Wall clock time and date at job start Mon Mar 30 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46711 * 2 1 4 4 C 1.50695 * 109.46948 * 240.00658 * 2 1 3 5 5 H 1.08002 * 120.00019 * 240.00097 * 4 2 1 6 6 C 1.37879 * 120.00148 * 59.99383 * 4 2 1 7 7 N 1.31516 * 120.00212 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00243 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46889 * 60.00278 * 8 6 4 10 10 H 1.48493 * 109.47684 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47435 * 300.01029 * 8 6 4 12 12 O 1.45193 * 109.47317 * 120.00304 * 2 1 3 13 13 C 1.34224 * 117.00412 * 270.00117 * 12 2 1 14 14 O 1.20831 * 119.99689 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00504 * 179.97438 * 13 12 2 16 16 C 1.52995 * 109.47678 * 179.97438 * 15 13 12 17 17 H 1.08996 * 109.47575 * 305.00662 * 16 15 13 18 18 C 1.53002 * 109.46925 * 65.00118 * 16 15 13 19 19 C 1.52997 * 109.47415 * 180.02562 * 18 16 15 20 20 C 1.53006 * 109.47164 * 300.00027 * 19 18 16 21 21 C 1.52999 * 109.46626 * 59.99702 * 20 19 18 22 22 H 1.09000 * 109.47160 * 60.00369 * 21 20 19 23 23 C 1.53006 * 109.47000 * 180.02562 * 21 20 19 24 24 C 1.52996 * 109.47577 * 185.00092 * 16 15 13 25 25 H 1.08998 * 109.47433 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47188 * 299.99219 * 1 2 3 27 27 H 1.08995 * 109.47636 * 59.99618 * 1 2 3 28 28 H 0.96993 * 120.00209 * 179.97438 * 7 6 4 29 29 H 1.09008 * 109.47091 * 59.99691 * 15 13 12 30 30 H 1.08996 * 109.47220 * 300.00639 * 15 13 12 31 31 H 1.09000 * 109.46986 * 60.00086 * 18 16 15 32 32 H 1.09001 * 109.47601 * 300.00809 * 18 16 15 33 33 H 1.09001 * 109.46922 * 180.02562 * 19 18 16 34 34 H 1.09000 * 109.47140 * 59.99976 * 19 18 16 35 35 H 1.08993 * 109.46955 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.47050 * 300.00004 * 20 19 18 37 37 H 1.09000 * 109.46866 * 60.00185 * 23 21 20 38 38 H 1.09001 * 109.47372 * 180.02562 * 23 21 20 39 39 H 1.09004 * 109.47107 * 300.00294 * 23 21 20 40 40 H 1.09000 * 109.47054 * 300.00355 * 24 16 15 41 41 H 1.09001 * 109.46997 * 60.00088 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2391 -2.4827 7 7 0.9433 0.8304 -2.6034 8 14 2.3223 -1.1191 -4.0081 9 1 1.8279 -2.5194 -4.0084 10 1 1.8276 -0.4188 -5.2205 11 1 3.8073 -1.1187 -4.0079 12 8 2.0140 -0.6845 1.1854 13 6 2.2172 0.0638 2.2811 14 8 1.9982 1.2517 2.2504 15 6 2.7183 -0.5774 3.5494 16 6 2.8637 0.4887 4.6371 17 1 3.5037 1.2929 4.2744 18 6 1.4848 1.0524 4.9861 19 6 1.6301 2.1190 6.0733 20 6 2.2560 1.4931 7.3214 21 6 3.6348 0.9294 6.9723 22 1 4.2748 1.7336 6.6092 23 6 4.2605 0.3029 8.2201 24 6 3.4893 -0.1377 5.8849 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 0.7092 1.1620 -3.4843 29 1 3.6872 -1.0411 3.3638 30 1 2.0089 -1.3372 3.8772 31 1 0.8446 0.2482 5.3488 32 1 1.0390 1.4986 4.0971 33 1 0.6476 2.5203 6.3222 34 1 2.2701 2.9232 5.7102 35 1 2.3590 2.2529 8.0960 36 1 1.6159 0.6890 7.6845 37 1 3.6203 -0.5013 8.5828 38 1 5.2430 -0.0983 7.9716 39 1 4.3640 1.0625 8.9951 40 1 2.8491 -0.9419 6.2476 41 1 4.4716 -0.5393 5.6363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747119987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:32 Heat of formation + Delta-G solvation = -134.048773 kcal Electronic energy + Delta-G solvation = -19309.440828 eV Core-core repulsion = 16380.576409 eV Total energy + Delta-G solvation = -2928.864419 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.86228 -38.53476 -35.72942 -33.32047 -33.20201 -31.79453 -29.64447 -27.43010 -26.34319 -25.29479 -22.44599 -21.80246 -20.56957 -19.74290 -19.27474 -16.84578 -16.53455 -15.46515 -15.24882 -15.21245 -14.52917 -14.33924 -14.18027 -13.73833 -13.41955 -12.77868 -12.45125 -12.38489 -12.21583 -11.85019 -11.80139 -11.52601 -11.33815 -11.13054 -11.02561 -10.95237 -10.81433 -10.75453 -10.39560 -10.36021 -10.27049 -10.21683 -9.95075 -9.48209 -9.33161 -8.88347 -8.47075 -6.16653 -4.23590 3.08878 3.27196 3.30533 3.33115 3.74902 4.34879 4.62582 4.65325 4.77011 5.06070 5.13583 5.16134 5.26272 5.40861 5.46076 5.49201 5.56197 5.61668 5.67808 5.78266 5.81579 5.85825 5.91945 6.00113 6.00987 6.21277 6.25734 6.27670 6.34869 6.56661 6.59103 6.69426 6.90967 6.95017 7.23394 7.62600 7.76073 7.98395 8.17780 8.69097 8.93342 9.41941 10.90748 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.048376 B = 0.004017 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.656422 B = 6968.321918 C = 7304.087930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.522 4.522 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.275 1.275 12 O -0.360 6.360 13 C 0.450 3.550 14 O -0.520 6.520 15 C -0.113 4.113 16 C -0.074 4.074 17 H 0.078 0.922 18 C -0.123 4.123 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.092 4.092 22 H 0.069 0.931 23 C -0.147 4.147 24 C -0.108 4.108 25 H 0.036 0.964 26 H 0.015 0.985 27 H 0.098 0.902 28 H 0.266 0.734 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.524 -1.247 18.054 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.560 4.560 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.276 6.276 13 C 0.294 3.706 14 O -0.410 6.410 15 C -0.151 4.151 16 C -0.092 4.092 17 H 0.097 0.903 18 C -0.160 4.160 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.111 4.111 22 H 0.088 0.912 23 C -0.204 4.204 24 C -0.146 4.146 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.353 -0.783 17.839 18.168 hybrid contribution 0.189 -0.320 -0.921 0.993 sum 3.542 -1.103 16.919 17.321 Atomic orbital electron populations 1.22151 0.97667 1.00018 1.01332 1.20585 0.91313 0.93885 0.77956 0.93627 1.21010 1.32489 1.13463 0.89018 0.91416 1.24891 0.94942 0.95102 0.99062 1.69890 1.36092 1.22543 1.24242 0.86332 0.79215 0.79538 0.81032 1.19941 1.21041 1.19992 1.86481 1.75796 1.43826 1.21509 1.23408 0.74916 0.86100 0.86225 1.90556 1.48850 1.17005 1.84632 1.21428 1.03360 0.99466 0.90856 1.20961 0.97995 0.97058 0.93224 0.90312 1.21736 0.96382 0.98254 0.99610 1.21498 1.00422 0.98344 0.95170 1.21610 0.96042 0.99884 0.97561 1.21130 0.96738 0.97985 0.95210 0.91229 1.21833 1.00511 1.00588 0.97456 1.21654 1.00650 0.97768 0.94500 0.94521 0.96566 0.88324 0.92372 0.88432 0.88554 0.92672 0.89787 0.92307 0.92001 0.92477 0.92191 0.92803 0.92784 0.92944 0.91853 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.33 37.16 0.35 -3.63 16 2 C 0.21 5.88 2.56 -27.88 -0.07 5.81 16 3 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.89 8.90 -34.44 -0.31 -15.20 16 5 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.58 11.32 55.43 0.63 -24.96 16 8 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 12 O -0.36 -8.70 9.86 -39.24 -0.39 -9.09 16 13 C 0.45 9.34 7.65 36.00 0.28 9.61 16 14 O -0.52 -12.01 13.19 -18.75 -0.25 -12.26 16 15 C -0.11 -1.66 5.29 -27.89 -0.15 -1.80 16 16 C -0.07 -0.97 1.84 -90.62 -0.17 -1.14 16 17 H 0.08 1.15 7.96 -51.93 -0.41 0.74 16 18 C -0.12 -1.66 4.94 -26.73 -0.13 -1.79 16 19 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 20 C -0.11 -1.09 5.20 -26.73 -0.14 -1.23 16 21 C -0.09 -0.87 2.72 -90.59 -0.25 -1.12 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 23 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 24 C -0.11 -1.11 4.49 -26.71 -0.12 -1.23 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.10 2.71 6.07 -51.93 -0.32 2.39 16 28 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.10 1.27 8.14 -51.92 -0.42 0.84 16 30 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.41 5.96 -51.93 -0.31 1.11 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -30.13 323.95 -8.06 -38.19 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -7.30 Total: -0.61 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -0.62 Total: -12.41 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.63 Total: -24.96 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.63 Total: -21.34 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.13 -8.06 -38.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747119987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.862 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds