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.404 6.404 4 C 0.127 3.873 5 H 0.100 0.900 6 C 0.055 3.945 7 O -0.381 6.381 8 C 0.108 3.892 9 C -0.031 4.031 10 C -0.476 4.476 11 H 0.018 0.982 12 C 0.012 3.988 13 N -0.955 5.955 14 Si 0.945 3.055 15 H -0.265 1.265 16 H -0.296 1.296 17 H -0.232 1.232 18 C -0.182 4.182 19 C -0.163 4.163 20 C -0.183 4.183 21 C -0.166 4.166 22 C -0.163 4.163 23 H 0.098 0.902 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.029 0.971 32 H 0.264 0.736 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.469 -15.090 -2.783 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.324 6.324 4 C 0.070 3.930 5 H 0.118 0.882 6 C -0.022 4.022 7 O -0.300 6.300 8 C 0.031 3.969 9 C -0.032 4.032 10 C -0.514 4.514 11 H 0.036 0.964 12 C -0.184 4.184 13 N -0.596 5.596 14 Si 0.769 3.231 15 H -0.191 1.191 16 H -0.224 1.224 17 H -0.155 1.155 18 C -0.219 4.219 19 C -0.200 4.200 20 C -0.202 4.202 21 C -0.203 4.203 22 C -0.200 4.200 23 H 0.117 0.883 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.128 0.872 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 13.084 -14.807 -2.857 19.965 hybrid contribution -0.342 0.472 0.721 0.927 sum 12.742 -14.335 -2.136 19.298 Atomic orbital electron populations 1.21775 0.94070 1.03186 1.01894 1.22707 0.95765 0.83193 1.00966 1.88138 1.22009 1.27852 1.94361 1.21778 0.81611 0.96569 0.93047 0.88230 1.22812 0.98120 0.85283 0.95979 1.88049 1.70289 1.13202 1.58458 1.22120 0.95306 0.84279 0.95196 1.19267 0.93054 0.91623 0.99231 1.20379 0.89926 1.29467 1.11596 0.96398 1.25939 0.96749 0.95694 1.00005 1.70087 1.15124 1.45831 1.28514 0.85812 0.80518 0.79776 0.77035 1.19057 1.22368 1.15468 1.23015 1.00673 0.94943 1.03307 1.22796 1.02325 1.03998 0.90849 1.22492 0.97668 1.03380 0.96640 1.23142 1.03101 0.92641 1.01432 1.22951 0.91989 1.01326 1.03764 0.88292 0.93496 0.93400 0.91956 0.92027 0.90013 0.94164 0.92450 0.95286 0.92684 0.90596 0.87083 0.87763 0.91170 0.90433 0.87152 0.88394 0.88676 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 10.28 71.98 0.74 -3.03 16 2 C 0.05 1.24 6.45 71.98 0.46 1.70 16 3 O -0.40 -14.20 9.94 -144.03 -1.43 -15.63 16 4 C 0.13 3.64 2.72 30.60 0.08 3.72 16 5 H 0.10 2.08 7.59 -2.39 -0.02 2.07 16 6 C 0.05 1.78 5.66 71.98 0.41 2.18 16 7 O -0.38 -16.52 9.73 -144.03 -1.40 -17.93 16 8 C 0.11 4.56 5.44 71.98 0.39 4.96 16 9 C -0.03 -1.50 1.06 -52.93 -0.06 -1.55 16 10 C -0.48 -29.25 9.37 25.60 0.24 -29.01 16 11 H 0.02 1.27 8.06 -2.91 -0.02 1.24 16 12 C 0.01 0.73 5.46 84.65 0.46 1.20 16 13 N -0.95 -62.90 13.95 21.45 0.30 -62.60 16 14 Si 0.94 45.66 24.79 68.60 1.70 47.36 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 16 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 17 H -0.23 -10.00 5.88 99.48 0.59 -9.41 16 18 C -0.18 -7.51 7.49 30.62 0.23 -7.28 16 19 C -0.16 -6.80 9.96 30.62 0.30 -6.50 16 20 C -0.18 -4.99 4.97 -10.79 -0.05 -5.05 16 21 C -0.17 -3.15 10.18 30.62 0.31 -2.84 16 22 C -0.16 -3.36 9.91 30.62 0.30 -3.05 16 23 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.08 2.07 7.88 -2.39 -0.02 2.05 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.99 8.09 -2.39 -0.02 1.97 16 31 H 0.03 1.28 7.01 -2.39 -0.02 1.26 16 32 H 0.26 16.23 8.32 -92.71 -0.77 15.46 16 33 H 0.08 3.34 6.99 -2.39 -0.02 3.32 16 34 H 0.11 3.73 8.14 -2.38 -0.02 3.71 16 35 H 0.10 3.68 8.14 -2.38 -0.02 3.66 16 36 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.11 1.62 8.09 -2.39 -0.02 1.61 16 39 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.11 1.84 8.04 -2.38 -0.02 1.82 16 Total: -1.00 -75.87 335.21 3.84 -72.04 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.84 Total: 21.30 kcal Atomic # 6 Polarization: -48.38 SS G_CDS: 3.83 Total: -44.55 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: 0.30 Total: -62.60 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -2.83 Total: -33.56 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.70 Total: 47.36 kcal Total: -75.87 3.84 -72.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703553280.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.693 kcal (2) G-P(sol) polarization free energy of solvation -75.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds