Wall clock time and date at job start Mon Mar 30 2020 06:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47292 * 2 1 4 4 C 1.42898 * 114.00170 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47396 * 29.99440 * 4 3 2 6 6 C 1.52994 * 109.48088 * 269.97449 * 4 3 2 7 7 C 1.52989 * 109.53843 * 179.76688 * 6 4 3 8 8 C 1.53049 * 109.44958 * 60.24201 * 7 6 4 9 9 C 1.52773 * 109.46412 * 300.44960 * 8 7 6 10 10 C 1.53880 * 109.69506 * 180.21331 * 9 8 7 11 11 C 1.54867 * 104.10051 * 117.44895 * 10 9 8 12 12 C 1.55016 * 102.09679 * 339.14197 * 11 10 9 13 13 H 1.08996 * 110.61768 * 278.23325 * 12 11 10 14 14 C 1.50706 * 110.61197 * 155.40563 * 12 11 10 15 15 H 1.07998 * 119.99503 * 2.16880 * 14 12 11 16 16 C 1.37871 * 120.00434 * 182.16344 * 14 12 11 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 12 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 O 1.43675 * 109.68950 * 298.21688 * 9 8 7 23 23 C 1.52773 * 110.16403 * 59.33791 * 9 8 7 24 24 H 1.09004 * 109.47082 * 300.00100 * 1 2 3 25 25 H 1.08994 * 109.47193 * 59.99942 * 1 2 3 26 26 H 1.08993 * 109.47172 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47128 * 239.99965 * 2 1 3 28 28 H 1.08997 * 109.47004 * 119.99561 * 2 1 3 29 29 H 1.09000 * 109.46173 * 299.79352 * 6 4 3 30 30 H 1.09003 * 109.45587 * 59.76432 * 6 4 3 31 31 H 1.09008 * 109.47408 * 180.23587 * 7 6 4 32 32 H 1.09000 * 109.47952 * 300.24108 * 7 6 4 33 33 H 1.08999 * 109.47434 * 180.44763 * 8 7 6 34 34 H 1.09006 * 109.46920 * 60.43932 * 8 7 6 35 35 H 1.09003 * 110.50408 * 358.79364 * 10 9 8 36 36 H 1.09001 * 110.62235 * 236.15534 * 10 9 8 37 37 H 1.09001 * 110.90637 * 220.94899 * 11 10 9 38 38 H 1.08997 * 110.90648 * 97.34582 * 11 10 9 39 39 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 40 40 H 1.09001 * 109.46758 * 60.65936 * 23 9 8 41 41 H 1.09008 * 109.46877 * 180.66035 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6015 -0.5128 6 6 3.9389 1.5012 1.4431 7 6 5.4644 1.6162 1.4453 8 6 5.8796 2.9024 0.7273 9 6 5.3636 2.8721 -0.7104 10 6 5.7828 4.1610 -1.4391 11 6 6.6989 3.6655 -2.5852 12 6 7.1329 2.2682 -2.0732 13 1 7.9588 2.3576 -1.3675 14 6 7.5165 1.3764 -3.2259 15 1 7.4972 1.7602 -4.2352 16 6 7.8920 0.0706 -2.9921 17 7 7.9207 -0.3952 -1.7625 18 14 8.3681 -1.0346 -4.4208 19 1 8.7350 -2.3785 -3.9062 20 1 7.2200 -1.1586 -5.3546 21 1 9.5276 -0.4454 -5.1373 22 8 5.9514 1.7649 -1.4124 23 6 3.8412 2.7460 -0.7209 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.5090 2.3622 1.9551 30 1 3.6431 0.5874 1.9584 31 1 5.8255 1.6412 2.4736 32 1 5.8944 0.7573 0.9300 33 1 6.9668 2.9808 0.7216 34 1 5.4560 3.7617 1.2472 35 1 6.3343 4.8178 -0.7663 36 1 4.9104 4.6749 -1.8427 37 1 7.5615 4.3211 -2.7047 38 1 6.1430 3.5822 -3.5191 39 1 7.6738 0.1787 -1.0205 40 1 3.4020 3.6041 -0.2122 41 1 3.4864 2.7136 -1.7512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721208922.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:46 Heat of formation + Delta-G solvation = -125.338619 kcal Electronic energy + Delta-G solvation = -20386.747874 eV Core-core repulsion = 17458.261155 eV Total energy + Delta-G solvation = -2928.486719 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.70697 -37.78710 -35.14200 -32.66266 -31.35430 -31.18826 -29.77944 -28.71524 -25.86527 -23.22583 -22.60453 -22.20356 -20.96209 -20.14235 -18.79705 -17.05420 -16.38635 -15.48479 -15.35317 -14.86077 -14.34412 -13.99315 -13.71090 -13.47885 -13.41122 -13.04331 -12.65261 -12.56268 -12.04217 -11.78830 -11.64724 -11.44944 -11.23544 -11.10571 -10.80137 -10.68959 -10.62341 -10.52258 -10.33378 -10.18119 -10.06187 -9.75540 -9.68997 -9.06268 -8.73329 -8.51329 -8.11010 -6.36078 -4.13455 3.43783 3.46232 3.64435 3.88967 4.52560 4.80850 5.07451 5.16044 5.21569 5.28187 5.36223 5.46761 5.47555 5.53267 5.58345 5.60769 5.72347 5.77513 5.89690 5.94011 5.96328 6.02153 6.03915 6.10916 6.15869 6.27523 6.32317 6.42758 6.48617 6.54641 6.57231 6.69395 6.71939 6.84437 6.92027 7.30787 7.56247 8.07000 8.34204 8.51625 8.88361 9.67873 11.05367 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.018558 B = 0.007261 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.442856 B = 3855.392076 C = 4548.186654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.390 6.390 4 C 0.094 3.906 5 H 0.074 0.926 6 C -0.132 4.132 7 C -0.113 4.113 8 C -0.126 4.126 9 C 0.101 3.899 10 C -0.146 4.146 11 C -0.139 4.139 12 C 0.191 3.809 13 H 0.018 0.982 14 C -0.603 4.603 15 H 0.055 0.945 16 C 0.032 3.968 17 N -0.892 5.892 18 Si 1.067 2.933 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.287 1.287 22 O -0.357 6.357 23 C -0.097 4.097 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.279 0.721 40 H 0.067 0.933 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.096 4.353 5.256 11.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.310 6.310 4 C 0.036 3.964 5 H 0.092 0.908 6 C -0.170 4.170 7 C -0.150 4.150 8 C -0.164 4.164 9 C 0.060 3.940 10 C -0.184 4.184 11 C -0.177 4.177 12 C 0.137 3.863 13 H 0.035 0.965 14 C -0.641 4.641 15 H 0.073 0.927 16 C -0.176 4.176 17 N -0.527 5.527 18 Si 0.895 3.105 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.214 1.214 22 O -0.277 6.277 23 C -0.134 4.134 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.786 2.775 4.883 10.428 hybrid contribution -0.314 1.631 0.445 1.719 sum -9.100 4.405 5.328 11.428 Atomic orbital electron populations 1.21729 0.94276 1.01840 1.02732 1.22440 0.94957 0.84519 1.00147 1.87831 1.22066 1.25935 1.95161 1.22077 0.79549 0.99554 0.95171 0.90806 1.21957 0.96501 1.01432 0.97124 1.21394 0.94538 0.99464 0.99622 1.21963 1.00961 0.97414 0.96050 1.21673 0.91936 0.88647 0.91739 1.22944 0.99816 0.97306 0.98305 1.23078 0.98003 0.98993 0.97640 1.20813 0.84159 0.89783 0.91586 0.96466 1.21878 1.50034 0.99318 0.92838 0.92666 1.25832 0.93480 0.96725 1.01567 1.70679 1.42812 1.39737 0.99431 0.83585 0.76390 0.76106 0.74384 1.20728 1.21394 1.21383 1.89235 1.42226 1.30217 1.66000 1.21619 0.94566 0.96496 1.00764 0.92206 0.92022 0.91449 0.93288 0.93743 0.92030 0.92528 0.92583 0.90365 0.91846 0.92406 0.91885 0.91799 0.92343 0.91660 0.90991 0.91463 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 37.16 0.38 -1.28 16 2 C 0.06 0.79 6.47 37.16 0.24 1.03 16 3 O -0.39 -6.53 9.99 -35.23 -0.35 -6.88 16 4 C 0.09 1.66 2.48 -26.71 -0.07 1.59 16 5 H 0.07 1.51 7.40 -51.93 -0.38 1.12 16 6 C -0.13 -2.11 5.53 -26.74 -0.15 -2.25 16 7 C -0.11 -1.92 5.80 -26.71 -0.15 -2.08 16 8 C -0.13 -2.20 4.65 -26.82 -0.12 -2.32 16 9 C 0.10 1.96 0.71 -90.39 -0.06 1.89 16 10 C -0.15 -2.62 6.26 -25.29 -0.16 -2.78 16 11 C -0.14 -2.94 6.56 -24.68 -0.16 -3.10 16 12 C 0.19 4.88 2.60 -26.82 -0.07 4.81 16 13 H 0.02 0.48 7.98 -51.93 -0.41 0.06 16 14 C -0.60 -17.15 8.82 -34.44 -0.30 -17.45 16 15 H 0.06 1.55 7.77 -52.49 -0.41 1.14 16 16 C 0.03 0.92 5.43 -17.82 -0.10 0.82 16 17 N -0.89 -26.97 13.58 55.43 0.75 -26.22 16 18 Si 1.07 25.21 29.90 -169.99 -5.08 20.12 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 22 O -0.36 -8.77 8.45 -35.23 -0.30 -9.07 16 23 C -0.10 -1.73 4.38 -26.82 -0.12 -1.85 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 28 H 0.04 0.59 7.87 -51.93 -0.41 0.18 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.85 7.87 -51.93 -0.41 0.44 16 31 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 32 H 0.08 1.58 7.75 -51.93 -0.40 1.18 16 33 H 0.06 1.16 8.11 -51.93 -0.42 0.74 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.02 7.68 -51.93 -0.40 0.62 16 36 H 0.06 1.04 7.69 -51.93 -0.40 0.64 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.41 8.05 -51.93 -0.42 0.99 16 39 H 0.28 8.45 6.66 -40.82 -0.27 8.17 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 LS Contribution 319.41 15.07 4.81 4.81 Total: -1.00 -30.39 319.41 -8.37 -38.76 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.36 Total: 1.44 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -0.84 Total: -22.97 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.75 Total: -26.22 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.65 Total: -15.95 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.12 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.39 -8.37 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721208922.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.579 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds