Wall clock time and date at job start Mon Mar 30 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.46976 * 2 1 4 4 C 1.50696 * 109.47180 * 239.99341 * 2 1 3 5 5 H 1.08003 * 120.00355 * 239.99533 * 4 2 1 6 6 C 1.37878 * 119.99633 * 60.00611 * 4 2 1 7 7 N 1.31509 * 120.00432 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99671 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47228 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47123 * 119.99855 * 8 6 4 11 11 H 1.48505 * 109.47004 * 239.99431 * 8 6 4 12 12 O 1.45200 * 109.46946 * 119.99689 * 2 1 3 13 13 C 1.34236 * 117.00156 * 269.99954 * 12 2 1 14 14 O 1.20828 * 119.99512 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00189 * 180.02562 * 13 12 2 16 16 C 1.53000 * 109.46984 * 180.02562 * 15 13 12 17 17 H 1.09002 * 109.47398 * 54.99888 * 16 15 13 18 18 C 1.52997 * 109.47060 * 294.99719 * 16 15 13 19 19 C 1.52992 * 109.47482 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.47106 * 60.00162 * 19 18 16 21 21 C 1.53002 * 109.47128 * 300.00123 * 20 19 18 22 22 C 1.52997 * 109.46978 * 59.99726 * 21 20 19 23 23 H 1.09002 * 109.47497 * 60.00450 * 22 21 20 24 24 C 1.53006 * 109.47445 * 180.02562 * 22 21 20 25 25 H 1.09002 * 109.47296 * 60.00302 * 1 2 3 26 26 H 1.09007 * 109.47566 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47514 * 300.00411 * 1 2 3 28 28 H 0.96998 * 120.00473 * 180.02562 * 7 6 4 29 29 H 1.08990 * 109.47311 * 60.00248 * 15 13 12 30 30 H 1.09001 * 109.47069 * 300.00013 * 15 13 12 31 31 H 1.09002 * 109.47153 * 300.00319 * 18 16 15 32 32 H 1.08998 * 109.47533 * 59.99948 * 18 16 15 33 33 H 1.09002 * 109.47103 * 300.00247 * 19 18 16 34 34 H 1.08996 * 109.47747 * 179.97438 * 19 18 16 35 35 H 1.08996 * 109.47407 * 180.02562 * 20 19 18 36 36 H 1.09002 * 109.47596 * 60.00070 * 20 19 18 37 37 H 1.09002 * 109.47097 * 299.99925 * 21 20 19 38 38 H 1.08998 * 109.47844 * 180.02562 * 21 20 19 39 39 H 1.08996 * 109.47165 * 180.02562 * 24 22 21 40 40 H 1.09001 * 109.46726 * 300.00265 * 24 22 21 41 41 H 1.09002 * 109.46589 * 59.99669 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4826 7 7 0.9429 0.8295 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 3.1483 -2.2859 -3.6035 10 1 1.1678 -1.5869 -4.8164 11 1 3.1473 -0.1861 -4.8160 12 8 2.0139 -0.6844 1.1856 13 6 2.2170 0.0641 2.2812 14 8 1.9972 1.2519 2.2505 15 6 2.7192 -0.5768 3.5493 16 6 2.8630 0.4893 4.6372 17 1 1.9149 1.0127 4.7607 18 6 3.9482 1.4886 4.2316 19 6 4.0926 2.5544 5.3198 20 6 4.4825 1.8860 6.6397 21 6 3.3973 0.8866 7.0454 22 6 3.2529 -0.1791 5.9572 23 1 4.2009 -0.7026 5.8332 24 6 2.1672 -1.1782 6.3625 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.7083 1.1607 -3.4844 29 1 3.6882 -1.0397 3.3634 30 1 2.0103 -1.3370 3.8775 31 1 4.8964 0.9652 4.1081 32 1 3.6708 1.9645 3.2911 33 1 3.1446 3.0779 5.4437 34 1 4.8660 3.2661 5.0311 35 1 4.5849 2.6452 7.4151 36 1 5.4305 1.3625 6.5159 37 1 2.4493 1.4101 7.1693 38 1 3.6747 0.4108 7.9859 39 1 2.0647 -1.9376 5.5874 40 1 2.4446 -1.6543 7.3029 41 1 1.2194 -0.6543 6.4861 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:45 Heat of formation + Delta-G solvation = -131.564201 kcal Electronic energy + Delta-G solvation = -19519.903910 eV Core-core repulsion = 16591.147230 eV Total energy + Delta-G solvation = -2928.756680 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.94371 -38.53538 -35.65822 -33.27524 -33.05213 -31.93662 -29.63651 -27.75049 -25.94590 -25.28842 -22.64209 -21.47524 -20.75662 -19.72041 -19.30977 -16.86325 -16.53157 -15.41159 -15.34557 -14.97833 -14.52152 -14.46607 -14.11052 -13.78227 -13.39650 -12.74316 -12.56196 -12.20839 -12.02631 -11.91953 -11.72774 -11.53660 -11.47627 -11.10553 -11.05368 -10.93847 -10.81803 -10.77702 -10.36763 -10.32875 -10.26770 -10.06286 -9.91253 -9.52568 -9.30902 -8.85713 -8.47621 -6.16926 -4.23594 3.09328 3.24259 3.30971 3.36053 3.75861 4.35033 4.63110 4.69536 4.79225 5.08259 5.13267 5.16304 5.28867 5.39564 5.47114 5.52076 5.57541 5.63588 5.74536 5.77305 5.84805 5.92657 5.93779 6.03749 6.08971 6.20769 6.25741 6.29547 6.36044 6.59270 6.60744 6.69402 6.91101 6.95148 7.23750 7.62967 7.76120 7.98541 8.17849 8.69549 8.93942 9.42098 10.90555 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.038308 B = 0.004382 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.744526 B = 6388.740349 C = 6566.626532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.282 1.282 12 O -0.360 6.360 13 C 0.450 3.550 14 O -0.520 6.520 15 C -0.116 4.116 16 C -0.067 4.067 17 H 0.078 0.922 18 C -0.124 4.124 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.112 4.112 22 C -0.087 4.087 23 H 0.070 0.930 24 C -0.153 4.153 25 H 0.098 0.902 26 H 0.036 0.964 27 H 0.015 0.985 28 H 0.265 0.735 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.657 -1.368 17.035 17.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.558 4.558 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.208 1.208 12 O -0.276 6.276 13 C 0.294 3.706 14 O -0.411 6.411 15 C -0.154 4.154 16 C -0.086 4.086 17 H 0.097 0.903 18 C -0.161 4.161 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.105 4.105 23 H 0.089 0.911 24 C -0.210 4.210 25 H 0.117 0.883 26 H 0.055 0.945 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.491 -0.909 16.823 17.436 hybrid contribution 0.163 -0.296 -0.926 0.986 sum 4.654 -1.205 15.897 16.608 Atomic orbital electron populations 1.22151 0.97681 1.00008 1.01336 1.20594 0.91317 0.93896 0.77993 0.93632 1.21083 1.32319 1.13401 0.88980 0.91322 1.24889 0.94956 0.95097 0.99068 1.69908 1.36182 1.22647 1.24009 0.86237 0.78636 0.79509 0.81858 1.19482 1.20721 1.20761 1.86485 1.75809 1.43815 1.21502 1.23421 0.74895 0.86091 0.86241 1.90554 1.48763 1.16972 1.84775 1.21518 1.03435 0.99571 0.90876 1.20983 1.00274 0.94970 0.92354 0.90346 1.21742 0.97813 0.96653 0.99878 1.21494 1.01343 0.97850 0.94712 1.21557 0.98596 0.98210 0.97362 1.21565 0.99229 0.96559 0.97585 1.21162 0.99073 0.95837 0.94445 0.91119 1.21940 0.98836 0.99116 1.01125 0.88321 0.94523 0.96576 0.92495 0.88503 0.88233 0.92613 0.89678 0.92035 0.92330 0.92470 0.92202 0.92009 0.92269 0.92117 0.92884 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.32 37.15 0.35 -3.63 16 2 C 0.21 5.85 2.56 -27.89 -0.07 5.78 16 3 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.80 8.90 -34.44 -0.31 -15.11 16 5 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.53 11.32 55.43 0.63 -24.91 16 8 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 O -0.36 -8.69 9.86 -39.27 -0.39 -9.08 16 13 C 0.45 9.34 7.65 36.00 0.28 9.62 16 14 O -0.52 -12.02 13.19 -18.75 -0.25 -12.27 16 15 C -0.12 -1.71 5.07 -27.88 -0.14 -1.85 16 16 C -0.07 -0.89 1.37 -90.62 -0.12 -1.01 16 17 H 0.08 1.15 7.96 -51.93 -0.41 0.74 16 18 C -0.12 -1.70 4.94 -26.74 -0.13 -1.84 16 19 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 20 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 21 C -0.11 -1.06 5.20 -26.73 -0.14 -1.20 16 22 C -0.09 -0.89 2.25 -90.62 -0.20 -1.10 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 C -0.15 -1.44 8.85 37.16 0.33 -1.11 16 25 H 0.10 2.71 6.07 -51.93 -0.32 2.40 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.10 1.29 6.17 -51.93 -0.32 0.97 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.46 5.96 -51.93 -0.31 1.15 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.57 6.32 -51.93 -0.33 0.24 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 320.08 15.07 4.82 4.82 Total: -1.00 -30.11 320.08 -7.88 -37.99 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.10 Total: -0.12 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -0.58 Total: -12.66 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.63 Total: -24.91 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.63 Total: -21.34 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.11 -7.88 -37.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.575 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds