Wall clock time and date at job start Mon Mar 30 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47079 * 2 1 4 4 C 1.42899 * 113.99778 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47558 * 29.99409 * 4 3 2 6 6 C 1.52996 * 109.47710 * 269.97759 * 4 3 2 7 7 C 1.53003 * 109.52936 * 179.78332 * 6 4 3 8 8 C 1.53042 * 109.44994 * 60.22110 * 7 6 4 9 9 C 1.52813 * 109.45902 * 300.39100 * 8 7 6 10 10 C 1.54230 * 109.41146 * 299.17320 * 9 8 7 11 11 C 1.55336 * 102.20069 * 219.03953 * 10 9 8 12 12 C 1.54959 * 100.95628 * 34.00561 * 11 10 9 13 13 H 1.09001 * 110.31248 * 82.57200 * 12 11 10 14 14 C 1.50700 * 110.31054 * 204.73874 * 12 11 10 15 15 H 1.07999 * 119.99680 * 357.17094 * 14 12 11 16 16 C 1.37876 * 120.00266 * 177.17740 * 14 12 11 17 17 N 1.31513 * 120.00123 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99673 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47277 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47013 * 120.00099 * 18 16 14 21 21 H 1.48504 * 109.47050 * 239.99613 * 18 16 14 22 22 O 1.43036 * 110.07570 * 180.91524 * 9 8 7 23 23 C 1.52826 * 110.07833 * 59.42523 * 9 8 7 24 24 H 1.09004 * 109.46930 * 299.99773 * 1 2 3 25 25 H 1.09004 * 109.47059 * 59.99375 * 1 2 3 26 26 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46930 * 240.00226 * 2 1 3 28 28 H 1.09000 * 109.47312 * 120.00170 * 2 1 3 29 29 H 1.08995 * 109.46675 * 299.80365 * 6 4 3 30 30 H 1.09007 * 109.46079 * 59.76919 * 6 4 3 31 31 H 1.09001 * 109.47486 * 300.22990 * 7 6 4 32 32 H 1.09003 * 109.47545 * 180.21687 * 7 6 4 33 33 H 1.09001 * 109.47297 * 180.39583 * 8 7 6 34 34 H 1.09000 * 109.47378 * 60.38366 * 8 7 6 35 35 H 1.09006 * 110.85664 * 337.21945 * 10 9 8 36 36 H 1.09001 * 110.85776 * 100.86024 * 10 9 8 37 37 H 1.08993 * 111.12085 * 276.08447 * 11 10 9 38 38 H 1.08999 * 111.15686 * 151.94295 * 11 10 9 39 39 H 0.96994 * 119.99674 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.47428 * 180.57141 * 23 9 8 41 41 H 1.08999 * 109.47225 * 60.56963 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8632 0.6017 -0.5146 6 6 3.9400 1.5007 1.4416 7 6 5.4657 1.6161 1.4424 8 6 5.8799 2.9024 0.7241 9 6 5.3637 2.8713 -0.7139 10 6 5.9806 1.6671 -1.4540 11 6 6.2584 2.2558 -2.8644 12 6 6.6192 3.7198 -2.5066 13 1 7.6651 3.7895 -2.2078 14 6 6.3474 4.6269 -3.6789 15 1 5.9989 4.2122 -4.6132 16 6 6.5440 5.9863 -3.5588 17 7 6.9681 6.4914 -2.4210 18 14 6.2078 7.1106 -5.0123 19 1 5.7423 6.3012 -6.1669 20 1 5.1592 8.0956 -4.6440 21 1 7.4541 7.8290 -5.3810 22 8 5.7619 4.0590 -1.4043 23 6 3.8406 2.7461 -0.7220 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.5105 2.3613 1.9543 30 1 3.6447 0.5867 1.9569 31 1 5.8953 0.7573 0.9265 32 1 5.8277 1.6410 2.4702 33 1 6.9670 2.9814 0.7183 34 1 5.4558 3.7615 1.2439 35 1 6.9078 1.3511 -0.9758 36 1 5.2712 0.8415 -1.5109 37 1 5.3673 2.2127 -3.4905 38 1 7.0970 1.7505 -3.3435 39 1 7.1066 7.4477 -2.3367 40 1 3.4840 2.7147 -1.7515 41 1 3.4027 3.6042 -0.2119 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721208925.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:51 Heat of formation + Delta-G solvation = -114.885500 kcal Electronic energy + Delta-G solvation = -20131.251223 eV Core-core repulsion = 17203.217786 eV Total energy + Delta-G solvation = -2928.033437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.81013 -37.78516 -35.32896 -32.47765 -31.49224 -30.84871 -29.72600 -28.83843 -26.24569 -23.29426 -22.72539 -22.10135 -21.46034 -20.16775 -18.14020 -16.83341 -16.42721 -15.60891 -15.25590 -15.12575 -14.61103 -14.02591 -13.94241 -13.61253 -13.17844 -12.82495 -12.44703 -12.41183 -12.06930 -12.01909 -11.79974 -11.65237 -11.46320 -10.92037 -10.81785 -10.71556 -10.68527 -10.49149 -10.38195 -10.21576 -10.06824 -9.65318 -9.62622 -9.28692 -8.98509 -8.52633 -7.85784 -5.96743 -4.09541 3.32485 3.40511 3.44015 3.73635 4.45723 4.76784 4.94340 5.05205 5.11170 5.22819 5.23941 5.30993 5.41511 5.45816 5.53333 5.57131 5.59847 5.68597 5.79377 5.85030 5.92373 6.02183 6.02980 6.07712 6.20122 6.24379 6.28284 6.48574 6.51435 6.60083 6.65748 6.70424 6.83960 6.90980 7.02232 7.42090 7.62673 7.92897 8.30375 8.69052 9.08888 9.61352 11.10731 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.025974 B = 0.005766 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.732730 B = 4854.581540 C = 5329.369764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.383 6.383 4 C 0.092 3.908 5 H 0.061 0.939 6 C -0.138 4.138 7 C -0.114 4.114 8 C -0.121 4.121 9 C 0.109 3.891 10 C -0.151 4.151 11 C -0.148 4.148 12 C 0.211 3.789 13 H 0.026 0.974 14 C -0.534 4.534 15 H 0.062 0.938 16 C 0.078 3.922 17 N -0.862 5.862 18 Si 0.890 3.110 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.283 1.283 22 O -0.344 6.344 23 C -0.111 4.111 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.260 0.740 40 H 0.070 0.930 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.521 -12.978 6.759 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.303 6.303 4 C 0.035 3.965 5 H 0.079 0.921 6 C -0.175 4.175 7 C -0.151 4.151 8 C -0.159 4.159 9 C 0.068 3.932 10 C -0.188 4.188 11 C -0.186 4.186 12 C 0.156 3.844 13 H 0.044 0.956 14 C -0.572 4.572 15 H 0.081 0.919 16 C -0.127 4.127 17 N -0.499 5.499 18 Si 0.717 3.283 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.209 1.209 22 O -0.263 6.263 23 C -0.149 4.149 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.647 -12.444 6.907 15.708 hybrid contribution 0.014 0.208 -0.713 0.743 sum -6.633 -12.236 6.194 15.234 Atomic orbital electron populations 1.21737 0.94095 1.01839 1.03118 1.22449 0.95341 0.84611 0.99662 1.87936 1.21667 1.25614 1.95051 1.22237 0.80068 0.98895 0.95306 0.92147 1.22020 0.96372 1.01933 0.97220 1.21487 0.94752 0.98637 1.00263 1.21843 1.01084 0.96987 0.95981 1.21521 0.91808 0.87866 0.91991 1.23262 1.00176 0.97832 0.97553 1.23332 1.00875 0.99212 0.95138 1.20530 0.90311 0.88626 0.84926 0.95594 1.21152 1.47451 0.92116 0.96455 0.91941 1.25064 0.93857 0.98327 0.95496 1.70049 1.43424 1.12325 1.24061 0.86597 0.77967 0.80877 0.82868 1.19665 1.20848 1.20932 1.88837 1.67649 1.25240 1.44599 1.21763 0.96315 0.95967 1.00845 0.91985 0.91828 0.91468 0.93651 0.93808 0.91173 0.92562 0.92038 0.91970 0.91664 0.91625 0.91659 0.91893 0.91718 0.92149 0.93044 0.91123 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 37.16 0.38 -1.08 16 2 C 0.06 0.65 6.47 37.16 0.24 0.89 16 3 O -0.38 -5.84 9.99 -35.23 -0.35 -6.19 16 4 C 0.09 1.40 2.38 -26.71 -0.06 1.33 16 5 H 0.06 0.86 5.78 -51.93 -0.30 0.56 16 6 C -0.14 -1.87 5.53 -26.73 -0.15 -2.02 16 7 C -0.11 -1.55 5.71 -26.71 -0.15 -1.70 16 8 C -0.12 -2.12 4.96 -26.81 -0.13 -2.26 16 9 C 0.11 2.18 0.99 -90.16 -0.09 2.09 16 10 C -0.15 -2.70 4.77 -24.85 -0.12 -2.82 16 11 C -0.15 -3.09 6.53 -24.46 -0.16 -3.25 16 12 C 0.21 5.51 3.27 -26.85 -0.09 5.42 16 13 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 14 C -0.53 -15.21 8.80 -34.44 -0.30 -15.51 16 15 H 0.06 1.73 7.77 -52.49 -0.41 1.32 16 16 C 0.08 2.25 5.42 -17.82 -0.10 2.16 16 17 N -0.86 -25.98 12.93 55.43 0.72 -25.26 16 18 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 O -0.34 -9.00 9.90 -35.23 -0.35 -9.35 16 23 C -0.11 -2.08 4.75 -26.80 -0.13 -2.20 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 28 H 0.04 0.45 7.87 -51.93 -0.41 0.04 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 31 H 0.06 0.79 7.06 -51.93 -0.37 0.42 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.09 7.55 -51.93 -0.39 0.70 16 36 H 0.06 0.99 5.80 -51.93 -0.30 0.69 16 37 H 0.06 1.36 8.05 -51.93 -0.42 0.95 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 317.24 15.07 4.78 4.78 Total: -1.00 -30.97 317.24 -8.29 -39.26 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -7.21 Total: -0.96 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -0.86 Total: -18.94 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.72 Total: -25.26 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.70 Total: -15.54 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.97 -8.29 -39.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721208925.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.624 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds