Wall clock time and date at job start Mon Mar 30 2020 06:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46648 * 2 1 4 4 C 1.50696 * 109.47276 * 240.00407 * 2 1 3 5 5 H 1.08001 * 119.99757 * 240.00063 * 4 2 1 6 6 C 1.37878 * 120.00506 * 59.99410 * 4 2 1 7 7 N 1.31512 * 119.99642 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00125 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47325 * 59.99964 * 8 6 4 10 10 H 1.48497 * 109.47115 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.46718 * 300.00027 * 8 6 4 12 12 O 1.45196 * 109.47051 * 119.99953 * 2 1 3 13 13 C 1.34234 * 116.99938 * 270.00261 * 12 2 1 14 14 O 1.20826 * 119.99712 * 359.72483 * 13 12 2 15 15 C 1.50700 * 120.00068 * 180.02562 * 13 12 2 16 16 C 1.53010 * 109.47209 * 300.00071 * 15 13 12 17 17 C 1.52989 * 109.46361 * 164.04428 * 16 15 13 18 18 C 1.52986 * 109.50607 * 315.99056 * 17 16 15 19 19 C 1.53007 * 109.46973 * 112.93757 * 18 17 16 20 20 C 1.53006 * 109.43086 * 284.03679 * 19 18 17 21 21 C 1.52984 * 109.48311 * 75.96090 * 20 19 18 22 22 C 1.53004 * 109.50784 * 247.06687 * 21 20 19 23 23 H 1.08992 * 109.47394 * 300.00082 * 1 2 3 24 24 H 1.08999 * 109.47287 * 60.00672 * 1 2 3 25 25 H 1.09003 * 109.46631 * 179.97438 * 1 2 3 26 26 H 0.97004 * 119.99898 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.46550 * 59.99877 * 15 13 12 28 28 H 1.08997 * 109.47448 * 284.04640 * 16 15 13 29 29 H 1.09007 * 109.47270 * 44.04889 * 16 15 13 30 30 H 1.08992 * 109.46708 * 195.97602 * 17 16 15 31 31 H 1.09000 * 109.45633 * 75.99354 * 17 16 15 32 32 H 1.08995 * 109.47483 * 352.93394 * 18 17 16 33 33 H 1.09001 * 109.46669 * 232.93003 * 18 17 16 34 34 H 1.09003 * 109.47626 * 164.05297 * 19 18 17 35 35 H 1.09002 * 109.48757 * 44.03011 * 19 18 17 36 36 H 1.09000 * 109.46929 * 315.96340 * 20 19 18 37 37 H 1.08993 * 109.47295 * 195.96933 * 20 19 18 38 38 H 1.09003 * 109.46579 * 127.05833 * 21 20 19 39 39 H 1.09000 * 109.46625 * 7.07580 * 21 20 19 40 40 H 1.08998 * 109.47062 * 284.01523 * 22 21 20 41 41 H 1.09002 * 109.47782 * 164.00966 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0080 9 1 1.8261 -2.5202 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8066 -1.1207 -4.0081 12 8 2.0140 -0.6845 1.1855 13 6 2.2171 0.0641 2.2811 14 8 2.0024 1.2527 2.2490 15 6 2.7193 -0.5769 3.5492 16 6 1.7243 -1.6442 4.0099 17 6 2.3949 -2.5557 5.0395 18 6 3.8029 -2.9165 4.5621 19 6 4.8360 -2.2795 5.4938 20 6 4.9419 -0.7837 5.1895 21 6 3.7294 -0.0570 5.7743 22 6 2.8637 0.4893 4.6370 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7086 1.1612 -3.4844 27 1 3.6884 -1.0398 3.3631 28 1 0.8574 -1.1620 4.4615 29 1 1.4049 -2.2373 3.1529 30 1 1.8067 -3.4658 5.1565 31 1 2.4574 -2.0380 5.9966 32 1 3.9494 -2.5441 3.5483 33 1 3.9235 -3.9997 4.5724 34 1 5.8060 -2.7516 5.3378 35 1 4.5264 -2.4186 6.5296 36 1 4.9697 -0.6335 4.1103 37 1 5.8536 -0.3859 5.6352 38 1 4.0678 0.7678 6.4014 39 1 3.1434 -0.7530 6.3746 40 1 3.3354 1.3770 4.2156 41 1 1.8784 0.7501 5.0233 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744136113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:27 Heat of formation + Delta-G solvation = -124.744302 kcal Electronic energy + Delta-G solvation = -19954.283845 eV Core-core repulsion = 17025.822898 eV Total energy + Delta-G solvation = -2928.460947 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.71786 -39.78749 -37.56989 -35.35911 -34.02694 -33.68954 -31.68496 -28.38551 -27.48146 -26.84017 -24.23099 -22.88332 -21.83097 -21.58342 -20.08893 -18.89361 -18.50346 -17.53432 -16.98683 -16.55307 -15.93435 -15.50510 -15.07695 -14.95117 -14.77353 -14.26651 -14.13282 -13.99822 -13.64084 -13.26469 -13.07831 -12.84351 -12.82618 -12.55702 -12.40986 -12.26297 -12.18543 -12.04133 -11.97497 -11.67521 -11.59086 -11.27883 -11.15467 -11.01496 -10.90925 -10.60913 -10.52244 -8.30395 -6.47958 1.33998 1.40313 1.44491 1.52673 2.04096 2.41457 2.99930 3.58928 3.74496 3.88182 4.01685 4.17198 4.21793 4.26173 4.34590 4.36901 4.39864 4.52635 4.74052 4.76356 4.79351 4.84367 4.96902 5.00494 5.04425 5.06974 5.16110 5.18007 5.25843 5.26448 5.37966 5.43592 5.46265 5.50445 5.60361 5.64633 5.68441 5.90359 6.08792 6.57509 6.97584 7.24567 8.77295 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.030192 B = 0.005225 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.178758 B = 5357.465404 C = 5674.293996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.216 3.784 3 H 0.003 0.997 4 C -0.550 4.550 5 H 0.067 0.933 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.984 3.016 9 H -0.263 1.263 10 H -0.276 1.276 11 H -0.268 1.268 12 O -0.362 6.362 13 C 0.443 3.557 14 O -0.559 6.559 15 C -0.090 4.090 16 C -0.109 4.109 17 C -0.115 4.115 18 C -0.136 4.136 19 C -0.113 4.113 20 C -0.135 4.135 21 C -0.116 4.116 22 C -0.102 4.102 23 H 0.020 0.980 24 H 0.081 0.919 25 H 0.046 0.954 26 H 0.271 0.729 27 H 0.136 0.864 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.671 -7.595 17.081 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.162 3.838 3 H 0.020 0.980 4 C -0.587 4.587 5 H 0.085 0.915 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.807 3.193 9 H -0.187 1.187 10 H -0.201 1.201 11 H -0.193 1.193 12 O -0.278 6.278 13 C 0.288 3.712 14 O -0.451 6.451 15 C -0.108 4.108 16 C -0.147 4.147 17 C -0.152 4.152 18 C -0.173 4.173 19 C -0.151 4.151 20 C -0.172 4.172 21 C -0.153 4.153 22 C -0.139 4.139 23 H 0.040 0.960 24 H 0.099 0.901 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.152 0.848 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.497 -7.131 16.890 19.140 hybrid contribution -0.111 0.436 -1.346 1.419 sum 5.386 -6.695 15.544 17.761 Atomic orbital electron populations 1.21962 0.96804 1.00341 1.00661 1.20313 0.92023 0.91918 0.79495 0.97955 1.21266 1.33552 1.13947 0.89973 0.91457 1.25866 0.94652 0.95656 1.02215 1.70019 1.36516 1.23699 1.25311 0.85215 0.78785 0.78657 0.76639 1.18708 1.20104 1.19308 1.86476 1.76084 1.43791 1.21483 1.24854 0.73573 0.85778 0.86953 1.90549 1.50386 1.18755 1.85369 1.21821 1.03029 0.98271 0.87729 1.21635 0.97059 0.95903 1.00071 1.21820 0.95796 0.99060 0.98494 1.21890 0.94923 1.01117 0.99389 1.21701 0.99027 0.94313 1.00012 1.21880 0.98465 0.96287 1.00575 1.21849 0.96150 1.00796 0.96497 1.21531 1.01322 0.96222 0.94850 0.96049 0.90080 0.93499 0.91955 0.84750 0.91272 0.92310 0.90609 0.89149 0.92753 0.90992 0.91535 0.90050 0.93028 0.90946 0.90721 0.89027 0.93156 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.50 9.33 71.98 0.67 -6.82 16 2 C 0.22 12.36 2.56 29.85 0.08 12.44 16 3 H 0.00 0.17 7.15 -2.39 -0.02 0.15 16 4 C -0.55 -32.08 8.90 25.60 0.23 -31.85 16 5 H 0.07 3.83 7.81 -2.91 -0.02 3.80 16 6 C 0.02 0.89 5.30 84.66 0.45 1.34 16 7 N -0.92 -53.80 11.32 21.45 0.24 -53.56 16 8 Si 0.98 43.44 29.54 68.60 2.03 45.47 16 9 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 10 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 O -0.36 -18.24 9.50 -51.46 -0.49 -18.72 16 13 C 0.44 19.67 7.21 71.24 0.51 20.19 16 14 O -0.56 -28.45 14.90 21.96 0.33 -28.12 16 15 C -0.09 -2.77 2.03 -11.53 -0.02 -2.80 16 16 C -0.11 -2.81 5.05 30.59 0.15 -2.66 16 17 C -0.11 -2.05 5.48 30.59 0.17 -1.89 16 18 C -0.14 -2.45 5.47 30.59 0.17 -2.29 16 19 C -0.11 -1.68 5.59 30.60 0.17 -1.51 16 20 C -0.13 -2.40 5.47 30.59 0.17 -2.23 16 21 C -0.12 -2.09 5.48 30.59 0.17 -1.92 16 22 C -0.10 -2.70 4.60 30.60 0.14 -2.56 16 23 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.08 4.63 6.07 -2.39 -0.01 4.61 16 25 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 27 H 0.14 3.86 2.83 -2.39 -0.01 3.85 16 28 H 0.07 1.72 7.82 -2.39 -0.02 1.70 16 29 H 0.06 1.75 7.74 -2.38 -0.02 1.73 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.31 4.69 -2.39 -0.01 1.30 16 32 H 0.05 1.24 5.47 -2.39 -0.01 1.23 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 0.95 7.47 -2.39 -0.02 0.93 16 36 H 0.05 1.15 5.47 -2.39 -0.01 1.14 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.34 4.69 -2.39 -0.01 1.33 16 40 H 0.05 1.57 7.51 -2.39 -0.02 1.55 16 41 H 0.07 1.75 7.82 -2.39 -0.02 1.73 16 Total: -1.00 -67.88 306.91 6.17 -61.71 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 1.01 Total: 15.79 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: 3.05 Total: -22.56 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.24 Total: -53.56 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -0.16 Total: -46.84 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -67.88 6.17 -61.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744136113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.033 kcal (2) G-P(sol) polarization free energy of solvation -67.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds