Wall clock time and date at job start Mon Mar 30 2020 06:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47404 * 2 1 4 4 C 1.50703 * 109.46983 * 240.00550 * 2 1 3 5 5 H 1.07999 * 120.00032 * 245.46073 * 4 2 1 6 6 C 1.37881 * 120.00050 * 65.45710 * 4 2 1 7 7 N 1.31515 * 119.99958 * 9.55617 * 6 4 2 8 8 Si 1.86791 * 120.00033 * 189.55083 * 6 4 2 9 9 H 1.48498 * 109.47528 * 84.99715 * 8 6 4 10 10 H 1.48507 * 109.47194 * 204.99934 * 8 6 4 11 11 H 1.48501 * 109.47191 * 324.99668 * 8 6 4 12 12 O 1.45197 * 109.47349 * 120.00882 * 2 1 3 13 13 C 1.34229 * 116.99579 * 270.00064 * 12 2 1 14 14 O 1.20829 * 120.00161 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00063 * 179.97438 * 13 12 2 16 16 H 1.09004 * 109.47046 * 299.99957 * 15 13 12 17 17 C 1.53005 * 109.47143 * 59.99491 * 15 13 12 18 18 C 1.53005 * 109.47051 * 180.02562 * 17 15 13 19 19 C 1.53000 * 109.46954 * 299.99889 * 18 17 15 20 20 C 1.53005 * 109.47151 * 60.00172 * 19 18 17 21 21 C 1.53000 * 109.47151 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.47078 * 60.00112 * 20 19 18 23 23 C 1.53000 * 109.47261 * 179.97438 * 15 13 12 24 24 H 1.09002 * 109.46646 * 303.66348 * 1 2 3 25 25 H 1.08996 * 109.46980 * 63.65907 * 1 2 3 26 26 H 1.08996 * 109.46922 * 183.66007 * 1 2 3 27 27 H 0.97001 * 120.00355 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47380 * 300.00323 * 17 15 13 29 29 H 1.09004 * 109.46769 * 60.00296 * 17 15 13 30 30 H 1.08992 * 109.47330 * 59.99868 * 18 17 15 31 31 H 1.08996 * 109.46602 * 180.02562 * 18 17 15 32 32 H 1.09002 * 109.47361 * 180.02562 * 19 18 17 33 33 H 1.09004 * 109.47362 * 300.00440 * 19 18 17 34 34 H 1.09004 * 109.47173 * 180.02562 * 21 20 19 35 35 H 1.09006 * 109.46932 * 300.00131 * 21 20 19 36 36 H 1.09002 * 109.47053 * 59.99832 * 21 20 19 37 37 H 1.09007 * 109.46639 * 299.99781 * 22 20 19 38 38 H 1.08997 * 109.47340 * 59.99507 * 22 20 19 39 39 H 1.08991 * 109.47194 * 180.02562 * 22 20 19 40 40 H 1.08992 * 109.47084 * 299.99829 * 23 15 13 41 41 H 1.08996 * 109.46981 * 60.00526 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5786 -1.6370 -1.1340 6 6 1.7945 -0.1772 -2.4797 7 7 1.2991 1.0358 -2.5935 8 14 2.1760 -1.1776 -4.0103 9 1 1.0242 -2.0607 -4.3244 10 1 2.4228 -0.2608 -5.1522 11 1 3.3846 -2.0067 -3.7712 12 8 2.0141 -0.6846 1.1854 13 6 2.2172 0.0638 2.2810 14 8 1.9982 1.2517 2.2504 15 6 2.7183 -0.5775 3.5493 16 1 2.0088 -1.3373 3.8772 17 6 4.0783 -1.2284 3.2889 18 6 4.5868 -1.8801 4.5764 19 6 4.7315 -0.8143 5.6647 20 6 3.3715 -0.1635 5.9251 21 6 3.5163 0.9027 7.0129 22 6 2.3754 -1.2299 6.3849 23 6 2.8636 0.4886 4.6370 24 1 -0.3633 0.5697 0.8554 25 1 -0.3633 0.4560 -0.9209 26 1 -0.3633 -1.0255 0.0656 27 1 1.1321 1.4110 -3.4723 28 1 3.9752 -1.9879 2.5139 29 1 4.7878 -0.4686 2.9610 30 1 3.8772 -2.6397 4.9040 31 1 5.5558 -2.3433 4.3909 32 1 5.0942 -1.2784 6.5818 33 1 5.4411 -0.0545 5.3371 34 1 2.5473 1.3661 7.1988 35 1 3.8788 0.4388 7.9303 36 1 4.2259 1.6623 6.6849 37 1 2.2724 -1.9891 5.6095 38 1 2.7377 -1.6942 7.3021 39 1 1.4065 -0.7664 6.5700 40 1 3.5733 1.2480 4.3089 41 1 1.8950 0.9525 4.8227 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756564651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:55 Heat of formation + Delta-G solvation = -145.394771 kcal Electronic energy + Delta-G solvation = -19761.540021 eV Core-core repulsion = 16832.183602 eV Total energy + Delta-G solvation = -2929.356419 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.70538 -39.97980 -37.54814 -35.32889 -34.32313 -32.23489 -31.55338 -28.15255 -27.45440 -27.28207 -25.55067 -23.14468 -22.45387 -21.06844 -19.40059 -18.80746 -18.28909 -17.31960 -16.94348 -16.41576 -15.71242 -15.55253 -15.28671 -14.91334 -14.53379 -14.35779 -13.94787 -13.91568 -13.53931 -13.28168 -12.99272 -12.86321 -12.79114 -12.76704 -12.52869 -12.44562 -12.32173 -12.16859 -11.98420 -11.88683 -11.60442 -11.50059 -11.10157 -11.07539 -10.93323 -10.85338 -10.61590 -8.32569 -6.46578 1.33180 1.40713 1.43641 1.53854 2.02986 2.41100 2.99322 3.59913 3.69836 3.71746 4.05589 4.09559 4.25375 4.31891 4.42615 4.43401 4.50100 4.59554 4.71327 4.72676 4.75903 4.83283 4.90433 5.00384 5.08231 5.09990 5.11252 5.16197 5.18791 5.24154 5.28422 5.39718 5.43158 5.46006 5.50983 5.55685 5.67312 5.84764 6.08905 6.59291 6.97420 7.24840 8.77614 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.038093 B = 0.004807 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.870410 B = 5824.001577 C = 6173.368665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.213 3.787 3 H 0.007 0.993 4 C -0.549 4.549 5 H 0.068 0.932 6 C 0.017 3.983 7 N -0.919 5.919 8 Si 0.981 3.019 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.264 1.264 12 O -0.361 6.361 13 C 0.445 3.555 14 O -0.557 6.557 15 C -0.071 4.071 16 H 0.124 0.876 17 C -0.110 4.110 18 C -0.111 4.111 19 C -0.108 4.108 20 C -0.060 4.060 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.087 4.087 24 H 0.025 0.975 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.271 0.729 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.264 -6.708 17.803 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.160 3.840 3 H 0.025 0.975 4 C -0.587 4.587 5 H 0.086 0.914 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.804 3.196 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.188 1.188 12 O -0.277 6.277 13 C 0.290 3.710 14 O -0.449 6.449 15 C -0.090 4.090 16 H 0.141 0.859 17 C -0.147 4.147 18 C -0.148 4.148 19 C -0.146 4.146 20 C -0.060 4.060 21 C -0.196 4.196 22 C -0.204 4.204 23 C -0.125 4.125 24 H 0.045 0.955 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.128 -6.223 17.618 19.376 hybrid contribution -0.233 0.493 -1.327 1.435 sum 4.896 -5.729 16.291 17.949 Atomic orbital electron populations 1.21898 0.96835 1.00316 1.00276 1.20339 0.91862 0.92330 0.79508 0.97524 1.21253 1.38141 1.09236 0.90024 0.91352 1.25871 0.94394 0.95681 1.02306 1.70115 1.44613 1.15384 1.25572 0.85223 0.79253 0.78194 0.76926 1.18960 1.20426 1.18787 1.86475 1.76022 1.43722 1.21480 1.24759 0.73494 0.85805 0.86920 1.90562 1.50329 1.18754 1.85275 1.21250 1.00242 0.99681 0.87840 0.85876 1.21526 0.93182 0.99913 1.00109 1.21568 1.02225 0.98174 0.92824 1.21650 0.95654 0.97945 0.99329 1.20549 0.96222 0.96054 0.93155 1.21837 1.01693 0.97958 0.98114 1.22010 0.98321 0.98183 1.01900 1.21482 1.01415 0.95978 0.93644 0.95547 0.91775 0.92624 0.92016 0.91293 0.92950 0.89995 0.90147 0.89521 0.92483 0.92910 0.90730 0.93112 0.92019 0.90729 0.92978 0.92984 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.06 9.43 71.98 0.68 -6.38 16 2 C 0.21 12.08 2.42 29.85 0.07 12.16 16 3 H 0.01 0.45 7.10 -2.39 -0.02 0.43 16 4 C -0.55 -31.82 8.82 25.60 0.23 -31.59 16 5 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 6 C 0.02 0.98 5.17 84.66 0.44 1.42 16 7 N -0.92 -54.45 12.16 21.45 0.26 -54.19 16 8 Si 0.98 43.33 29.55 68.60 2.03 45.36 16 9 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 12 O -0.36 -17.95 9.77 -51.41 -0.50 -18.45 16 13 C 0.44 19.63 7.23 71.24 0.51 20.15 16 14 O -0.56 -28.39 15.20 21.95 0.33 -28.06 16 15 C -0.07 -2.18 2.35 -11.54 -0.03 -2.21 16 16 H 0.12 3.26 6.43 -2.38 -0.02 3.24 16 17 C -0.11 -2.94 5.13 30.60 0.16 -2.78 16 18 C -0.11 -2.01 5.65 30.60 0.17 -1.83 16 19 C -0.11 -1.81 4.73 30.60 0.14 -1.67 16 20 C -0.06 -1.12 0.77 -52.16 -0.04 -1.16 16 21 C -0.14 -2.30 8.47 71.98 0.61 -1.69 16 22 C -0.15 -2.37 7.78 71.98 0.56 -1.81 16 23 C -0.09 -2.39 3.30 30.61 0.10 -2.29 16 24 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 3.54 6.83 -2.39 -0.02 3.52 16 26 H 0.05 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 28 H 0.07 1.99 8.11 -2.39 -0.02 1.97 16 29 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.08 1.29 6.43 -2.39 -0.02 1.27 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 1.01 4.81 -2.38 -0.01 1.00 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 41 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 Total: -1.00 -68.10 320.87 6.71 -61.39 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.98 Total: 13.63 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 3.61 Total: -19.68 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.26 Total: -54.19 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -0.17 Total: -46.51 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -68.10 6.71 -61.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756564651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.001 kcal (2) G-P(sol) polarization free energy of solvation -68.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds