Wall clock time and date at job start Mon Mar 30 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 O 1.45202 * 109.47427 * 120.00030 * 2 1 3 13 13 C 1.34233 * 116.99797 * 270.00418 * 12 2 1 14 14 O 1.20820 * 120.00322 * 359.97438 * 13 12 2 15 15 C 1.50694 * 119.99716 * 179.97438 * 13 12 2 16 16 C 1.53004 * 109.47327 * 179.97438 * 15 13 12 17 17 H 1.08997 * 109.46739 * 305.00032 * 16 15 13 18 18 C 1.53002 * 109.46824 * 64.99657 * 16 15 13 19 19 C 1.52999 * 109.47094 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.47513 * 300.00474 * 19 18 16 21 21 C 1.53005 * 109.46988 * 59.99561 * 20 19 18 22 22 C 1.52996 * 109.47056 * 300.00085 * 21 20 19 23 23 H 1.09004 * 109.46829 * 180.02562 * 22 21 20 24 24 C 1.52992 * 109.47205 * 299.99917 * 22 21 20 25 25 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 26 26 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 27 27 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 29 29 H 1.09007 * 109.47345 * 299.99847 * 15 13 12 30 30 H 1.09001 * 109.47355 * 59.99629 * 15 13 12 31 31 H 1.08999 * 109.47434 * 300.00731 * 18 16 15 32 32 H 1.09009 * 109.46778 * 60.00503 * 18 16 15 33 33 H 1.09006 * 109.46550 * 60.00179 * 19 18 16 34 34 H 1.09004 * 109.47125 * 180.02562 * 19 18 16 35 35 H 1.08995 * 109.47301 * 179.97438 * 20 19 18 36 36 H 1.08994 * 109.46835 * 299.99823 * 20 19 18 37 37 H 1.08997 * 109.46621 * 60.00360 * 21 20 19 38 38 H 1.08998 * 109.46825 * 180.02562 * 21 20 19 39 39 H 1.09007 * 109.47024 * 180.02562 * 24 22 21 40 40 H 1.09004 * 109.47382 * 299.99933 * 24 22 21 41 41 H 1.08996 * 109.47332 * 60.00295 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 3.6305 -0.5437 -4.4119 10 1 2.4881 -2.5651 -3.7122 11 1 1.3445 -0.9488 -5.1123 12 8 2.0141 -0.6845 1.1855 13 6 2.2171 0.0640 2.2811 14 8 1.9981 1.2518 2.2504 15 6 2.7183 -0.5772 3.5494 16 6 2.8636 0.4891 4.6371 17 1 3.5037 1.2932 4.2743 18 6 1.4846 1.0528 4.9860 19 6 1.6298 2.1186 6.0741 20 6 2.2551 1.4918 7.3218 21 6 3.6340 0.9280 6.9729 22 6 3.4888 -0.1378 5.8849 23 1 4.4712 -0.5397 5.6366 24 6 2.5902 -1.2667 6.3935 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 0.7087 1.1613 -3.4844 29 1 2.0088 -1.3370 3.8774 30 1 3.6872 -1.0408 3.3639 31 1 1.0389 1.4990 4.0969 32 1 0.8445 0.2485 5.3488 33 1 2.2701 2.9229 5.7117 34 1 0.6473 2.5199 6.3229 35 1 2.3589 2.2511 8.0968 36 1 1.6149 0.6875 7.6841 37 1 4.2742 1.7323 6.6106 38 1 4.0793 0.4810 7.8617 39 1 2.4871 -2.0262 5.6185 40 1 3.0357 -1.7133 7.2824 41 1 1.6078 -0.8651 6.6421 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:37 Heat of formation + Delta-G solvation = -143.240365 kcal Electronic energy + Delta-G solvation = -19603.843087 eV Core-core repulsion = 16674.580090 eV Total energy + Delta-G solvation = -2929.262997 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.54077 -39.98419 -37.52403 -35.32872 -33.84778 -32.57063 -31.68400 -28.98020 -27.48286 -27.11570 -24.08772 -23.13863 -22.39422 -21.07865 -19.32648 -18.80484 -18.37238 -17.28078 -16.96971 -16.54813 -16.31990 -15.45058 -15.10333 -14.95339 -14.62901 -14.15443 -13.99761 -13.76729 -13.50819 -13.34551 -13.12763 -13.00213 -12.87295 -12.62721 -12.40442 -12.38848 -12.21185 -12.13700 -11.91466 -11.67203 -11.56323 -11.36865 -11.07766 -10.97222 -10.80331 -10.68954 -10.60327 -8.29637 -6.46851 1.40272 1.42039 1.43511 1.55130 2.08886 2.43303 3.00945 3.65014 3.78733 3.82335 4.06985 4.21681 4.31558 4.39845 4.48273 4.51160 4.52717 4.59498 4.67069 4.76499 4.78902 4.80458 4.83254 4.91605 5.06763 5.11042 5.16703 5.22404 5.23226 5.31000 5.33493 5.44264 5.47201 5.50855 5.59304 5.63127 5.72172 5.93453 6.14171 6.59494 7.02888 7.26386 8.78142 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.045400 B = 0.004332 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.593922 B = 6462.067598 C = 6737.152213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.217 3.783 3 H 0.005 0.995 4 C -0.550 4.550 5 H 0.067 0.933 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.984 3.016 9 H -0.272 1.272 10 H -0.262 1.262 11 H -0.275 1.275 12 O -0.368 6.368 13 C 0.441 3.559 14 O -0.549 6.549 15 C -0.103 4.103 16 C -0.065 4.065 17 H 0.056 0.944 18 C -0.123 4.123 19 C -0.116 4.116 20 C -0.116 4.116 21 C -0.112 4.112 22 C -0.081 4.081 23 H 0.080 0.920 24 C -0.155 4.155 25 H 0.022 0.978 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.271 0.729 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.774 -3.461 18.883 19.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.163 3.837 3 H 0.022 0.978 4 C -0.587 4.587 5 H 0.085 0.915 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.807 3.193 9 H -0.197 1.197 10 H -0.186 1.186 11 H -0.200 1.200 12 O -0.285 6.285 13 C 0.286 3.714 14 O -0.440 6.440 15 C -0.141 4.141 16 C -0.083 4.083 17 H 0.074 0.926 18 C -0.161 4.161 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.150 4.150 22 C -0.099 4.099 23 H 0.098 0.902 24 C -0.211 4.211 25 H 0.041 0.959 26 H 0.098 0.902 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.602 -3.000 18.699 19.277 hybrid contribution -0.047 0.334 -1.282 1.325 sum 3.555 -2.666 17.417 17.975 Atomic orbital electron populations 1.21962 0.96873 1.00298 1.00678 1.20287 0.91948 0.91958 0.79468 0.97759 1.21321 1.33411 1.13926 0.90060 0.91456 1.25860 0.94666 0.95674 1.02220 1.70027 1.36585 1.23760 1.25210 0.85166 0.78131 0.78961 0.77057 1.19718 1.18574 1.19984 1.86481 1.76306 1.44028 1.21705 1.24716 0.73915 0.85980 0.86784 1.90548 1.49948 1.18547 1.84983 1.21689 1.04662 1.00164 0.87547 1.20961 0.97591 0.95936 0.93839 0.92595 1.21712 0.96744 0.99070 0.98543 1.21482 1.00652 0.97518 0.95676 1.21566 0.96784 1.00474 0.96524 1.21556 0.97087 0.97849 0.98467 1.21101 0.99441 0.96102 0.93257 0.90156 1.22021 1.00010 0.97558 1.01551 0.95916 0.90193 0.93575 0.92006 0.86010 0.86205 0.94027 0.91073 0.93375 0.92049 0.91308 0.90870 0.92696 0.90149 0.92279 0.91310 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.44 9.33 71.98 0.67 -6.76 16 2 C 0.22 12.25 2.56 29.85 0.08 12.33 16 3 H 0.00 0.29 7.16 -2.38 -0.02 0.27 16 4 C -0.55 -31.86 8.90 25.60 0.23 -31.63 16 5 H 0.07 3.81 7.81 -2.91 -0.02 3.78 16 6 C 0.02 0.86 5.30 84.66 0.45 1.31 16 7 N -0.92 -53.60 11.32 21.45 0.24 -53.36 16 8 Si 0.98 43.30 29.54 68.60 2.03 45.33 16 9 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 12 O -0.37 -18.17 9.86 -51.44 -0.51 -18.67 16 13 C 0.44 18.68 7.65 71.23 0.54 19.23 16 14 O -0.55 -26.63 13.19 21.98 0.29 -26.34 16 15 C -0.10 -2.92 4.78 29.85 0.14 -2.78 16 16 C -0.06 -1.65 1.61 -10.79 -0.02 -1.67 16 17 H 0.06 1.67 7.96 -2.39 -0.02 1.65 16 18 C -0.12 -3.32 4.67 30.59 0.14 -3.18 16 19 C -0.12 -2.61 5.92 30.59 0.18 -2.43 16 20 C -0.12 -1.95 5.65 30.60 0.17 -1.77 16 21 C -0.11 -1.82 5.45 30.59 0.17 -1.65 16 22 C -0.08 -1.44 2.72 -10.80 -0.03 -1.47 16 23 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 24 C -0.15 -2.35 8.15 71.98 0.59 -1.77 16 25 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.08 4.53 6.07 -2.39 -0.01 4.52 16 27 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.27 14.73 8.31 -92.70 -0.77 13.96 16 29 H 0.12 2.92 6.71 -2.38 -0.02 2.90 16 30 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.04 1.47 5.96 -2.39 -0.01 1.45 16 32 H 0.07 1.70 6.43 -2.38 -0.02 1.69 16 33 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.11 6.43 -2.39 -0.02 1.10 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 0.90 6.54 -2.38 -0.02 0.88 16 40 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.06 0.95 4.81 -2.39 -0.01 0.94 16 Total: -1.00 -66.96 313.51 6.36 -60.60 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.99 Total: 14.70 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 3.32 Total: -22.25 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.24 Total: -53.36 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -0.22 Total: -45.02 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -66.96 6.36 -60.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.641 kcal (2) G-P(sol) polarization free energy of solvation -66.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds